Sustainable Aquaculture Practices Research Articles

Management of Broodstock for Pacific White Shrimp (Litopenaeus vannamei) at the Center for Superior Shrimp and Shellfish Broodstock Production (BPIU2K) Karangasem, Bali

Shrimp (Litopenaeus vannamei), as it directly impacts the quality and quantity of larvae produced for aquaculture. This study investigates the management practices at the Center for Superior Shrimp and Shellfish Broodstock Production (BPIU2K) in Karangasem, Bali, focusing on the broodstock selection, breeding, and maintenance processes. The research evaluates the performance of broodstock in terms of growth, reproductive health, and overall productivity, aiming to optimize practices for sustainable shrimp farming. Data was collected through direct observation, water quality analysis, and broodstock health assessments. The findings highlight the importance of proper environmental conditions, nutritional management, and genetic selection in enhancing the reproductive success of L. vannamei. The study also discusses challenges faced by the facility, including disease management and genetic diversity, offering recommendations for improving broodstock management to ensure consistent, high-quality shrimp production. The number of male broodstock in the maintenance tank was around 250, and female broodstock was around 200, with a survival rate of 70%. This research contributes to advancing sustainable aquaculture practices and improving the shrimp farming industry in Indonesia.

Application of Photocatalytic Ozonation for the Remediation of Aquaculture Effluents: A Review

The growing global population and limitations in fish catch production have led to a surge in the demand for aquaculture. Contaminants of emerging concern (CEC) are frequently being detected at low levels in surface water. These CECs, which include previously unidentified or unregulated pollutants, pose potential risks to health and the environment, though their impacts are not yet fully understood. Extensive research studies have been proposed and undertaken to address the issue of aquaculture wastewater, aiming to minimize its impact and implement effective treatment methods. This review provides an analysis of various technologies used for treating aquaculture wastewater using advanced oxidation processes (AOPs) focusing on photocatalysis and ozonation. It examines their advantages and disadvantages, as well as their respective treatment efficacies, and discusses their potential applications in sustainable aquaculture practices complying with the Sustainable Development Goals of 1, 2, and 6 as well as being in line with the Environmental Social and Governance (ESG) framework.

Advancing Seaweed Cultivation: Integrating Physics Constraint in Machine Learning for Enhanced Biomass Forecasting in IMTA Systems

Monitoring seaweed growth rates and biomass is crucial for optimizing harvest strategies in aquaculture systems. While such a task can be managed manually on a small farm with a few seaweed tanks, it is not feasible on a commercial farm with 1000s of tanks. To this end, an Internet of Things (IoT) based seaweed growth monitoring system is being developed at Harbor Branch Oceanographic Institute (HBOI) at Florida Atlantic University (FAU). Using the Integrated Multi-Trophic Aquaculture (IMTA) system at HBOI as the test site, the project aims to develop a solution that allows farm managers to monitor seaweed growth remotely using automated sensors. An important component of this IoT solution is the machine learning-based prediction model. This study introduces an advanced Long Short-Term Memory (LSTM)-based approach for forecasting seaweed growth and biomass. In particular, an algae growth mathematical model driven by readily available environmental and aquaculture conditions has been integrated as a physical constraint in the LSTM model. This design addresses a principal challenge in this study—the lack of continuous ground truth measurements, as the biomass is recorded only at discrete intervals (e.g., initial, weekly partial harvests, and final harvest). The LSTM models are trained and evaluated for their predictive performance using experimental and synthetic data. Compared with the LSTM models with MSE loss function alone, the results showed that the model with a loss function under physics constraint achieved a significantly lower error in predicting seaweed growth. The rationale behind choosing LSTM over other state-of-the-art models is presented in the paper. This study highlights the potential of integrating machine learning with physical models to optimize seaweed cultivation and support sustainable aquaculture practices. The proposed methodology can seamlessly extend to the remote sensing data in other aquaculture settings.

EFFECT OF FREQUENCY OF FEEDING HI-PRO-VITE 781N-1 ON THE GROWTH OF GOLDEN FISH (Cyprinus carpio) IN THE GOLDEN FISH BREEDING CENTER OF TOMONAMO IN LETEFOHO VILLAGE SUB DISTRICT SAME, MUNCIPLAITY OF MAUNUFAHI, TIMOR-LESTE

The purpose of this study was to determine the effect of the frequency of artificial feeding Hi-Pro-Vite 781N-1 on the effective growth of goldfish (Cyprinus carpio) in Timor Leste, Timor. The study used a complete randomized design (CRD) with 3 treatments and 3 replications, in which the conditions of the test unit are carried out according to randomization for all test units. The results of the research conducted for eight weeks (56 days) regarding the frequency for artificial feeding hi-pro-vite 780N-1 were: water temperature, water oxygen, sin water, and total dissolved solids (TDS) of 42.4 ppm, and the results of water quality measurements once a week in the morning (08.00 WIB), on average (20.00 htl) and in the afternoon (05.00) for 8 weeks (58 days). The results obtained during the research week (65 days) fresh at water temperature with a value of 20.2 oC with water oxygen 2.89 pmm, water content 8.3 pmm and TDS 42.4 pmm are indeed a good tolerance for the growth of carp fry (Cyprinus caprio). The behavioral impact of feeding frequency on carp growth and health is explored to refine feeding practices that promote well-being alongside growth. The findings could benefit feed manufacturers and aquaculture stakeholders by informing product development and feeding strategies tailored to maximize growth in carp, contributing to sustainable aquaculture practices. This study offers practical guidance for optimizing feeding practices to enhance growth efficiency, which is crucial for improving fish yield and farm productivity.

Carbon footprint assessment and reduction strategies for aquaculture: A review

AbstractAquaculture generates less greenhouse gas emissions compared to other agriculture practices due to its limited land‐use changes, improved feed conversion rates, and reduced methane emissions from animals' digestive systems. The aquaculture carbon emissions come from various production stages, including feed production, farm operations, processing, transportation, and so forth. This review illustrates the theories, calculation methods, and practical applications of the carbon footprint in fisheries and aquaculture, as well as the challenges and strategies for emission reduction. The factors influencing the carbon footprint of fishing and manufacturing aquaculture are also discussed. Further research should focus on refining carbon footprint assessment techniques, promoting green technologies and sustainable aquaculture practices. Managing aquaculture's carbon footprint though is crucial for mitigating environmental impacts and supporting sustainable development.

Impacts of jet inflow on hydrodynamic performance and waste removal efficiency in recirculating aquaculture system aquaculture tanks based on prototype experiments

Although scaled physical models and numerical simulations have been employed to study the hydrodynamic performance of recirculating aquaculture system (RAS) aquaculture tanks, there remains a paucity of prototype experiments that fully reflect the actual hydrodynamic performance. In this study, a prototype experiment was conducted on RAS aquaculture tanks, utilizing advanced image processing techniques specifically adapted to the prototype scale. This study focused on impacts of various jet inflow parameters, including jet inflow angle (0°, 10°, 20°, 30°, 40°, 45°, 50°, 60°, and 70°), jet inflow rate (150, 180, 210, and 240 l·min−1), jet inflow area (942 and 1884 mm2), and jet inflow location (curved wall and straight wall), on the hydrodynamic performance and waste removal efficiency of RAS aquaculture tanks. The results demonstrated the hydrodynamic performance—specifically average flow velocity, flow field uniformity, and the extent of low-velocity zones conjointly determining waste removal efficiency. The curved wall proved to be the optimal location for inflow pipe placement, while a 45° jet angle yielded the best balance between hydrodynamic performance optimization and waste removal efficiency. Furthermore, reducing the inlet area significantly improved average flow velocity and flow uniformity, whereas variations in inlet flow rate had minimal impact on these factors. Supported by these compelling findings, this study offers theoretical insight and practical guidance for achieving efficient aquaculture in RAS, thereby contributing to the advancement of sustainable aquaculture practices.

Predicting Tilapia Productivity in Geothermal Ponds: A Genetic Algorithm Approach for Sustainable Aquaculture Practices

This study presents a case focused on sustainable farming practices, specifically the cultivation of tilapia (Mozambican and aureus species) in ponds with geothermal water. This research aims to optimize the hydrochemical regime of experimental ponds to enhance the growth metrics and external characteristics of tilapia breeders. The dataset encompasses the hydrochemical parameters and the fish feeding base from experimental geothermal ponds where tilapia were cultivated. Genetic algorithms (GA) were employed for hyperparameter optimization (HPO) of deep neural networks (DNN) to enhance the prediction of fish productivity in each pond under varying conditions, achieving an R2 score of 0.94. This GA-driven HPO process is a robust method for optimizing aquaculture practices by accurately predicting how different pond conditions and feed bases influence the productivity of tilapia. By accurately determining these factors, the model promotes sustainable practices, improving breeding outcomes and maximizing productivity in tilapia aquaculture. This approach can also be applied to other aquaculture systems, enhancing efficiency and sustainability across various species.

Crassocephalum crepidioides as a sustainable protein supplement in Chocolatemahseer (Neolissochilus hexagonolepis) diets: Implications for growth,health, and economic viability in sustainable aquaculture

This study investigated the potential of Crassocephalum crepidioides, an abundant weed as a protein supplement in chocolate mahseer (Neolissochilus hexagonolepis) diets. The plant replaced a combination of fish meal and mustard oil cake at 0%, 25%, 50%, 75%, and 100% in experimental diets. A 12-week feeding trial was conducted to assess growth performance, survival, biomass yield, digestive enzyme activity, blood parameters, and economic viability. Results indicated that C. crepidioides can effectively replace up to 61.3% of the combined fish meal and mustard oil cake protein without negatively impacting fish health or growth, while reducing feed costs. Fish fed diets with 25% replacement showed improved weight gain (15.5±0.7 g) and biomass yield (6.05±0.25 kg/m³) compared to the control (14.6±0.8 g and 5.75±0.28 kg/m³, respectively). Survival rates were high across all treatments (94.0- 97.3%). Digestive enzyme activities and blood parameters remained within normal ranges for inclusion levels up to 75%. Economic analysis revealed potential cost savings of up to 15.5% when incorporating C. crepidioides into mahseer diets. This finding presents an opportunity to develop low-cost fish feed for resource-poor farmers in Meghalaya, effectively converting a local weed into a valuable aquaculture input, with broader implications for sustainable aquaculture practices globally.

Enhancing the Growth Performance of Whiteleg Shrimp, <i>Litopenaeus vannamei</i>, by Salt-Tolerant <i>Bacillus</i> sp.

Probiotics are vital in aquaculture for maintaining water quality, boosting aquatic species' health, and enhancing growth rates. This study investigated the effects of probiotics, namely salt-tolerant Bacillus velezensis MT50 and Bacillus amyloliquefaciens MT51, on the water quality and performance of whiteleg shrimp (Litopenaeus vannamei PL) cultured in tanks. The experimental design included two bacterial treatments and one control treatment (without Bacillus), with each treatment replicated three times. The results indicated that temperature, pH, and total alkalinity varied within the ranges of 27.8 to 28.9°C, 7.81 to 7.94, and 98.5 to 114.7 mg CaCO3 L-1, respectively, and all were maintained at appropriate levels. Additionally, other parameters such as dissolved oxygen (DO), chemical oxygen demand (COD), total suspended solids (TSS), and total ammonia nitrogen (TAN) exhibited less fluctuation in the treatments supplemented with Bacillus sp. compared to the control. Furthermore, the densities of pathogenic agents (e.g., Vibrio) in tanks with the addition of MT50 and MT51 bacteria (102 and 101 CFU mL-1, respectively) were significantly lower than in the control tanks (104 CFU mL-1). The survival rates of shrimp treated with MT50 (70.0 ± 5.3%) and MT51 (86.7 ± 3.1%) were significantly higher (P <0.05) compared to the control group (65.3 ± 3.1%). These findings suggest the potential application of B. velezensis MT50 and B. amyloliquefaciens MT51 as probiotics for sustainable aquaculture practices.

Impact of Water Quality and Phytoplankton on Juvenile Vannamei Shrimp Growth in Low-Salinity Ponds

The Vannamei shrimp (Litopenaeus vannamei) is a key species in global aquaculture, with its growth influenced by various environmental factors and nutritional quality. This study aimed to analyze water quality parameters and phytoplankton density, as well as assess the growth of juvenile Vannamei shrimp in circular ponds with low salinity (5-6 ppt). Shrimp were stocked at a density of 80 individuals per square meter in 5-ton capacity tanks and fed four times daily over a 30-day period. Water quality parameters, including temperature, dissolved oxygen, pH, and light intensity, were monitored bi-daily, revealing fluctuations that impacted shrimp health. Notably, plankton density assessments showed Cyclotella present on day 14 but absent on day 28, while Microcystis and Rhizosolenia were detected on day 28, indicating shifts in the phytoplankton community. The specific growth rate (SGR) of shrimp was measured at 18.69% per day, with initial and final weights recorded at 0.01 ± 0.00 g and 2.72 ± 0.23 g, respectively. This study highlights the importance of maintaining optimal water quality and understanding phytoplankton dynamics for enhancing shrimp growth. Additionally, it explores the potential benefits of alginate supplementation and the effects of low salinity on the growth of juvenile Vannamei shrimp, contributing valuable insights for sustainable aquaculture practices.

Palmatine as a potent immunomodulator: Enhancing resistance to Micropterus salmoides rhabdovirus in largemouth bass through innate immune activation and viral suppression

Micropterus salmoides rhabdovirus (MSRV) poses a significant threat to aquaculture, causing substantial economic losses. In this study, we evaluated the antiviral efficacy and immunomodulatory potential of palmatine, a plant-derived monomer, against MSRV infection in largemouth bass. Our results demonstrated that palmatine significantly inhibited MSRV replication, with a reduction in viral nucleoprotein expression by 85 % at a safe concentration. Additionally, palmatine pre-treatment of EPC cells enhanced their antiviral capacity, with a maximum inhibition rate of 82 % following 24 h pre-incubation. Palmatine also effectively reduced MSRV-induced cytopathic effects, protecting cellular integrity and maintaining mitochondrial membrane potential. In vivo studies revealed that palmatine immersion at 80 mg/L was non-toxic and significantly suppressed MSRV replication in largemouth bass, increasing survival rates by 53 % over 15 d. Furthermore, palmatine pre-treatment enhanced the fish's resistance to MSRV, with a 78 % inhibition rate of viral replication and a 46 % increase in survival rate. Mechanistically, palmatine activated key immune genes, including IRF3, IRF7, and IFN, indicating its role in boosting innate immune responses. The compound also reduced horizontal transmission of MSRV in a cohabitation model, decreasing viral spread by up to 78 % over nine days. These findings highlight palmatine's potential as a small-molecule immunomodulator in aquaculture, offering a sustainable approach to disease management and enhancing fish health and welfare. Integrating palmatine into fish diets as an immunostimulant could provide a continuous, proactive defense against viral outbreaks, promoting more resilient and sustainable aquaculture practices.

Impact of Chaetomorpha aerea-enriched diet on growth, feed utilization, and haemato-immunological responses in Clarias batrachus challenged with Aeromonas hydrophila

The bacteria Aeromonas hydrophila, which causes motile Aeromonas septicemia (MAS), is dangerous to aquaculture because it affects the fish's well-being and production. As the aquaculture industry seeks sustainable and effective methods to enhance fish immunity and growth, natural supplements such as marine algae have gained attention. This study explored the potential benefits of incorporating the green marine algae Chaetomorpha aerea into the fish diet, focusing on disease resistance, growth, feed utilization, and hematological and immunological responses. Five diets were prepared, varying concentrations of C. aerea (0 control, T1: 1 g/kg; T2: 2 g/kg: T3: 5 g/kg: and T4: 10 g/kg) and administered to fish over 30 days. Following the feeding trial, the fish were exposed to A. hydrophila, and their survival rates were observed for the next 14 days. The findings demonstrated that the final weight, weight gain, relative growth rate, specific growth rate, and daily growth rate were all positively impacted by a diet containing 5 g/kg of C. aerea. Additionally, fish in the 5 g/kg C. aerea group demonstrated improved feed conversion efficiency compared to the control group. While there were no significant changes in red and white blood cell counts on the initial day, serum lysozyme activity and overall resistance to infection were enhanced in fish receiving C. aerea at 2 and 5 g/kg. These results imply that C. aerea supplementation with fish supplements may be a useful immunostimulant, boosting improved health and growth in sustainable aquaculture practices.

Application of Biofloc-Down flow hanging sponge system to remove nitrogen components in recirculating zero water exchange aquaculture system

This study presents a novel approach to sustainable aquaculture by integrating biofloc technology (BFT) with a compact down-flow hanging sponge (DHS) reactor. The integrated BFT-DHS system effectively removed nitrogen compounds while maintaining ammonia–nitrogen (NH4+-N) concentrations below 1 mg-N L-1 without water exchange. Application of this system in a tank bred with juvenile Oreochromis niloticus showed a high NH4+-N removal rate of up to 97 % and nitrite (NO2– −N) concentrations were maintained at 0.1 ± 0.1 mg-N L-1. Microbial analysis revealed Gordonia as the predominant genus in the biofloc contributing to heterotrophic nitrification, while the Peptostreptococcaceae family dominated the DHS reactor. Heterotrophic nitrification seemed to be the primary process for enhanced nitrogen removal. Pathogenic bacteria, Vibrio sp. was absent throughout the study. This study highlights the potential integration of BFT and DHS system for sustainable aquaculture practice with effective nitrogen removal.

Strategies and Techniques for Enhancing Fish Health and Averting Disease Outbreaks in Aquaculture Settings through the Use of Vaccination: A Review

The fastest–growing animal food-producing agricultural sector in the world is aquaculture, which accounts for almost half of the world’s food fish production.However, the expansion of high-density fish populations also brings forth a challenge–the rapid transmission and spread of infectious agents including several viral, bacterial, and parasitic diseases. Expansion and successful development of sustainable aquaculture practice and increasing production largely depends upon the prevention and control of outbreaks of several emerging and re-emerging infectious diseases which can result in economic loss, food safety hazards, and environmental hazards. Vaccination strategies have become highly effective and economical in protecting the health of fish and other aquaculture organisms from various infectious diseases such as edwardsiellosis, motile aeromonas septicemia (MAS), Tilapia Lake Virus (TiLV) disease, infectious salmon anemia (ISA), vibriosis, and white spot disease etc. An ideal vaccine is expected to be safe, effective, economical, and easily administered. Most of the available fish vaccines are empirically designed vaccines based on inactivated or live attenuated bacterin vaccines. Novel advances in the fields of immunology, biotechnology, and molecular biology have led to the development in designing novel and effective fish vaccines and the improvement of the existing vaccines to provide sufficient immune protection against diseases. This review investigates the currently available fish vaccines for use in finfish aquaculture against different infectious diseases different mode of vaccine administration with addressing pros and cons in detail. The information was collected from different secondary sources, and then compiled systematically.

Interplay of natural and anthropogenic factors in sediment dynamics and trace element distribution in Güllük Gulf, western Türkiye: A comprehensive geochemical and hydrodynamic analysis

Güllük Gulf, located in the southeastern Aegean Sea, is significantly impacted by diverse human activities, including urban development, tourism, and intensive aquaculture. This study aims to assess the spatial distribution of trace metals in the Gulf's sediments, identify their sources, and evaluate their environmental impacts to inform effective management strategies. It also examines sediment transport patterns, which are crucial in influencing the distribution and concentration of pollutants. Establishing background concentration levels for various elements provides a baseline to assess pollution levels and identify deviations due to anthropogenic impact. Sediment samples were collected from 45 stations and analyzed for grain size, organic carbon, carbonate content, and concentrations of 26 elements. Contamination was assessed using indices such as Enrichment Factor (EF), Geoaccumulation Index (Igeo), Contamination Factor (Cf), Degree of Contamination (Cdeg), Pollution Load Index (PLI), Modified Pollution Index (MPI), and Toxic Risk Index (TRI). Statistical analyses, including Principal Component Analysis (PCA) and Cluster Analysis (CA), were used to identify pollution sources. Results indicated that Güllük Gulf's sediments are predominantly sandy, with significant silt and clay fractions in sheltered bays. Organic carbon content averaged 1.68%, with higher values near urban and aquaculture areas. Trace metal concentrations exhibited notable spatial variability, with elevated levels of Pb, Cu and Zn in specific areas, indicating both natural and anthropogenic sources. PCA identified five significant factors contributing to metal presence, linking them to lithogenic origins, aquaculture activities, and industrial inputs. TRI results showed moderate toxic risk in Asin Bay, primarily due to Ni, As and Cr. The sediment transport model of Güllük Gulf, crucial in understanding regional pollution dynamics, revealed a complex interplay of hydrodynamic forces. The study underscores the significant environmental impact of human activities on sediment quality in Güllük Gulf. Elevated trace metal levels near aquaculture sites emphasize the need for stringent environmental management practices. Effective strategies should include regular monitoring, sustainable aquaculture practices, and stakeholder engagement to mitigate environmental impacts and preserve the Gulf's ecological integrity. This comprehensive approach provides crucial insights for future research and environmental management policies aimed at addressing the complex challenges facing Güllük Gulf.

Pilot-scale investigation of an advanced biofloc technology for treating Pacific white shrimp effluent: Performance and insight mechanisms

Biofloc technology (BFT) is extensively used in the treatment of water quality in intensive shrimp aquaculture systems. However, the rapid accumulation of biofloc in middle-to-late culture stages poses challenges for system management, impacting the economic yield of aquaculture operations. To address this issue, an advanced biofloc system (A-BS) that integrates a moving bed biofilm reactor (MBBR) with BFT was constructed, and the biofloc system (BS) was used as a control group. During a 100-day pilot-scale operation, the A-BS group effectively regulated water quality and enhanced the growth rate of Pacific white shrimp (Litopenaeus vannamei). In the A-BS group, the average concentrations of ammonia, nitrite, chemical oxygen demand, and mixed liquor suspended solids were substantially reduced compared to those in the BS group, measuring 0.19, 0.55, 36.36, and 229 mg/L, respectively, across the middle-to-late culture stages. Notably, the final stocking density and survival rate of shrimp in the A-BS group, reached 7.04 kg/m3 and 81.22 %, surpassing those in the BFT group. Furthermore, microbial community and functional gene analyses revealed more in-depth insights into the related mechanisms. Bacterial abundance and diversity, as well as the presence of denitrification genes such as Unclassified_f_Rhodobacteraceae and Paracoccus, were markedly higher in the A-BS group than in the BS group. The integration of MBBR into A-BS significantly increased the abundance of amoA and nirK genes, which are crucial for water quality stability during later culture stages. This proof-of-concept investigation confirms that the MBBR–BFT coupling process in A-BS holds promise for advancing sustainable aquaculture practice and provides strategic guidance for the modernization of the industry.

Modulatory effects of Enteromorpha prolifera powder and its enzymatic hydrolysate on growth performance, antioxidant capacity, and non-specific immunity of Trachinotus ovatus

The excessive proliferation of the genus Enteromorpha serves as the primary catalyst for the occurrence of red tides. Nonetheless, this genus is abundant in sulfated polysaccharides, phenolic compounds, peptides, and alkaloids, which exhibit remarkable efficacy in antioxidation, anti-inflammation, and immune response modulation. Consequently, Enteromorpha-derived products hold promising application prospects as aquatic feed additives. The primary objective of this study was to evaluate the impact of E. prolifera powder (EPM) and its enzymatic hydrolysate (EPH) on the growth, antioxidant capacity, intestinal morphology, and immunity of juvenile Trachinotus ovatus. Four isonitrogenous and isolipidic diets were formulated with varying levels of Enteromorpha products: 0 % (Control), 0.1 % EPH (EPH0.1), 0.3 % EPH (EPH0.3), and 3 % EPM, and were administered to juvenile T. ovatus for eight weeks. The findings revealed that growth performance in the EPH0.3 and EPM groups surpassed that of the control group, concomitant with increased feed intake and elongated intestinal villi. Notably, Enteromorpha-derived products supplementation significantly bolstered the antioxidant capacity of T. ovatus through activation of the Nrf2-Keap1 signaling pathway, leading to elevations in antioxidant enzymes such as SOD and CAT, as well as T-AOC. Conversely, MDA levels were conspicuously reduced in the Enteromorpha-treated groups. Moreover, Enteromorpha-derived products supplementation exhibited pronounced anti-inflammatory effects, marked by the downregulation of proinflammatory cytokine expression and upregulation of anti-inflammatory cytokines, along with decreased apoptotic gene expression. These observations highlight the potential anti-inflammatory properties of EPM and EPH, which may contribute to the preservation of hepatic tissue health and homeostasis. In summary, the optimal growth performance and antioxidant capacity were achieved with 0.3 % EPH supplementation, indicating the efficacy of this concentration in promoting the overall wellbeing of T. ovatus. Remarkably, the employment of processing methodologies, notably enzymatic hydrolysis, has not only facilitated the manifestation but also potentially augmented the inherent beneficial attributes traditionally ascribed to EPM. Furthermore, this refinement process has enabled a reduction in the inclusion rate of EPM within feed formulations, thereby enhancing cost-effectiveness. Consequently, Enteromorpha-derived products emerge as highly promising candidates for aquatic feed additives, with the potential to mitigate the economic burdens imposed by red tide management strategies. Their utilization represents a strategic approach towards sustainable aquaculture practices.

Developing a Microsatellite Polymerase Chain Reaction System for Small Yellow Croaker (Larimichthys polyactis) and Its Application in Parentage Assignment.

(1) Background: The small yellow croaker, an economically important fish in East Asia, has been subjected to population declines due to overfishing and environmental pressures. The development of effective breeding programs is considered crucial for the species, and accurate parentage assignment is deemed essential for such programs. (2) Methods: The assembled reference genome of the small yellow croaker was utilized to select highly polymorphic microsatellite markers. A multiplex PCR system was optimized for the simultaneous amplification of these markers. The system's accuracy was validated using controlled mating pairs and subsequently applied to a group mating scenario. (3) Results: The developed multiplex PCR system demonstrated high accuracy in assigning offspring to their parents in both the controlled and group mating scenarios. (4) Conclusions: The system is presented as a valuable tool for pedigree management, selective breeding, and conservation efforts for the small yellow croaker, facilitating sustainable aquaculture practices and genetic improvement.

Development of a haplotype reference panel and analysis of genetic structure in Golden Pompano (Trachinotus ovatus)

Trachinotus ovatus, a valuable marine fish, is primarily farmed in the South China Sea. Intensive aquaculture can lead to genetic uniformity and disease risks. Additionally, the high cost of genome sequencing restricts knowledge of genetic variation, hindering genetic analysis and breeding advancements. This study investigated the genetic diversity and structure of Trachinotus ovatus populations within the South China Sea aquaculture context, with the goal of strengthening sustainability. Additionally, the study also enhanced breeding strategies by developing a high-quality haplotype reference panel and an efficient imputation process. Through high-throughput sequencing (depth＞20X), 173 samples from three key breeding sites (SanYa, Hainan; Zhanjiang, Guangdong; and Beihai, Guangxi) were analyzed, revealing substantial genetic diversity and distinct population structures. Notably, the Beihai (BH) population exhibited significant stratification, suggesting regional genetic uniqueness. Low levels of genomic inbreeding coefficient and the identification of unique SNP loci across populations underscored the genetic richness within these Trachinotus ovatus communities. A major constructed of this work is the creation of the first high-quality haplotype reference panel for the species, demonstrating genotype imputation's viability as a cost-effective alternative for large-scale genetic studies in aquaculture. In particular, a Shapeit reference panel with 5476,550 SNPs was created, excelling in accuracy across various depths, notably achieving up to 95.8 % imputation accuracy at 1X sequencing depth. This high accuracy across populations shows the importance of genetic diversity in the panel. This research not only advances the understanding of Trachinotus ovatus genetic foundations but also provides crucial insights for conservation efforts and genetic analysis. By establishing a robust haplotype reference panel for Trachinotus ovatus helps lower the costs of future genetic research and variation studies, this study lays the foundation for sustainable aquaculture practices and breeding programs.

Aquaculture and climate change: a data-driven analysis

Abstract As climate change increasingly impacts the aquaculture industry, it poses challenges to production quality, management, and sustainability. This study provides a scientometric analysis of 47 years of research on aquaculture and climate change, analysing 4,785 articles and 224,895 references through CiteSpace software. The study highlights enduring themes such as “ocean acidification” and “global warming,” alongside emerging concerns like “deforestation” and “nutrient runoff,” reflecting new research directions. Notably, “seasonal variations” persist as a key focus due to their significant impact on aquaculture practices. Fourteen research clusters were identified, revealing a diverse array of topics from environmental performance to the effects of blue food systems and ocean acidification on marine life. Clusters related to “carbon sequestration,” “seaweed farming,” and “integrated multi-trophic aquaculture (IMTA)” emphasise the shift toward innovative practices aimed at mitigating climate impacts and enhancing sustainability. The analysis shows a need for more collaborative research, particularly from leading contributors such as the USA, Europe and Australia with underrepresented regions like Southeast Asia and Africa, to develop resilient aquaculture systems capable of adapting to climatic challenges. It advocates for the integration of new technologies and the exploration of sustainable aquaculture practices that minimise environmental impacts while enhancing global food security. This approach sets a direction for future research to promote adaptive strategies and technological innovations in aquaculture.