Surface Sampling Methods Research Articles

A long section of serpentinized depleted mantle peridotite.

The upper mantle is critical for our understanding of terrestrial magmatism, crust formation, and element cycling between Earth's solid interior, hydrosphere, atmosphere, and biosphere. Mantle composition and evolution have been primarily inferred by surface sampling and indirect methods. We recovered a long (1268-meter) section of serpentinized abyssal mantle peridotite interleaved with thin gabbroic intrusions. We find depleted compositions with notable variations in mantle mineralogy controlled by melt flow. Dunite zones have predominantly intermediate dips, in contrast to the originally steep mantle fabrics, indicative of oblique melt transport. Extensive hydrothermal fluid-rock interaction is recorded across the full depth of the core and is overprinted by oxidation in the upper 200 meters. Alteration patterns are consistent with vent fluid composition in the nearby Lost City hydrothermal field.

Addition of a Novel Qualitative Technique to Standard Quantitative Practices for Evaluation of Hazardous Drug Exposure in a Canadian Hospital Setting.

Current recommendations from regulatory authorities suggest quantitative surface sampling for detection of hazardous drugs at least once every 6 months. A more frequent and efficient process for hazardous drug testing might reduce the safety risks associated with exposure to these agents. The primary objective was to assess the findings of surface testing based on traditional quantitative sampling methods relative to the findings of qualitative surface sample testing with the BD HD Check system. The secondary objectives included assessment of the ease of integrating qualitative sampling into pharmacy protocols and identification of opportunities to enhance patient and staff education and safety. Samples from 23 unique surfaces were tested concurrently once a month for 5 months using a quantitative surface sampling method and the qualitative BD HD Check system on adjacent 12 inch × 12 inch (30.5 cm × 30.5 cm) surface areas. The presence or absence of cyclophosphamide, methotrexate, and/or doxorubicin contamination was assessed by each of the 2 testing methods. The BD HD Check system was also assessed for ease of use and efficiency. Ten areas of contamination were identified over the 5-month period. Nine were detected by the BD HD Check system and one by the quantitative system. The BD HD Check system was easy to use, with results available in less than 10 minutes per area tested. The BD HD Check system allows for more timely identification of surface contamination with hazardous drugs than the standard sampling protocol. The discrepancy in results between the 2 methods of hazardous drug surface sampling requires further investigation.

Ultrasound-based surface sampling in immersion for mass spectrometry

We present a surface sampling method for the chemical analysis of liquid-immersed solid samples. Liquid immersion allows samples to be kept in a hydrated state. We employed cavitation generated by high-intensity focused ultrasound for localized material removal. The appropriate transducer–sample distance was determined using the actuating ultrasound transducer prior to sampling, allowing sonication in focus despite surface height variation. We demonstrate the proposed surface sampling method on water-submerged glass cover slides painted with permanent markers, achieving sampling with tunable spot size down to 500 μm. The removed and collected material was transferred for chemical analysis by electrospray ionization mass spectrometry, which showed mass peaks characteristic to the permanent markers.

Comparison of a standard environmental surface sampling method and a composite approach for select healthcare pathogens

Background: Hospital surfaces are known to contribute to the spread of healthcare-associated infections (HAIs). Environmental sampling is often performed to locate a reservoir or to evaluate intervention strategies in healthcare facilities. Composite sampling is commonly practiced in other fields of environmental sampling and involves collection of multiple samples combined entirely or partially to form a new sample. We compared a standard CDC surface whole-tool sampling method with a composite sampling approach. Methods:Acinetobacter baumannii (AB), Klebsiella pneumoniae that produce K. pneumoniae carbapenemase (KPC), vancomycin-resistant Enterococcus faecalis (VRE), methicillin-resistant Staphylococcus aureus (MRSA), and Clostridioides difficile spores were suspended in an artificial soil and deposited as 40 µL droplets (~104 CFU total) onto steel coupons of surface areas 323 cm2, 645 cm2, or 1,290 cm2 and dried for 2 hours. The surfaces were sampled with a single pass of a cellulose sponge— either the larger side of the sponge (face) or the smaller side of the sponge (edge)—and the optimal surface area was determined. Recovery from the optimal surface area with a single pass sampling was compared to the recovery using a standard CDC method in which all sides were used (ie, whole-tool method) to sample a standard area (645 cm2). Recovery was determined by culture and total CFU were determined for each optimal surface area. Theoretical composites were constructed using the mean total CFU of optimal surface area; 2×((face) + (edge)). Significance was set at P ≤ .05. Results: Total CFU recovery using the whole-tool method was significantly greater than the single pass sample recovery for MRSA (18,300 vs 16,600 CFU) and VRE (27,600 vs 26,400 CFU) (P < .05). When comparing the theoretical composite method to the standard whole-tool area (625 cm2), the theoretical composite total CFU was significantly greater than the whole-tool method for all organisms. For example, VRE recovery with the standard CDC whole-tool method was 27,600 CFU from 625 cm2, yet a theoretical composite approach recovered 79,800 CFU from an area of 1,290 cm2. Conclusions: Many factors influence recovery when sampling the environment, and composite sampling is a promising approach when sampling large surface areas. Using a theoretical composite of single-pass samples, the potential for improved detection with composite sampling was demonstrated. A composite sampling approach will reduce time and resources for sampling and sample processing, allowing larger surface areas to be investigated which will improve infection control strategies.Disclosures: None

Evaluation of two surface sampling methods for the detection of Bacillus atrophaeus aerosolized in a test chamber

In response to the airborne release of biothreat agents, surface sampling is often used to provide information on bioaerosol dispersal and deposition, to identify biocontaminant sources, and determine the effectiveness of decontamination. The objective of this project was to use aerosolization and deposition of dry spores to evaluate the efficiency of the cellulose sponge wipe and 37-mm cassette micro vacuum surface sampling methods for the collection of microorganisms from two contaminated surfaces, metal and concrete. Aerosolization trials were performed in a room-sized test chamber with known airborne concentrations of Bacillus atrophaeus spores serving as a surrogate for a bioterrorism agent. Following each aerosolization trial, the chamber heating, ventilation, air conditioning (HVAC) system was turned off to allow airborne spores to settle onto the test materials. Surface sampling was conducted and culture analysis was used to determine the concentration of B. atrophaeus on the surfaces. Results were compared with reference samples to determine the collection efficiency of the sampling methods. The sponge wipe sampling method was significantly more effective than the vacuum method for the collection of B. atrophaeus from both metal and concrete surfaces (P < 0.001). The collection efficiency of the sponge wipe method was 39.5% for metal and 26.5% for concrete, while the collection efficiency of the vacuum method was 7.6% for metal and 9.3% for concrete. The results of this study provided data on the collection efficiencies of two surface sampling methods for detection and enumeration of biocontaminants and can aid in selection of sampling methods.

A surface sampling and liquid chromatography mass spectrometry method for the analysis of quaternary ammonium compounds collected from public transportation buses in New Jersey

Quaternary ammonium compounds (QACs) are a class of antimicrobial disinfectants whose use in cleaning products increased during the COVID-19 pandemic. Chemically, their low vapor pressure indicates a proclivity to persist on surfaces, and their presence suggests a level of protection against microorganisms. The widespread application of QACs in response to the SARS CoV-2 virus created a need to evaluate their longevity on surfaces, for both efficacy and possible health risks. There are however, no standardized analytical methods for QAC surface sampling and analysis, and no published studies quantifying their concentrations on mass transportation vehicles-a high occupancy, close-contact microenvironment documented to facilitate the spread the SARS CoV-2 virus. Here, we describe a robust liquid chromatography mass spectrometry (LC-MS) method for the analysis of QACs and simultaneous development of a direct surface sampling and extraction protocol. We demonstrate the applicability of the method through the analysis of surface samples collected from in-service public transportation buses.The rapid, sensitive LC-MS method included 8 target QACs quantified on a Q-Exactive HF Hybrid Quadrupole-Orbitrap mass spectrometer using an electrospray ionization source and Dionex UltiMate 3000 UHPLC system for analyte separation. QAC standard mixtures at concentrations between 0.1 ng mL−1 and 2000 ng mL−1 were analyzed, and chromatographic separation of all analytes was achieved in less than 10 min. All correlation coefficients were reported at r > 0.986, and LODs ranged from 0.007 to 2.103 ng mL−1 for all compounds, confirming the method's sensitivity. A previously reported surface sampling and extraction protocol was modified to further simplify the procedure and expand the number of target compounds. The new sampling protocol was optimized from 10 commercially available wipes and 4 solvent types by quantifying recovery from the surface. Band-Aid brand small gauze pads saturated with isopropanol had the highest recovery efficiencies, ranging from 61.5 to 102.9% across all analytes. To test the real-world applicability, wipe samples were collected from 4 in-circulation New Jersey Transit buses on 5 separate days over the course of a month to assess the occurrence and longevity of QACs on sanitized mass transportation vehicles. Concentrations of QACs were detected on every wipe sample taken, and at all sampled time points, confirming their persistence on hard surfaces. QACs have the potential to form polymers, and detection of the polymer might serve as a secondary indication of their effectiveness on surfaces. None of the polymers detected however, were unique to QACs from this study. The polymers detected were already present in the wipe and used as an internal standard to demonstrate the efficacy of extraction and analysis of polymeric QACs.

Exploration advancement of the Stewardson Lake uranium project (Athabasca Basin, Canada) using an integrated geological and geochemical methodology and academic–industry collaboration

ABSTRACTKurt Kyser contributed significantly to understanding the role that fluids play in the formation of unconformity-related U deposits in Canada and Australia and also in the exploration for these deposits. Kurt's exploration research was collaborative with industry, and arguably the most productive of the many industry-collaborative relationships Kurt developed was with Uravan Minerals, a junior exploration company. Ten years of collaborative U-deposit and exploration geochemical research with Uravan, including development of innovative multi-media surface sampling and analytical methods, culminated with the Stewardson Lake uranium exploration project in the Proterozoic Athabasca Basin, Canada. Soil clay separates, pine and spruce tree cores and vegetation, and glacially transported sandstone boulders collected at Stewardson Lake record 207Pb/206Pb ratios as low as 0.18, indicative of radioactive decay of U in a Proterozoic-aged U deposit, and elevated pathfinder elements such as Ni and Co in two areas of the Stewardson Lake property named Areas A and B. Four diamond drill holes in Areas A and B tested targets consisting of anomalous surface-media geochemistry coincident with conductive host rocks determined using geophysical methods. The favorable targeting characteristics were not explained by two of the drill holes in Area A, where only narrow intervals of elevated U, radiogenic Pb, and pathfinder elements or structural disruption that can accompany Athabasca U deposits were intersected. Two drill holes in Area B intersected a broad zone of characteristic chlorite + hematite + illite alteration and U concentrations &amp;gt;1 ppm (aqua regia) in the basal host sandstone. One drill hole in Area B intersected a ∼30-meter-thick hydrothermal alteration zone consisting of silicification, chlorite + kaolinite clay alteration, smoky quartz, Ni-Fe sulfides, and disseminated uraninite accompanied by elevated gamma count rates. Fractures in the host sandstone in Area B record the highest pathfinder concentrations and the most radiogenic Pb isotope ratios and were likely a conduit for secondary dispersion of alteration-related components to the surface. The results validate the Uravan/QFIR exploration model developed over a decade of collaborative applied research and confirm that the Stewardson Lake area is highly prospective to host unconformity-related U mineralization. Lastly, clay alteration mineralogy in the Stewardson Lake area is contrasted with that in the eastern Athabasca Basin, and the value of the industry–academic relationship that benefited both Uravan Minerals and Kurt's Queen's Facility for Isotope Research laboratory is discussed.

Comparison of surface sampling methods for an extended duration outdoor biological contamination study.

Bacillus anthracis, the causative agent for anthrax, is a dangerous pathogen to humans and has a history as a bioterrorism agent. While sampling methods have been developed and evaluated for characterizing and clearing contaminated indoor sites, the performance of these sampling methods is unknown for use in outdoor environments. This paper presents surface sampling data for Bacillus atrophaeus spores, a surrogate for B. anthracis, from a 210-day outdoor study that evaluated the detection and recovery of spores using five different sampling methods as follows: sponge sticks, 37-mm vacuum filter cassettes, residential wet vacuums, robotic floor cleaners, and grab samples of soil, leaves, and grass. The spores were applied by spraying a liquid suspension onto the surfaces. Both asphalt and concrete surfaces were sampled by all the surface sampling methods, excluding grab sampling. Stainless steel coupons placed outdoors were additionally sampled using sponge sticks. Sampling methods differed in their ability to collect detectable spores over the duration of the study. The 37-mm vacuums and sponge sticks consistently detected spores on asphalt through day 37 and robots through day 99. The wet vacuums detected spores on asphalt for days 1 and 4, but not again until day 210. On concrete, all samplers detected spores until day 210 except for sponge stick samplers that detected spores only up until the day 99 time point. For all sampling methods, spore recoveries were higher from concrete than from asphalt surfaces. There was no statistically significant difference in recoveries of sponge sticks and 37-mm vacuums from either asphalt or concrete surfaces. Processing of grab samples was challenging due to non-target background microorganisms resulting in high detection limits for the samples.

An Analytical Procedure by the Inductively Coupled Plasma Mass Spectrometry (ICP-MS) for the Quantitation of Total Phosphorus Content on the Surface of the Manufacturing Equipment for Oligonucleotides

An analytical procedure by the inductively coupled plasma mass spectrometry (ICP-MS) is provided to quantitate the remaining phosphorus amount on the surface of the manufacturing equipment for the oligonucleotide active pharmaceutical ingredient (API). In this analytical procedure, the sample solutions obtained from the rinse sampling and direct surface sampling methods are directly injected into the ICP-MS equipment without the inspissation of the extraction liquid. The limit of quantitation for phosphorous was 0.02 µg/mL. Quantitation of phosphorous was achieved over a linear range of 0.02 to 0.8 µg/mL. Analytical validation was carried out to prove that this analytical procedure is appropriate and effective to monitor the cleanliness of the manufacturing equipment after the oligonucleotide API manufacturing and the following cleaning of the equipment. Calibration curve originally passed through the origin with correlation coefficient of 0.999. The precision through the rinse sampling method was within ±10%. The satisfactory accuracy for the rinse sampling method was proven from the assessment of linearity and precision. The precision and accuracy of the analytical procedure were both within ±10% for the direct surface sampling method. The described analytical procedure by ICP-MS following the two types of the sampling procedures can easily be applied to the routine analysis for the verification of the cleanliness of the manufacturing equipment for oligonucleotide API.

An Atomistic Perspective on the Effect of Strain Rate and Lithium Fraction on the Mechanical Behavior of Silicon Electrodes

Abstract The process of charging and discharging of lithium-ion batteries results in the periodic intercalation and ejection of lithium ions in the anode material. High-capacity anode materials that are of significant interest for next-generation batteries, such as silicon, undergo large deformation during this process. The ensuing electro-chemo-mechanical stresses and accompanying microstructural changes lead to a complex state of inelastic deformation and damage in the silicon electrode that causes a significant capacity loss within just a few cycles. In this study, we attempt to understand, from an atomistic viewpoint, the mechanisms underlying the plasticity behavior of Si-anode as a function of lithiation. Conventional molecular dynamics simulations are of limited use since they are restricted to loading rates in the order of 108 s−1. Practical charging-discharging rates are several orders of magnitude slower, thus precluding a realistic atomistic assessment of the highly rate-dependent mechanical behavior of lithiated silicon anodes via conventional molecular dynamics. In this work, we use a time-scaling approach that is predicated on the combination of a potential energy surface sampling method, minimum energy pathway, kinetic Monte Carlo, and transition state theory, to achieve applied strain rates as low as 1 s−1. We assess and compare the atomistic mechanisms of plastic deformation in three different lithium concentration structures: LiSi2, LiSi, and Li15Si4 for various strain-rates. We find that the strain rate plays a significant role in the alteration of the deformation and damage mechanisms including the evolution of the plastic deformation, nucleation of shear transformation zone, and void nucleation. Somewhat anomalously, LiSi appears to demonstrate (comparatively) the least strain rate sensitivity.

Choosing sampling methods for Chilopoda, Diplopoda and Isopoda (Oniscidea): A case study for ferruginous landscapes in Brazilian Amazonia

The edaphic fauna plays an important role in the organic matter dynamics of the soil. Millipeds (Diplopoda), centipeds (Chilopoda) and isopods (Isopoda) are among the main components of the soil fauna. Vegetation structure represents one of the main factors influencing composition and diversity of these species that inhabit leaf litter and soil, what is particularly important in the Amazon Forest, where there are several singular vegetation types. Savannah and forest areas stand out in ferruginous hills, which represents one of the most poorly known and highly threatened ecosystems in the Amazon. However, sampling the edaphic fauna in high diversity sites represents a challenging task. Studies have shown that sampling method may influence observed patterns of diversity. From this perspective, the present study aimed to (i) investigate whether assemblages of Chilopoda, Diplopoda and Isopoda differ between vegetation types in the Amazon, (ii) indicate how biological parameters behave in such communities, (iii) identify which method or combination of methods is better suited to sample species richness and (iv) quantify the efficiency of each method regarding time of work and cost. Sampling was conducted by means of hand collection, leaf litter collection, hay-bait traps and soil sampling in four patches, two in the savannah (also called canga) and two in the forest. Richness was higher in forest habitats for Chilopoda and Diplopoda, while for Isopoda there was no significant difference. Species composition also differed between vegetation types for Chilopoda and Isopoda, but not for Diplopoda. Beta diversity between vegetation types was mainly determined by nestedness and balancing, while turnover was the main beta diversity component responsible for differences among methods. Soil sampling and hand collection added more species to the samples, therefore, this combination was the most efficient to access diversity. Our results support the hypothesis that differences in the soil cover promoted by distinct vegetation types influence the species diversity and composition of edaphic fauna. The differences were mainly determined by nestedness and balancing, indicating that the fauna sampled in the canga represents a subset of those present in the surrounding forest. In this sense, even in ecosystems with distinct vegetation types, the combination of soil and surface sampling methods is recommended. Lastly, the present study proposes a set of decision rules and a key to select the most appropriate method to sample the studied taxonomic groups.

Prevalence of Staphylococcus aureus and antibiotic resistant Staphylococcus aureus in public transport in Bratislava, Slovakia

Abstract There is evidence that the transmission of Staphylococcus aureus and methicillin-resistant S. aureus between the community and environmental surfaces still exists. Even the means of this transmission remain uncertain, the public transport system may serve as a potential source of different bacteria, and the contact with contaminated public surfaces may increase the risk for bacterial diseases emergence. This study aimed to investigate S. aureus contamination on Bratislava’s public transport vehicles. Forty samples of hand-touched surfaces were collected during December 2015 and March 2017 by using surface sampling method. S. aureus was detected in all analysed swabs. Simultaneously, antibiotic resistance of S. aureus from swabs was evaluated. Of 40 samples, only 23 % did not contain S. aureus resistant to some of 10 analysed antibiotics. On the other hand, the severe prevalence of highly resistant S. aureus to penicillin, methicillin, ampicillin, and cefoxitin was confirmed. 15 % of isolates displayed resistance to at least three antimicrobial classes. The amount of S. aureus was not significantly influenced by the lines or by the analysed surface (grabs rails or on-board stop buttons). However, there was a statistically significant effect of year period, both between samples from December and March and between samples from the same month but different year. The study confirmed the widespread occurrence of resistant S. aureus in public transport vehicles in Bratislava, Slovakia.

Evaluation of Two Surface Sampling Methods for Microbiological and Chemical Analyses To Assess the Presence of Biofilms in Food Companies

Biofilms are an important source of contamination in food companies, yet the composition of biofilms in practice is still mostly unknown. The chemical and microbiological characterization of surface samples taken after cleaning and disinfection is very important to distinguish free-living bacteria from the attached bacteria in biofilms. In this study, sampling methods that are potentially useful for both chemical and microbiological analyses of surface samples were evaluated. In the manufacturing facilities of eight Belgian food companies, surfaces were sampled after cleaning and disinfection using two sampling methods: the scraper-flocked swab method and the sponge stick method. Microbiological and chemical analyses were performed on these samples to evaluate the suitability of the sampling methods for the quantification of extracellular polymeric substance components and microorganisms originating from biofilms in these facilities. The scraper-flocked swab method was most suitable for chemical analyses of the samples because the material in these swabs did not interfere with determination of the chemical components. For microbiological enumerations, the sponge stick method was slightly but not significantly more effective than the scraper-flocked swab method. In all but one of the facilities, at least 20% of the sampled surfaces had more than 102 CFU/100 cm2. Proteins were found in 20% of the chemically analyzed surface samples, and carbohydrates and uronic acids were found in 15 and 8% of the samples, respectively. When chemical and microbiological results were combined, 17% of the sampled surfaces were contaminated with both microorganisms and at least one of the analyzed chemical components; thus, these surfaces were characterized as carrying biofilm. Overall, microbiological contamination in the food industry is highly variable by food sector and even within a facility at various sampling points and sampling times.

Elucidating the atomistic mechanisms underpinning plasticity in Li-Si nanostructures

Amorphous lithium-silicon (a-Li-Si), especially in nanostructure form, is an attractive high-capacity anode material for next-generation Li-ion batteries. During cycles of charging and discharging, a-Li-Si undergoes substantive inelastic deformation and exhibits microcracking. The mechanical response to repeated lithiation-delithiation eventually results in the loss of electrical contact and consequent decrease of capacity, thus underscoring the importance of studying the plasticity of a-Li-Si nanostructures. In recent years, a variety of phenomenological continuum theories have been introduced that purport to model plasticity and the electro-chemo-mechanical behavior of a-Li-Si. Unfortunately, the micromechanisms and atomistic considerations underlying plasticity in Li-Si material are not yet fully understood and this impedes the development of physics-based constitutive models. Conventional molecular dynamics, although extensively used to study this material, is grossly inadequate to resolve this matter. As is well known, conventional molecular dynamics simulations can only address phenomena with characteristic time scales of (at most) a microsecond. Accordingly, in such simulations, the mechanical behavior is deduced under conditions of very high strain rates (usually, ${10}^{8}\phantom{\rule{4.pt}{0ex}}{\text{s}}^{\ensuremath{-}1}$ or even higher). This limitation severely impacts a realistic assessment of rate-dependent effects. In this work, we attempt to circumvent the time-scale bottleneck of conventional molecular dynamics and provide novel insights into the mechanisms underpinning plastic deformation of Li-Si nanostructures. We utilize an approach that allows imposition of slow strain rates and involves the employment of a new and recently developed potential energy surface sampling method---the so-called autonomous basin climbing---to identify the local minima in the potential energy surface. Combined with other techniques, such as nudged elastic band, kinetic Monte Carlo and transition state theory, we assess the behavior of a-Li-Si nanostructures under tensile strain rates ranging from ${10}^{3}$ to ${10}^{8}\phantom{\rule{4.pt}{0ex}}{\text{s}}^{\ensuremath{-}1}$. We find significant differences in the deformation behavior across the strain rates and discover that the well-known shear transformation zones (widely discussed in the context of amorphous materials) are formed by a ``diffusionlike'' process. We identify the rotation of the shear transformation zone as a key dissipation mechanism.

Air and Surface Sampling Method for Assessing Exposures to Quaternary Ammonium Compounds Using Liquid Chromatography Tandem Mass Spectrometry.

This method was designed for sampling select quaternary ammonium (quat) compounds in air or on surfaces followed by analysis using ultraperformance liquid chromatography tandem mass spectrometry. Target quats were benzethonium chloride, didecyldimethylammonium bromide, benzyldimethyldodecylammonium chloride, benzyldimethyltetradecylammonium chloride, and benzyldimethylhexadecylammonium chloride. For air sampling, polytetrafluoroethylene (PTFE) filters are recommended for 15-min to 24-hour sampling. For surface sampling, Pro-wipe® 880 (PW) media was chosen. Samples were extracted in 60:40 acetonitrile:0.1% formic acid for 1 hour on an orbital shaker. Method detection limits range from 0.3 to 2 ng/ml depending on media and analyte. Matrix effects of media are minimized through the use of multiple reaction monitoring versus selected ion recording. Upper confidence limits on accuracy meet the National Institute for Occupational Safety and Health 25% criterion for PTFE and PW media for all analytes. Using PTFE and PW analyzed with multiple reaction monitoring, the method quantifies levels among the different quats compounds with high precision (<10% relative standard deviation) and low bias (<11%). The method is sensitive enough with very low method detection limits to capture quats on air sampling filters with only a 15-min sample duration with a maximum assessed storage time of 103 days before sample extraction. This method will support future exposure assessment and quantitative epidemiologic studies to explore exposure-response relationships and establish levels of quats exposures associated with adverse health effects.

Evaluation of a Surface Sampling Method for Recovery of Human Noroviruses Prior to Detection Using Reverse Transcription Quantitative PCR

Human noroviruses are the most common cause of acute viral gastroenteritis, and the environmental persistence of these viruses contributes to their transmissibility. Environmental sampling is thus an important tool for investigating norovirus outbreaks and for assessing the effectiveness of cleaning and decontamination regimens. The purpose of this study was to evaluate a sampling material (wipes) for their efficacy at recovering human norovirus from hard surfaces and foods. Dilutions of a human norovirus GII.4 stool specimen derived from an outbreak were applied to hard surfaces (stainless steel and ceramic) and the surfaces of representative foods (green pepper, apple, tomato, and cheese). The viruses were recovered at various times postinoculation using the wipes, followed by RNA extraction and reverse transcription quantitative PCR. Recovery efficiency ranged from 74% to almost 100% for all artificially inoculated hard surfaces and for most fresh produce surfaces. Less efficient recovery was observed for cheese. Viral RNA could be recovered from select surfaces for up to 7 days postinoculation, with a <1 log reduction in genome copy number. In field tests, 24 (11%) of 210 environmental samples collected during winter 2012 from restrooms in North Carolina were presumptively positive for human norovirus, and six of these samples were confirmed as GII.4 by sequencing. These wipes may be a valuable tool for investigations of norovirus outbreaks and studies of norovirus prevalence.

Fine‐scale cryogenic sampling of planktonic microbial communities: Application to toxic cyanobacterial blooms

A lack of fine-scale methods for sampling planktonic microbial populations hinders advancement in understanding the responses of these communities to environmental conditions. Current methods provide resolution at scales of centimeters to meters, but not at the millimeter-scale required to understand highly stratified communities. To address this we developed two cryogenic sampling tools to collect spatially-precise samples from aquatic environments while simultaneously preserving the microbial communities. The application of these samplers was examined over a 5.5 h period using a cyanobacterial scum (Microcystis) formed in experimental mesocosms. A cryogenic “surface snatcher” collected a discrete layer (ca. 1 mm) of surface water. Compared to conventional surface sampling methods, the surface snatcher samples contained up to 22-times more microcystin, indicating that less underlying water was incorporated into the sample. A cryogenic “cold finger” sampler was used to collect vertical profiles of the upper 40 mm of the water column. This profiler provided new insights into the fine-scale structure of Microcystis scums, demonstrating that more microcystin-producing Microcystis was contained in the surface 5 mm than the 35 mm below. The results also showed that upregulation of microcystin production was highly localized in the top 2.5 mm of the Microcystis scum. Our results demonstrate that extreme changes in cyanobacterial communities can occur over small distances, and indicate that sampling resolution is of great importance for improving knowledge on cyanobacterial blooms and toxin production. While this study focused on microcystin-producing Microcystis, the cryogenic sampling tools described here could be applied to any planktonic microbial community.

Middle East respiratory syndrome coronavirus on inanimate surfaces: A risk for health care transmission

The Middle East Respiratory syndrome coronavirus (MERS-CoV) has been responsible for multiple health care–associated outbreaks. We investigated whether high-touch surfaces in 3 rooms of laboratory-confirmed MERS-CoV patients were contaminated with MERS-CoV RNA. We found 2 out of 51 surfaces were contaminated with MERS-CoV viral genetic material. Hence, environmental contamination may be a potential source of health care transmission and outbreaks. Meticulous environmental cleaning may be important in preventing transmission within the health care setting.

Chemical reactions in indoor sources

Indoor environmental chemistry, or indoor chemistry for short, utilizes the theory and methods of chemistry to study pollutant generation, transport, transformation, and fate indoors, and to find solutions to indoor environmental quality (IEQ) problems. In the past two decades, most attention has been given to indoor air and interfacial chemistry. Although these are key research areas of indoor environmental chemistry, the latter has a much wider scope, which also covers areas such as the presence and characteristics of chemicals and their precursors in buildings and other built environments, chemical reactions in contaminant sources, indoor combustion processes, chemistry associated with indoor air and surface cleaning, chemistry of building decontaminations, interactions of chemicals with occupants, and analytical chemistry specific to indoor environments (e.g. surface sampling methods). In this short article, we discuss the importance and research needs for one of these areas – the chemical reactions that take place in indoor sources.

Bridging time-scales: Grain boundary sliding constitutive law from atomistics

Grain boundary sliding is the key deformation and damage mechanism for high temperature deformation of crystalline materials impacting, thus, applications ranging from nuclear reactors to aircrafts. Despite decades of research—theoretical and experimental—a definitive atomistic understanding of this phenomenon has been elusive. The primary bottleneck is the fact that conventional molecular dynamics can only address pico-to-nano seconds of material physics while the characteristic relaxation times for creep phenomena (including grain boundary sliding) are several orders of magnitude slower. In this letter, we use a fresh approach based on a recently developed potential energy surface sampling method that allows us to bridge long time scales and, for the first time, develop a physically reasonable constitutive law. Our results show a dramatic improvement over what can be gleaned from conventional molecular dynamics and provide insights on the relative merits of existing theories of grain boundary sliding. Our simulations (based on a prototypical metal, Al) answer important questions such as (i) is there a threshold stress for grain boundary sliding?, (ii) what is the form of constitutive law for grain boundary sliding? and others.