Synthesis methods of single walled carbon nanotubes (SWCNTs) result in mixtures of different chiralites. Chirality affects SWCNT diameter as well electronic and optical properties. For use in optical sensors, mono-chirality SWCNTs offer better signal compared to chirality mixtures. A common chirality separation method is aqueous two-phase extraction, where solutions of surfactants are used to partition SWCNTs based on chirality. The process results in a mono-chiral solution of SWCNTs wrapped in surfactant, however for sensing applications SWCNTs need to be exchanged from this surfactant wrapping to single stranded DNA wrapping. Concerns have been raised about residual surfactant remaining on the SWCNT surface after the exchange process and the effect this would have on the sensing capabilities of the SWCNT. To investigate this, we compared the emission spectra of covalently modified SWCNTs sonicated directly in DNA to that of SWCNTs exchanged from surfactant into DNA. We observed that emission from exchanged SWCNTs was red shifted compared to direct DNA sonicated SWCNTs, however exchanged SWCNTs had similar environmental responsivity to direct DNA sonicated SWCNTs.