A new Conger eel species is described based on four specimens collected from Petuaghat fishing harbour, West Bengal, India. The combination of morphological characters and molecular data are discordant with the seven congeners currently recognized. Rhynchoconger smithi sp. nov. can be distinguished by having head smaller than trunk; pre-anal length more than three times in total length; a small eye, diameter 2.0-2.2 in snout length; rictus ending at a vertical through posterior margin of pupil; ethmovomerine teeth patch small, with 58-74 blunt teeth arranged in seven to eight irregular rows; vomerine teeth patch small, with 18-28 granular teeth arranged in four to six irregular rows, distinctly separated by narrow spaces from the ethmovomerine and maxillary teeth; three supraorbital pores and one supra-temporal pore; and 159+ to 164 total vertebrae. Moreover, R. smithi differs significantly from four congeners, R. nitens, R. flavus, R. ectenurus and R. gracilior, with Kimura two-parameter (K2P) distances 14.6%-20.3%.