A new polymorph [Cu(II)(vanillin)2(H2O)2].2(H2O) has been synthesized and characterized by single crystal X-ray structural studies. Two other crystals having same formula and coordination unit but differing supramolecular arrangement due to slightly different role played by water molecules have already been reported in the literature [B. Kozlevˇcar et al. Z. Naturforsch., B: Chem. Sci. 2005, 60, 1273][Kozlevčar et al. Acta Chim. Slov. 2005, 52, 40–43]. The current compound is another polymorph in this system which has arisen again due to a different supramolecular arrangement which is water induced. Hirshfeld surface and energy framework analysis have been employed to compare these three polymorphs by assessing the nature of intermolecular interactions. In the current compound strong OH···O hydrogen bonding interactions between coordinated water molecules and –OH group attached to vanillin ligand leads to parallel alignment of successive coordination units leading to a supramolecular ribbon topology that runs along the crystallographic a-axis. A zigzag chain of single file water chain is positioned in between successive ribbons which acts as a zipper giving rise to a 2D supramolecular arrangement of the molecular complexes. In two other reported polymorphs instead of a single file water chain a cyclic water motif has been observed. The electronic structure of the complex explored using DFT methodology. This set of three polymorphs is an interesting example of water induced polymorphism.