Silicate Supply Research Articles

Silicate Application Alleviated the Depressive Impacts of Nighttime Warming on the Rice Growth, Yield and Quality in Southern China

ABSTRACTNighttime warming decreased single rice production in southern China, while silicate supply increased the yield and stress resistance. It is still unclear regarding the impacts of silicate application on the growth, yield and quality in rice under nighttime warming. A field experiment was conducted to investigate the impacts of silicate application on the growth, yield and quality during rice growing period under nighttime warming. The warming was set at two levels, that is, ambient temperature (CK) and nighttime warming (NW). The open passive nighttime warming was used in this study, that is, rice canopy was covered with aluminium foil reflective film at night (19:00–6:00). Silicate fertiliser (steel slag) was applied at two levels, that is, Si0 (0 kg SiO2·hm−2) and Si1 (200 kg SiO2·hm−2). The results indicated that, compared with the control, the average nighttime temperature on rice canopy and at 5 cm soil layer increased by 0.51°C–0.59°C and 0.28°C–0.41°C during the rice growing period, respectively. Under nighttime warming, silicate supply increased the dry weight of shoot, total dry weight of the whole plant and yield by 64.1%, 55.3% and 7.1% at the filling‐maturity stage, respectively. Silicate application significantly reduced dry matter translocation rate with 15%–18%, but significantly increased the root‐shoot ratio with 0.39–0.41 in rice. Under nighttime warming, silicate supply significantly increased milled rice rate, head rice rate and total starch content by 2.3%, 2.5% and 41.8%, respectively. Nighttime warming reduced the yield by decreasing the number of effective panicle, seed setting rate and 1000‐grain weight, but increasing empty chaff grain. Silicate supply increased the yield by increasing the number of effective panicle, filled grains per panicle, seed setting rate and 1000‐grain weight, but reducing empty chaff grain. This study suggests that silicate supply can effectively alleviate the suppressive effects of nighttime warming on single rice growth, yield and quality in Southern China.

Remote silicate supply regulates spring phytoplankton bloom magnitude in the Gulf of Maine

AbstractSpring phytoplankton blooms in the Gulf of Maine (GoM) are sensitive to climate‐related local and remote forcing. Nutrient supply through the slope water intrusion has been viewed as critical in regulating the GoM spring blooms, with an assumption that nitrogen is the primary limiting nutrient. In recent years, this paradigm has been challenged, with silicate being recognized as another potential limiting nutrient, but the source of silicate and its associated water mass remain difficult to be determined. In this study, a time series of spring bloom magnitude was constructed using a self‐organizing map algorithm, and then correlated with the fluctuation of water composition in the deep Northeast Channel. The results reveal the importance of silicate supply from previously less‐recognized deep Scotian Shelf Water inflow. This study offers a new hypothesis for spring bloom regulation, providing a better understanding of mechanisms controlling the spring bloom magnitude in the GoM.

Southwest monsoon-driven changes in the phytoplankton community structure in the central Arabian Sea (2017–2018): After two decades of JGOFS

The Arabian Sea, a land-locked low latitude high productive oceanic province, is characterized by strong seasonality due to the reversal of monsoon winds. “Open ocean upwelling” occurs during the southwest monsoon (SWM) in the northern part of the Findlater Jet, (a low-level atmospheric jet that forms in the Arabian Sea), and consequently, the southern part experiences downwelling. Moreover, the hydrography of this region can be further modulated by coupled ocean-atmospheric events such as ENSO and IOD which eventually lead to changes in biological production. After two decades of joint global ocean flux studies (JGOFS), this is the first report on the phytoplankton community from the central Arabian Sea during the SWM. We tried to interlink the north-south gradient in hydrography as well as the physicochemical features with the phytoplankton community structure (within 60 m) along 64° E (11–21° N) during two consecutive SWM cruises (August 2017 and 2018). The variability in surface wind forcing directly influenced the nutrient stoichiometry and phytoplankton dynamics, through the changes in open ocean upwelling and mixing. Significant spatial and inter-annual variability in phytoplankton abundance, diversity, ratios of diatom: dinoflagellate and centric: pennate diatoms were noticed and were closely coupled with the nutrient availability (bottom-up control). Relatively low phytoplankton cell density in 2017 was coupled with high zooplankton biomass (top-down control). During 2018, higher dissolved silicate (DSi) supply due to stronger open-ocean upwelling along with the advection of upwelled water from the Somali coast likely promoted larger diatoms capable of escaping grazing and have led to higher export production. The large centric diatoms occupied the upwelled regions (21–20° N) (e. g. Rhizosolenia imbricata, R. hebetata and Coscinodiscus radiatus) whereas, small pennate diatoms (Pseudo-nitzschia spp., Navicula spp. Nitzschia spp.) and dinoflagellates (Gymnodinium spp.) were pronounced in the south (11–15° N). And while comparing the trends with the JGOFS reports, no considerable community shift was noticed. However, in the context of ongoing climate change, the rapid warming of the Arabian Sea may potentially influence the hydrography and biogeochemistry of this region and thus may impact phytoplankton community structure, trophic transfer, and organic carbon export flux.

Shallow convective mixing promotes massive Noctiluca scintillans bloom in the northeastern Arabian Sea

The northeastern Arabian Sea (NEAS) experiences convective mixing during winter, but this mixing does not reach up to the silicicline, resulting in the limited supply of silicate (Si) compared to nitrate (N) and phosphate (P) to the mixed layer (ML) and formation of non-diatom blooms. The poleward advection of waters of low surface salinity by the West India Coastal Current (WICC) to the NEAS weakens the vertical mixing and reduces the Si input to the mixed layer, resulting in occurrence of Noctiluca scintillans blooms. The saturation of dissolved oxygen in the NEAS varied between 88 and 98%, suggesting N. scintillans blooms occur in oxic conditions. Enhanced cell abundance of N. scintillans was observed in the bloom region in the upper 10 m. Phytoplankton pigments data revealed higher contribution of Chlorophytes, Prasinophytes, Prymnesiophytes and Prochlorophytes in the bloom than non-bloom region. The isotopic composition of nitrogen and carbon of particulate organic matter indicated that natural and in situ processes contributed to both nutrients and organic carbon pool in the NEAS in supporting the massive occurrence of N. scintillans blooms than hitherto hypothesized to anthropogenic sources. This study further suggests that the effect of anthropogenic pollutants released into the NEAS from the mega-cities is limited to the neighbourhood of these cities and does not affect the open ocean.

Detecting phytoplankton diatom fraction based on the spectral shape of satellite‐derived algal light absorption coefficient

AbstractKnowledge about phytoplankton composition is important for biological and biogeochemical research as well as for ecological applications (e.g., water quality) in coastal and inland waters. Satellite remote sensing can potentially map the baseline patterns, anomalies, and trends of phytoplankton composition on a synoptic basis. A prominent challenge is the attribution of the total optical signal to phytoplankton amid interference from minerals and humus. Here, we obtained the phytoplankton light absorption coefficient, aph(λ), in the Chesapeake Bay by partitioning satellite‐derived total light absorption coefficient of water using the generalized stacked‐constraints model (GSCM). We show that the red‐to‐blue band ratio of GSCM‐derived aph(670)/aph(440) can be associated with diatom fraction in Chesapeake Bay. Further, the spatial‐temporal patterns shown in the satellite‐derived diatom fraction data agree well with field studies conducted previously around this region, including low diatom dominance in summer, high diatom dominance in the lower bay in winter, diatom‐dominated spring blooms in coastal waters outside of the bay, and increasing seasonal variability of diatom fraction from the upper to the lower bay. We also found that in the middle bay the summer diatom fraction correlates strongly with spring streamflow on an annual basis, which can be explained because sediment deposited by spring freshets is the main source of silicate supply during summer. These results suggest that the satellite‐derived diatom fraction maps can serve as a baseline for detecting phytoplankton composition anomalies, and highlight the effectiveness of using absorption‐based approach to extract phytoplankton composition information for optically complex waters.

Ecosystem responses to anthropogenic and natural forcing over the last 100 years in the coastal areas of the East China Sea

Ecosystem changes of the coastal areas of the East China Sea (ECS) during the past 30 years have been characterized by increased productivity and increased occurrences of dinoflagellate red tides; both were commonly attributed to be caused by anthropogenic input of nutrients. However, climate-driven regime shifts were found in the Pacific, but they have not been observed in the ECS owing to the lack of continuous high resolution data. Hence, it is still a challenge to distinguish the influences of anthropogenic activities and climate changes on ECS shelf ecosystem. We compare phytoplankton biomarker (brassicasterol, dinosterol, and alkenones) data of five box cores from the coastal area of the ECS, which afford phytoplankton productivity and community structure records at decadal-scale resolution for the last 100 years. Phytoplankton productivity in all cores increased during the past 50 years, but community structure changes showed different trends. Relative diatom contribution revealed a decreasing trend during the past ca. 50 years in cores DH5-1 and CJ43 collected near the Changjiang Estuary, which were likely caused by increased N/Si and N/P ratios, providing conditions more favorable for dinoflagellates growth. In contrast, the relative diatom contribution increased in cores 32, 34, and DH6-3 further away and south of the Changjiang Estuary, suggesting limited influence of the Changjiang water. Instead, diatom increasing trend is likely caused by increased supply of phosphorus and silicate, as a result of larger Kuroshio intrusion flux and the corresponding strengthened coastal upwelling. Therefore, both anthropogenic activities and climate-driven coastal upwelling have contributed to increased productivities, but these two forcing mechanisms have resulted in contrasting community structure changes at different sites in the coastal area of the ECS.

Influence of silicate on enrichment of highly productive microalgae from a mixed culture.

Microalgae have the potential to supply a biobased society with essential feedstocks like sugar and lipids. Besides being productive, strains used for this purpose should grow fast, be resistant to predators, and have good harvestability properties. Diatoms, a class of siliceous algae, have these and other preferred characteristics. In this paper, we describe the enrichment of microalgae in sequencing batch reactors with and without supply of silicate. Both reactors were operated with a light–dark cycle. To maximize storage compound production, carbon fixation and nitrogen uptake were uncoupled by limiting the availability of nitrate to the dark phase. After ten cycles, a stable culture was established in both reactors. The diatom Nitzschia sp. dominated the silicate-rich reactor, and the green algae Chlamydomonas sp. dominated the silicate-depleted reactor. Over the remaining 27 cycles of the experiment, the microalgal community structure did not change, indicating a highly stable system. Although the dominant microalga was highly dependent on the presence of silicate, the performance of both microalgal enrichments was similar. Polymers of glucose were stored during the nitrogen-limited light period. On organic matter dry weight basis, the sugar content of the biomass increased during the light period from 17 ± 4 to 53 ± 4 % for the silicate-limited culture, and from 14 ± 4 to 43 ± 4 % (w w−1) for the silicate excess culture. These results show that storage compound production can be achieved under various conditions, as long as a selective environment is maintained.

Effects of fluctuating temperature and silicate supply on the growth, biochemical composition and lipid accumulation of Nitzschia sp.

Nitzschia sp. (Bacillariophyceae) was grown under temperature and photoperiods mimicking those, typical during summer, spring/fall and winter conditions in the southern United States, and using five silicate (Si) concentrations. In general, higher Si concentrations resulted in higher growth rates in summer and spring/fall conditions and lower organic content. Si-deficient Nitzschia sp. had higher levels of neutral lipid compared to those growing in Si replete media. Under summer conditions, the proportion of saturated fatty acids (SFA) and monounsaturated fatty acids (MUFA) was relatively stable compared with spring/fall and winter conditions, and the proportion of polyunsaturated fatty acids (PUFA) was low. In the winter condition, SFA and MUFA showed a gradient of decreasing abundance while PUFA gradients increased with increasing Si concentrations in the medium. Cumulative productivity (optimization of growth and lipid content) would be best in the spring/fall but less so in the other conditions for this strain of Nitzschia sp.

The fate of riverine nutrients on Arctic shelves

Abstract. Present and future levels of primary production (PP) in the Arctic Ocean (AO) depend on nutrient inputs to the photic zone via vertical mixing, upwelling and external sources. In this regard, the importance of horizontal river supply relative to oceanic processes is poorly constrained at the pan-Arctic scale. We compiled extensive historical (1954–2012) data on discharge and nutrient concentrations to estimate fluxes of nitrate, soluble reactive phosphate (SRP), silicate, dissolved organic carbon (DOC), dissolved organic nitrogen (DON), particulate organic nitrogen (PON) and particulate organic carbon (POC) from 9 large Arctic rivers and assess their potential impact on the biogeochemistry of shelf waters. Several key points can be emphasized from this analysis. The contribution of riverine nitrate to new PP (PPnew) is very small at the regional scale (< 1% to 6.7%) and negligible at the pan-Arctic scale (< 0.83%), in agreement with recent studies. By consuming all this nitrate, oceanic phytoplankton would be able to use only 14.3% and 8.7–24.5% of the river supply of silicate at the pan-Arctic and regional scales, respectively. Corresponding figures for SRP are 28.9% and 18.6–46%. On the Beaufort and Bering shelves, riverine SRP cannot fulfil phytoplankton requirements. On a seasonal basis, the removal of riverine nitrate, silicate and SRP would be the highest in spring and not in summer when AO shelf waters are nitrogen-limited. Riverine DON is potentially an important nitrogen source for the planktonic ecosystem in summer, when ammonium supplied through the photoammonification of refractory DON (3.9 × 109 mol N) may exceed the combined riverine supply of nitrate and ammonium (3.4 × 109 mol N). Nevertheless, overall nitrogen limitation of AO phytoplankton is expected to persist even when projected increases of riverine DON and nitrate supply are taken into account. This analysis underscores the need to better contrast oceanic nutrient supply processes with the composition and fate of changing riverine nutrient deliveries in future scenarios of plankton community structure, function and production in the coastal AO.

Deglacial pulses of deep-ocean silicate into the subtropical North Atlantic Ocean

Growing evidence suggests that the low atmospheric CO2 concentration of the ice ages resulted from enhanced storage of CO2 in the ocean interior, largely as a result of changes in the Southern Ocean. Early in the most recent deglaciation, a reduction in North Atlantic overturning circulation seems to have driven CO2 release from the Southern Ocean, but the mechanism connecting the North Atlantic and the Southern Ocean remains unclear. Biogenic opal export in the low-latitude ocean relies on silicate from the underlying thermocline, the concentration of which is affected by the circulation of the ocean interior. Here we report a record of biogenic opal export from a coastal upwelling system off the coast of northwest Africa that shows pronounced opal maxima during each glacial termination over the past 550,000 years. These opal peaks are consistent with a strong deglacial reduction in the formation of silicate-poor glacial North Atlantic intermediate water (GNAIW). The loss of GNAIW allowed mixing with underlying silicate-rich deep water to increase the silicate supply to the surface ocean. An increase in westerly-wind-driven upwelling in the Southern Ocean in response to the North Atlantic change has been proposed to drive the deglacial rise in atmospheric CO2 (refs 3, 4). However, such a circulation change would have accelerated the formation of Antarctic intermediate water and sub-Antarctic mode water, which today have as little silicate as North Atlantic Deep Water and would have thus maintained low silicate concentrations in the Atlantic thermocline. The deglacial opal maxima reported here suggest an alternative mechanism for the deglacial CO2 release. Just as the reduction in GNAIW led to upward silicate transport, it should also have allowed the downward mixing of warm, low-density surface water to reach into the deep ocean. The resulting decrease in the density of the deep Atlantic relative to the Southern Ocean surface promoted Antarctic overturning, which released CO2 to the atmosphere.

Artificial upwelling to stimulate growth of non-toxic algae in a habitat for mussel farming

Large-scale artificial upwelling was tested as a method to enhance the environmental conditions for the growth of non-toxic algae in a Norwegian fjord (61°0′N, 6°22′E). The experiment was designed to evaluate if nutrient-rich seawater, brought up from below the mixed zone of a stratified fjord to the euphotic zone by air bubbling, would stimulate the growth of non-toxic relative to toxic algae. Pumping 44 m3 min−1 of air at 1 atm through a pipe diffuser submerged at 40 m depth formed a buoyancy flux that lifted 60 m3 s−1 of deep water to the upper 17 m over a period of 21 days. The supply of silicate, inorganic nitrogen and phosphate to the upper 10 m in the fjord increased, and a significant increase in the biomass of non-toxic algae was observed. The upwelling gave an increased growth of the non-toxic dinoflagellates Ceratium furca and C. tripos. After termination of the experiment, the phytoplankton biomass decreased significantly, whereas a distinct increase occurred in the relative biomass of the potentially toxic Dinophysis spp. The result is considered promising when it comes to creating controlled geographical areas with non-toxic food for mussel production.

Contribution of changes in opal productivity and nutrient distribution in the coastal upwelling systems to Late Pliocene/Early Pleistocene climate cooling

Abstract. The global Late Pliocene/Early Pleistocene cooling (~3.0–2.0 million years ago – Ma) concurred with extremely high diatom and biogenic opal production in most of the major coastal upwelling regions. This phenomenon was particularly pronounced in the Benguela upwelling system (BUS), off Namibia, where it is known as the Matuyama Diatom Maximum (MDM). Our study focuses on a new diatom silicon isotope (δ30Si) record covering the MDM in the BUS. Unexpectedly, the variations in δ30Si signal follow biogenic opal content, whereby the highest δ30Si values correspond to the highest biogenic opal content. We interpret the higher δ30Si values during the MDM as a result of a stronger degree of silicate utilisation in the surface waters caused by high productivity of mat-forming diatom species. This was most likely promoted by weak upwelling intensity dominating the BUS during the Late Pliocene/Early Pleistocene cooling combined with a large silicate supply derived from a strong Southern Ocean nutrient leakage responding to the expansion of Antarctic ice cover and the resulting stratification of the polar ocean 3.0–2.7 Ma ago. A similar scenario is hypothesized for other major coastal upwelling systems (e.g. off California) during this time interval, suggesting that the efficiency of the biological carbon pump was probably sufficiently enhanced in these regions during the MDM to have significantly increased the transport of atmospheric CO2 to the deep ocean. In addition, the coeval extension of the area of surface water stratification in both the Southern Ocean and the North Pacific, which decreased CO2 release to the atmosphere, led to further enhanced atmospheric CO2 drawn-down and thus contributed significantly to Late Pliocene/Early Pleistocene cooling.

Phytoplankton sterol contents vary with temperature, phosphorus and silicate supply: a study on three freshwater species

The understanding of environmentally induced changes in the biochemical composition of phytoplankton species is of great importance in both physiological studies and ecological food web research. In extensive laboratory experiments we tested the influence of two different temperatures (10°C and 25°C) and a phosphorus supply gradient on the sterol concentrations of the three freshwater phytoplankton species Scenedesmus quadricauda, Cryptomonas ovata and Cyclotella meneghiniana. The diatom C. meneghiniana was additionally exposed to a silicate gradient. In two separate experiments we analysed (1) possible interactive effects of temperature and phosphorus supply and (2) the effect of four phosphorus levels and three silicate levels on algal sterol concentrations. We observed that sterol concentrations were higher at 25°C than at 10°C in S. quadricauda and C. meneghiniana, but were not affected by temperature in C. ovata. Interactive effects of temperature and phosphorus supply on sterol concentrations were found in C. meneghiniana. This presumably was due to the bioconversion of one sterol (24-methylenecholesterol) into another (22-dihydrobrassicasterol). Increasing phosphorus supply resulted in species-specific effects on sterol concentrations, viz. an optimum curve response in S. quadricauda, a saturation curve response in C. meneghiniana and no change in sterol concentration in C. ovata. Effects of silicate supply on the sterols of C. meneghiniana equalled the effects of phosphorus supply. Albeit we did not observe a general trend in the three phytoplankton species tested, we conclude that sterol concentrations of phytoplankton are strongly affected by temperature and nutrient supply. Interactive effects point out the importance of taking into account more than just one environmental factor when assessing the effects of environmentally induced changes on phytoplankton sterol concentrations.

Turbulent nutrient fluxes in the Iceland Basin

As part of a multidisciplinary cruise to the Iceland Basin in July–August 2007, near to the historical JGOFS Ocean Weather Station India site (∼59° N, ∼19° W), observations were made of vertical turbulent nutrient fluxes around an eddy dipole, a strong mesoscale feature consisting of a cyclonic eddy and an anti-cyclonically rotating mode-water eddy. Investigation of the spatial distribution of vertical turbulent diffusivity around the dipole shows an almost uniform horizontal distribution despite the strong horizontal gradients in water velocity and density observed. An area mean turbulent diffusivity was calculated as 0.21 (95% confidence interval: 0.17–0.26)×10−4 m2 s−1 at the base of the euphotic zone. The vertical turbulent fluxes of three major macro-nutrients into the euphotic zone were calculated as 0.13 (95% confidence interval 0.08–0.22) mmol m−2 day−1 for nitrate, 0.08 (0.05–0.12) mmol m−2 day−1 for silicate and, 8.6 (13.0–5.2 )×10−3 mmol m−2 day−1 for phosphate. The vertical turbulent flux of dissolved iron (dFe) into the euphotic zone was calculated to be 2.6 (95% confidence interval 1.3–4.3)×10−6 mmol m2 day−1. Turbulent macro-nutrient flux is estimated to contribute up to 14% of the deep winter mixing supply of silicate, nitrate and phosphate in the region. The magnitude of turbulent dFe flux is estimated to be at most 8% of the deep winter mixing supply of dFe. Deep winter mixing is hypothesised to supply an adequate amount of iron to fully utilise the deep winter mixed supply of silicate but not the deep winter mixed supply of nitrate. This suggests that while the iron supply may not limit the magnitude of the spring bloom, iron limitation may be occurring post bloom.

Silicon-mediated amelioration of zinc toxicity in rice (Oryza sativa L.) seedlings

Background and aims Silicon (Si) was suggested to enhance plant resistance to toxic elements, and its beneficial role was mainly based on external and internal plant mechanisms. This work aimed at investigating the internal effect of Si on zinc (Zn) detoxification to rice (Oryza sativa L., cv. Tian You 116) seedlings. Methods In a hydroponic experiment, we examined the uptake, xylem loading and localization of Zn in rice seedlings under the condition of 200 μ MZ n contamination with the additional silicate supply at three levels ( 0, 0.5 and 1.8 mM). Results The silicate addition significantly increased the seedling biomass, and decreased Zn concentration in both root and shoot of seedlings and in xylem sap flow. Zinpyr-1 fluorescence test and Energy-dispersive X-ray spectroscopy analysis showed the concentration of biologically active Zn 2+ decreased, and Zn and Si co-localized in the cell wall of metabolically less active tissues, especially in sclerenchyma of root. The fractionation analysis further supported silicate supply increased about 10% the cell wall bound fraction of Zn. Conclusions This study suggests the Si-assisted Zn tolerance of rice is mainly due to the reduction of uptake and translocation of excess Zn, and a stronger binding of Zn in the cell wall of less bioactive tissues might also contribute to some degree.

Estimation of Probable Source for Silicate Supply and Installation Effect in the Actual Sea of Seaweed-breeding Ground Blocks Containing Waste Bamboo Charcoal from Oyster Farming Raft

Estimation of Probable Source for Silicate Supply and Installation Effect in the Actual Sea of Seaweed-breeding Ground Blocks Containing Waste Bamboo Charcoal from Oyster Farming Raft

Phytoplankton growth and regulation in the Labrador Sea: light and nutrient limitation

The importance of light and nutrients in regulating phytoplankton growth in the Labrador Sea was evaluating using climatological data, 12 years of measurements made as part of the Labrador Sea Monitoring Program (LSMP) and physiological information from the literature. Light limits primary production and phytoplankton growth much of the year, even during summer when surface irradiance is at its seasonal peak. Nutrients, nitrogen (nitrate) and silicate, are reduced to low levels in surface waters in summer/autumn and can limit phytoplankton production and growth at this time of year. Nitrate appears to be the nutrient in shortest supply on the Labrador Shelf while silicate is in shortest supply in the central Labrador Basin. Multiyear trends in regional hydrography (increases in water temperatures, decreases in mixed layer depth) and changes in nitrate and silicate supply over the past decade (i.e. increases in nitrate and decreases in silicate) may be linked to changes in phytoplankton community composition and structure (i.e. decreases in large forms such as diatoms and increases in small picoplankton and nanoplankton forms).

Sea ice, hydrological, and biological processes in the Churchill River estuary region, Hudson Bay

A conceptual scheme for the transition from winter to spring is developed for a small Arctic estuary (Churchill River, Hudson Bay) using hydrological, meteorological and oceanographic data together with models of the landfast ice. Observations within the Churchill River estuary and away from the direct influence of the river plume (Button Bay), between March and May 2005, show that both sea ice (production and melt) and river water influence the region's freshwater budget. In Button Bay, ice production in the flaw lead or polynya of NW Hudson Bay result in salinization through winter until the end of March, followed by a gradual freshening of the water column through April–May. In the Churchill Estuary, conditions varied abruptly throughout winter–spring depending on the physical interaction among river discharge, the seasonal landfast ice, and the rubble zone along the seaward margin of the landfast ice. Until late May, the rubble zone partially impounded river discharge, influencing the surface salinity, stratification, flushing time, and distribution and abundance of nutrients in the estuary. The river discharge, in turn, advanced and enhanced sea ice ablation in the estuary by delivering sensible heat. Weak stratification, the supply of riverine nitrogen and silicate, and a relatively long flushing time (∼ 6 days) in the period preceding melt may have briefly favoured phytoplankton production in the estuary when conditions were still poor in the surrounding coastal environment. However, in late May, the peak flow and breakdown of the ice-rubble zone around the estuary brought abrupt changes, including increased stratification and turbidity, reduced marine and freshwater nutrient supply, a shorter flushing time, and the release of the freshwater pool into the interior ocean. These conditions suppressed phytoplankton productivity while enhancing the inventory of particulate organic matter delivered by the river. The physical and biological changes observed in this study highlight the variability and instability of small frozen estuaries during winter–spring transition, which implies sensitivity to climate change.

Pelagic functional group modeling: Progress, challenges and prospects

In this paper, we review the state of the art and major challenges in current efforts to incorporate biogeochemical functional groups into models that can be applied on basin-wide and global scales, with an emphasis on models that might ultimately be used to predict how biogeochemical cycles in the ocean will respond to global warming. We define the term “biogeochemical functional group” to refer to groups of organisms that mediate specific chemical reactions in the ocean. Thus, according to this definition, “functional groups” have no phylogenetic meaning—these are composed of many different species with common biogeochemical functions. Substantial progress has been made in the last decade toward quantifying the rates of these various functions and understanding the factors that control them. For some of these groups, we have developed fairly sophisticated models that incorporate this understanding, e.g. for diazotrophs (e.g. Trichodesmium), silica producers (diatoms) and calcifiers (e.g. coccolithophorids and specifically Emiliania huxleyi). However, current representations of nitrogen fixation and calcification are incomplete, i.e., based primarily upon models of Trichodesmium and E. huxleyi, respectively, and many important functional groups have not yet been considered in open-ocean biogeochemical models. Progress has been made over the last decade in efforts to simulate dimethylsulfide (DMS) production and cycling (i.e., by dinoflagellates and prymnesiophytes) and denitrification, but these efforts are still in their infancy, and many significant problems remain. One obvious gap is that virtually all functional group modeling efforts have focused on autotrophic microbes, while higher trophic levels have been completely ignored. It appears that in some cases (e.g., calcification), incorporating higher trophic levels may be essential not only for representing a particular biogeochemical reaction, but also for modeling export. Another serious problem is our tendency to model the organisms for which we have the most validation data (e.g., E. huxleyi and Trichodesmium) even when they may represent only a fraction of the biogeochemical functional group we are trying to represent. When we step back and look at the paleo-oceanographic record, it suggests that oxygen concentrations have played a central role in the evolution and emergence of many of the key functional groups that influence biogeochemical cycles in the present-day ocean. However, more subtle effects are likely to be important over the next century like changes in silicate supply or turbulence that can influence the relative success of diatoms versus dinoflagellates, coccolithophorids and diazotrophs. In general, inferences drawn from the paleo-oceanographic record and theoretical work suggest that global warming will tend to favor the latter because it will give rise to increased stratification. However, decreases in pH and Fe supply could adversely impact coccolithophorids and diazotrophs in the future. It may be necessary to include explicit dynamic representations of nitrogen fixation, denitrification, silicification and calcification in our models if our goal is predicting the oceanic carbon cycle in the future, because these processes appear to play a very significant role in the carbon cycle of the present-day ocean and they are sensitive to climate change. Observations and models suggest that it may also be necessary to include the DMS cycle to predict future climate, though the effects are still highly uncertain. We have learned a tremendous amount about the distributions and biogeochemical impact of bacteria in the ocean in recent years, yet this improved understanding has not yet been incorporated into many of our models. All of these considerations lead us toward the development of increasingly complex models. However, recent quantitative model intercomparison studies suggest that continuing to add complexity and more functional groups to our ecosystem models may lead to decreases in predictive ability if the models are not properly constrained with available data. We also caution that capturing the present-day variability tells us little about how well a particular model can predict the future. If our goal is to develop models that can be used to predict how the oceans will respond to global warming, then we need to make more rigorous assessments of predictive skill using the available data.

Regional variations in the fluxes of foraminifera carbonate, coccolithophorid carbonate and biogenic opal in the northern Indian Ocean

Mass fluxes of diatom opal, planktonic foraminifera carbonate and coccolithophorid carbonate were measured with time-series sediment traps at six sites in the Arabian Sea, Bay of Bengal and Equatorial Indian Ocean (EIOT). The above fluxes were related to regional variations in salinity, temperature and nutrient distribution. Annual fluxes of diatom opal range between 3 and 28 g m −2 yr −1, while planktonic foraminifera carbonate fluxes range between 6 and 23 g m −2 yr −1 and coccolithophorid carbonate fluxes range between 4 and 24 g m −2 yr −1. Annual planktonic foraminifera carbonate to coccolithophorid carbonate ratios range between 0.8 and 2.2 and coccolithophorid carbonate to diatom opal ratios range between 0.5 and 3.3. In the western Arabian Sea, coccolithophorids are the major contributors to biogenic flux during periods of low nutrient concentrations. Coccolithophorid carbonate fluxes decrease and planktonic foraminiferal carbonate and diatom opal fluxes increase when nutrient-rich upwelled waters are advected over the trap site. In the oligotropic eastern Arabian Sea, coccolithophorid carbonate fluxes are high throughout the year. Planktonic foraminiferal carbonate fluxes are the major contributors to biogenic flux in the EIOT. In the northern and central Bay of Bengal, when surface salinity values drop sharply during the SW monsoon, there is a drastic reduction in planktonic foraminiferal carbonate fluxes, but coccolithophorid carbonate and diatom opal fluxes remain steady or continue to increase. Distinctly higher annual molar Si bio/C inorg (>1) and C org/C inorg (>1.5) ratios are observed in the northern and central Bay of Bengal mainly due to lower foraminiferal carbonate production as a result of sharp salinity variations. We can thus infer that the enhanced freshwater supply from rivers should increase oceanic CO 2 uptake. Its silicate supply favours the production of diatoms while the salinity drop produces conditions unfavourable for most planktonic foraminifera species.