Suitable Cavities Research Articles

Tree cavity density is a limiting factor for a secondary cavity nester in second-growth Andean temperate rainforests

Abstract Cavity-nesting bird populations are most frequently limited by the number of tree cavities available in second-growth forests. However, this possible limitation of a key resource is less clear in old-growth forests. We compared forest attributes (i.e., basal area, density of larger trees, density of dead trees, and tree cavity density) in second-growth and old-growth stands in Andean temperate rainforests in southern Chile. To examine the role of nest-site availability in limiting the populations of Aphrastura spinicauda (Thorn-Tailed Rayadito), a secondary cavity-nesting bird species, we conducted an experiment in which nest boxes were added and removed in old-growth and second-growth forests during a 5-yr period (2008–2013). In old-growth forests, as compared to second-growth forests, we found a more than double basal area (99.6 vs. 43.7 m2 ha–1), a three times higher density of larger trees (88.2 vs. 36.4 trees ha–1), and a 1.5 times higher number of small cavities (25.9 vs. 10.3 cavities ha–1). The density of cavities also strongly increased with tree diameter and basal area. In second-growth forests, A. spinicauda showed a strong response to the addition and removal of nest boxes, with population abundance increasing by 13% and then decreasing by 50%, respectively. In contrast, we found no impact in old-growth stands. Our experiment emphasizes the importance of maintaining large and dead trees in second-growth, disturbed, and managed forests. These trees provide suitable cavities for A. spinicauda, and likely many other secondary cavity nesters, increasing their abundances in a Globally significant Biodiversity Hotspot in southern South America.

Nest site selection of cavity-nesting birds at Jahangirnagar University campus, Bangladesh

Understanding nest site selection by cavity-nesting birds is important for their conservation implications. We examined the preferences and characteristics of nesting trees and cavities used by cavity-nesting birds at Jahangirnagar University (JU) campus from January 2020 to October 2021. A total of 30 tree- cavity nests of 11 species of birds belonging to 4 orders and 7 families were recorded where 36% were primary excavators and 64% were secondary cavity-nesters. Out of 14 species of trees used in cavity-nesting, the most of the nests were built in Mahogany Swietenia mahagoni (n=8) followed by White siris Albizia procera (n=6) and Rain tree Samania saman (n=3). Diameter at breast height (DBH) of the nesting trees varied from 27 cm to 112 cm (52±23.2 cm). The highest mean DBH was recorded in Samania saman (85 cm) followed by Swietenia mahagoni (67 cm). Common Myna showed the widest selection of nesting tree species (n=9) followed by Black-rumped Flameback (n=4) and Lineated Barbet (n=4). Majority of the nesting trees (87%) were found in roadside (within 1-5 m) vegetation while 60% nesting trees located within 30 m from the nearby water bodies. The cavity-nesting species preferred to nest between 2 m to 12 m (5.2±2.6 m) height from the ground level. The entrance width and the depth of tree holes (n=30) used by cavity-nesters varied from 5 cm to 22 cm (7.5±3.5 cm) and 13 cm to 45 cm (23.2±6.5 cm), respectively. Suitable cavities are critical for reproductive success of cavity-nesting birds and our results highlight the conservation value of cavity-bearing large trees to maintain a healthy population of cavity-nesting birds at JU campus. Jahangirnagar University J. Biol. Sci. 12(1 & 2): 1-10, 2023 (June & December)

On the halide aggregation into the [Au4(PPh3)4]4+ cluster core. Insights from structural, optical and interaction energy analysis in [(Ph3PAu)4X2]2+ and [(Ph3PAu)4X]3+ species (X = Cl-, Br-, I-).

The aggregation of halide atoms into gold clusters offers an interesting scenario for the development of novel metal-based cavities for anion recognition and sensing applications. Thus, further understanding of the different contributing terms leading to efficient cluster-halide aggregation is relevant to guide their synthetic design. In this report, we evaluate the formation of [(Ph3PAu)4X2]2+ and [(Ph3PAu)4X]3+ species (X = Cl-, Br-, I-) in terms of different energy contributions underlying the stabilization of the cluster-halide interaction, and the expected UV-vis absorption profiles as a result of the variation in frontier orbital arrangements. Our results denote that a non-planar Au4 core shape enables enhanced halide aggregation, which is similar for Cl-, Br-, and I-, in comparison to the hypothetical planar Au4 counterparts. The electrostatic nature of the interaction involves a decreasing ion-dipole term along with the series, and for iodine species, higher-order electrostatic contributions become more relevant. Hence, the obtained results help in gaining further understanding of the different stabilizing and destabilizing contributions to suitable cluster-based cavities for the incorporation of different monoatomic anions.

Manipulating the Host-Guest Chemistry of Cucurbituril to Propel Highly Reversible Zinc Metal Anodes.

Rechargeable aqueous zinc-ion batteries are practically plagued by the short lifespan and low Coulombic efficiency (CE) of Zn anodes resulting from random dendrite deposition and parasitic reactions. Herein, the host-guest chemistry of cucurbituril additive with Zn2+ to achieve longstanding Zn anodes is manipulated. The macrocyclic molecule of cucurbit[5]uril (CB[5]) is delicately designed to reconstruct both the CB[5]-adsorbed electric-double layer (EDL) structure at the Zn interface and the hydrated sheath of Zn2+ ions. Especially benefiting from the desirable carbonyl rims and suitable hydrophobic cavities, the CB[5] has a strong host-guest interaction with Zn2+ ions, which exclusively permits rapid Zn2+ flux across the EDL interface but retards the H2O radicals and SO4 2-. Accordingly, such a unique particle redistributor warrants long-lasting dendrite-free deposition by homogenizing Zn nucleation/growth and significantly improved CE by inhibiting side reactions. The Zn anode can deliver superior reversibility in CB[5]-containing electrolyte with a ninefold increase of cycle lifetime and an elevated CE of 99.7% under harsh test conditions (10mAcm-2/10mAhcm-2). The work opens a new avenue from the perspective of host-guest chemistry to propel the development of rechargeable Zn metal batteries and beyond.

Mask-Free Patterned Perovskite Microcavity Arrays via Inkjet Printing Targeting Laser Emission.

Perovskite materials are promising candidates for the implementation of electrically pumped lasers considering the enhanced performance of perovskite-based light-emitting diodes. Nonetheless, current methods of fabricating perovskite optical microcavities require complex patterning technologies to build suitable resonant cavities for perovskite laser emission, burdening the device structure design. To address this issue, we applied inkjet printing, a maskless patterning technique, to directly create spontaneous formations of polycrystalline perovskite microcavity arrays to explore their laser-emitting action. The substrate surface tension was tuned to modulate the perovskite crystallization process in combination with optimization of printing ink recipes. As a result, polycrystalline perovskite microcavity arrays were achieved, contributing to the laser emission at 528 nm with a lasing threshold of 1.37 mJ/cm2, while simultaneously achieving high-definition patterning of flexible display. These results clearly illustrate the efficiency of inkjet printing technology in the preparation of polycrystalline perovskite optical microcavities and promote the development of flexible laser arrayed displays, providing a facile process toward the realization of perovskite-cavity laser devices.

Fire‐mediated tree cavity reduction needs to be considered in reintroduction strategies for a critically endangered bird

Fire is an important agent of tree cavity creation and loss in some forest ecosystems. Even though cavity‐bearing trees may be replaced over decades post fire, cavity‐nesting animals depend on uninterrupted access to suitable nesting sites. Balancing the impacts of fire on the availability and recruitment of suitable tree cavities for wildlife is important. We studied fire effects on trees with suitable nests for Critically Endangered Orange‐bellied Parrots Neophema chrysogaster to evaluate how to optimize suitable cavity availability both now and into the future. We used field surveys to quantify the age‐class distribution of trees across the species' historical range, and climbed them to reveal that only 16% of Smithton peppermints Eucalyptus nitida supported a potentially suitable nest cavity. We incorporated this information into a simulation that explored the impacts of fire on the occurrence of nest trees over a century under different fire regimes. We predicted that more frequent and severe fires resulted in lower probabilities of persistence of nesting sites for Orange‐bellied Parrots. Management of the foraging habitat of Orange‐bellied Parrots requires regular burning of moorlands adjacent to the forests where they nest. Our simulations show that preventing regular burning of these forests is important to maximize the probability of persistence of nesting habitat for Orange‐bellied Parrots. We show that by incorporating field data on the true availability of habitat, it is possible to simulate the uncertain impacts of fire on future perpetuation of suitable nesting cavities for wildlife.

Temporal change in abundance of potential nesting cavities for wood ducks (Aix sponsa) in Northern Minnesota, United States

Wood duck females often nest in tree cavities located in large-diameter deciduous trees. Temporal changes in forest age and composition during recent decades may have influenced the abundance of stems with suitable nesting cavities in the forested portion of Northern MN, United States. Thus, we ascertained whether temporal changes in the abundance of such stems occurred in this area during six Forest Inventory and Analysis (FIA) evaluation cycles (i.e., 1977 to 2015–2019). We used FIA data and independently estimated proportions of stems with suitable cavities in different tree-species, health-status, and diameter classes to estimate change in the abundance of such stems at three spatial scales. These spatial scales increased in areal extent from a study area to three ecological subsections to the Laurentian Mixed Forest ecological province. We used a Bayesian analytical approach to accommodate changes in FIA protocols among cycles. Both the abundance of stems with suitable cavities and an attribute associated with cavity occurrence changed during the analysis period, but findings were not entirely consistent among spatial scales. The estimated abundance of both suitable stems overall and those of late-successional tree species generally increased at all scales during the analysis period. Since 1990, increases in the abundance of health-impacted stems that were suitable for nesting occurred at all spatial scales. Our estimated densities of suitable stems during the 2005–2009 (1.20 [85% CrI: 1.04–1.39] suitable stems / ha) and 2015–2019 cycles (1.41 [85% CrI: 1.21–1.63] suitable stems / ha) were substantially greater than the <0.25 and 0.25–0.49 suitable stems / ha another study predicted would occur in Northern Minnesota during 2008 and 2018, respectively. Our results can inform forest management decisions and research directions for follow-up studies of nesting wood ducks.

Morpholine-Functionalized Multicomponent Metallacage as a Vector for Lysosome-Targeted Cell Imaging

Metallacages with suitable cavities and specific functions are promising delivery vectors in biological systems. Herein, we report a morpholine-functionalized metallacage for lysosome-targeted cell imaging. The efficient host-guest interactions between the metallacage and dyes prevent them from aggregation, so their emission in aqueous solutions is well maintained. The fluorescence quantum yield of these host-guest complexes reaches 74.40%. Therefore, the metallacage is further employed as a vector to deliver dyes with different emission colors (blue, green, and red) into lysosomes for targeted imaging. This research affords a type of vector for the delivery of various cargos toward biological applications, which will enrich the usage of metallacages in biomedical engineering.

Effect of forest logging on food availability, suitable nesting habitat, nest density and spatial pattern of a Neotropical parrot

Secondary cavity nesters, bird species that rely on the presence of existing cavities, are highly vulnerable to anthropogenic and stochastic processes that reduce the availability of cavity bearing trees. The most common logging practice in Neotropical forests is selective logging, where a few valuable tree species are logged, primarily old, large trees that are the most prone to develop cavities and produce larger amounts of fruits and seeds. Tucuman Amazon, Amazona tucumana, is a threatened parrot that relies on the tree-cavities and food provided by large, old trees. Our objective was to evaluate how logging affects 1) stand and nest plot forest structure, 2) nesting site selection, 3) food availability, 4) density of suitable cavities, 5) nest density, and 6) nest spatial pattern of Tucuman Amazon by comparing a mature undisturbed forest in a National Park (NP) vs a logged forest (LF). We determined the availability of suitable cavities and food resources consumed by Tucuman Amazon, and we compared nest density and spatial pattern of nests between NP vs LF. The Index of food availability for all tree species consumed by Tucuman Amazon and for P. parlatorei were significantly higher in NP than in LF (34.5 ± 13.3 m ha−1 vs. 3.5 ± 1.0 m ha−1 and 5.6 ± 2.3 m ha−1 vs. 1.2 ± 1.0 m ha−1, respectively). Density of suitable cavities for nesting in the NP was significantly higher than in the LF: 4.6 cavities ha−1 [C.I. 95 %: 3.07 – 7.04 cavities ha−1] vs. 1.1 cavities ha−1 [C.I. 95 %: 0.73 – 1.66 cavities ha−1], respectively. Mean density of Tucuman Amazon nests was significantly higher in the NP than in LF (0.25 ± 0.04 vs. 0.06 ± 0.04 nest ha−1, respectively). Food availability is an important factor that affects Tucuman Amazon populations and when food is not limiting, the availability of suitable cavities and territorial behavior could play a role in regulating nest density. When evaluating the limiting factors for secondary cavity-nesting species of conservation concern it is important to evaluate the interplay of a set of potential limiting factors to propose sound forest management recommendations.

Productivity constraints on Citron-crested Cockatoos in a rich community of large hole-nesting birds

Knowledge of breeding success and its limiting factors is crucial in assessing species’ conservation needs. As cavity-nesters, parrots are particularly influenced by the availability of suitable cavities and low breeding output, whether due to natural processes or trapping. On the island of Sumba, Indonesia, the Critically Endangered Citron-crested Cockatoo (Cacatua citrinocristata) has the added problem of co-existing with an unusually rich hole-nesting bird community in a forested environment much constrained by habitat loss. We monitored 95 nesting cavities of cockatoos and their competitors and potential nest-predators, over one to four breeding seasons, using a combination of camera-traps, direct checks on nest contents, and observations from the ground. Competition for suitable cavities was intense among three large parrot species, two owls and a hornbill. Visitation rates by potential competitors were higher at unoccupied cavities than at those containing active nests, reflecting the guarding behaviour of the occupants. The Endangered Sumba Hornbill (Rhyticeros everetti) dominated observed direct confrontations and was the most frequent visitor to active parrot nests, suggesting a further role as a potential nest-predator. Cockatoos prospected many cavities but rarely then attempted to nest: instead the sites were usually occupied by other cavity-nesters, or by bees. At the few cavities where cockatoos did breed, predation pressure was likely low, and observed success rate high (10 successful of 15 nests), although the low number of nests found early in the breeding cycle suggests that some may have failed before detection. Intense competition for cavities suggests a shortage of suitable nest-sites, the need for preservation of old hole-bearing trees and a role for nestboxes. Accessible, known, safe artificial nest-sites would also provide opportunities to assess the scale of nest-site shortage, allow camera placements to study productivity, exclude some competitors and predators, and prevent illegal trapping. Especially given continued trapping pressure, the species would benefit from targeted local awareness-raising and law enforcement, with the whole endeavour backed up by longer-term forest restoration.

Graphdiyne-like Porous Organic Framework as a Solid-Phase Sulfur Conversion Cathodic Host for Stable Li-S Batteries.

As a unique branch of Li-S batteries, solid-phase sulfur conversion polymer cathodes have shown superior stability with fast ion-transfer kinetics and high discharge capacities owing to the mere existence of short-chain sulfur species during charging/discharging. However, representative compounds such as sulfurized polyacrylonitrile (SPAN) and polyaniline (SPANI) suffer from low sulfur contents and poor cycling performances under large current densities due to the sulfurization occurring only on polymers' surface. Here, a graphdiyne-like porous organic framework, denoted as GPOF, is synthesized and used as a host for enabling solid-phase sulfur conversion. Plenty of unsaturated bonds in GPOF provide sufficient reaction sites to bind sulfur chains, resulting in a high active sulfur content in the cathode. Moreover, the microporous GPOF possesses suitable cavities to accommodate the volume expansion, leading to favorable long-term cycling stability. As a result, the sulfurized GPOF cathode (SGPOF-320) displays outstanding electrochemical stability with negligible capacity decline after 250 cycles at 0.2 C with an average discharge capacity of 925 mA h g-1. Our work applies a facile procedure to produce sulfur conversion porous polymer cathodes, which could provide a proper way for exploring more suitable cathode materials for high-performance Li-S batteries.

LiDAR and multispectral imagery predict the occurrence of tree cavities suitable for a cavity‐nesting duck

AbstractTree cavities are an essential habitat component for wildlife species across diverse taxa, from insects to large mammals. Many of these species are imperiled by loss of cavities. Further, conservation action is hindered by limited information on the spatial distribution of cavities, largely due to difficulties in developing useful models of their presence or abundance. Accurately predicting the fine‐scale, landscape‐wide, spatial distribution of these important habitat features would greatly benefit conservation measures. In this study, we evaluated the efficacy of using remotely sensed data, including LiDAR, multispectral imagery, and SAR, to predict the locations of cavities suitable for nesting Wood Ducks Aix sponsa at fine scales (≤40 × 40 m) and across a broad landscape (~254 000 ha). We used Random Forest models to classify the presence–absence of cavities at four spatial scales of prediction (5, 10, 20, and 40‐m pixels) as well as three groupings of predictor variables (LiDAR‐derived metrics, spatial forest‐inventory variables [derived via LiDAR or imagery], and ancillary remotely sensed data [derived via SAR or imagery]), and then compared the accuracy between models. The 20‐m response‐scale had the highest accuracy. Variables from each of the groupings were important and largely relied on multispectral imagery and LiDAR data. Our final model and predictive map had 84% overall Out of Bag accuracy and, when tested with an independent cavity dataset, correctly identified 80% of trees with suitable cavities as presences. The predictive map can be used by researchers and land‐managers to determine how past management actions have affected cavity availability as well as the locations of habitat complexes for Wood Ducks and, potentially, other secondary‐cavity‐nesting wildlife. In addition, our analysis can serve as a methodological case‐study for cavity‐nesting wildlife in other regions, as the use of remotely sensed data like high‐density LiDAR and multispectral imagery increases.

Abundant Natural Cavities in a Deciduous Forest Leads to a Lack of Nest-Box Occupancy by Northern Saw-Whet Owls

Nest boxes are commonly used for species that utilize tree cavities, including small owls. Boxes were installed in 2011 to facilitate study of Northern Saw-whet Owls in Pennsylvania. We checked the 11 boxes that remained in 2020 after a hiatus of 8 years and found 3 rodent nests, but no evidence of owl usage. Playbacks revealed owls were present at 8 of 11 boxes checked. Cavity surveys yielded an average of 7.7 large cavities within 50 m of each box; extrapolation of cavity densities to a minimal territory size of 150 ha suggested that suitable cavities are an abundant, non-limiting resource here. Cavity abundance was likely a consequence of beech bark disease complex having recently top-killed most large American Beech trees locally, providing abundant resources for excavating woodpeckers. Assessing cavity abundance should be an essential first step for any management project involving cavity-nesting birds, and nest boxes should be used only in situations where cavities appear to be limited.

Binding of hydroxychloroquine and chloroquine dimers to palmitoyl-protein thioesterase 1 (PPT1) and its glycosylated forms: a computational approach

The lysosomal enzyme palmitoyl-protein thioesterase 1 (PPT1) removes thioester-linked fatty acid groups from membrane-bound proteins to facilitate their proteolysis. A lack of PPT1 (due to gene mutations) causes the progressive death of cortical neurons and is responsible for infantile neural ceroid lipofuscinosis (INCL), a severe neurodegenerative disorder in children. Conversely, PPT1 is often over-expressed in cancer, and considered as a valid target to control tumor growth. Potent and selective inhibitors of PPT1 have been designed, in particular 4-amino-7-chloro-quinoline derivatives such as hydroxychloroquine (HCQ) and the dimeric analogues Lys05 and DC661. We have modeled the interaction of these three compounds with the enzyme, taking advantage of the PPT1 crystallographic structure. The molecules can fit into the palmitate site of the protein, with the dimeric compounds forming more stable complexes than the monomer. But the molecular modeling suggests that the most favorable binding sites are located outside the active site. Two sites centered on residues Met112 and Gln144 were identified, offering suitable cavities for drug binding. According to the calculated empirical energies of interaction (ΔE), the dimer DC661 forms the most stable complex at site Met112 of palmitate-bound PPT1. N-glycosylated forms of PPT1 were elaborated. Paucimannosidic glycans (M2FA and M3F) and a bulkier tetra-antennary complex glycan were introduced at asparagine residues N197, N212 and N232. These N-glycans do not impede drug binding, thus suggesting that all glycoforms of PPT1 can be targeted with these compounds. Communicated by Ramaswamy H. Sarma

Efficient CO2/CO separation in a stable microporous hydrogen-bonded organic framework.

We herein realize the first example of using a microporous HOF material (ZJU-HOF-1) with suitable pore cavities for highly efficient CO2/CO separation under dry and humid conditions.

Coloring ultrasensitive MRI with tunable metal-organic frameworks.

As one of the most important imaging modalities, magnetic resonance imaging (MRI) still faces relatively low sensitivity to monitor low-abundance molecules. A newly developed technology, hyperpolarized 129Xe magnetic resonance imaging (MRI), can boost the signal sensitivity to over 10 000-fold compared with that under conventional MRI conditions, and this technique is referred to as ultrasensitive MRI. However, there are few methods to visualize complex mixtures in this field due to the difficulty in achieving favorable “cages” to capture the signal source, namely, 129Xe atoms. Here, we proposed metal–organic frameworks (MOFs) as tunable nanoporous hosts to provide suitable cavities for xenon. Due to the widely dispersed spectroscopic signals, 129Xe in different MOFs was easily visualized by assigning each chemical shift to a specific color. The results illustrated that the pore size determined the exchange rate, and the geometric structure and elemental composition influenced the local charge experienced by xenon. We confirmed that a complex mixture was first differentiated by specific colors in ultrasensitive MRI. The introduction of MOFs helps to overcome long-standing obstacles in ultrasensitive, multiplexed MRI.

Microregulation of Pore Channels in Covalent-Organic Frameworks Used for the Selective and Efficient Separation of Ethane

The removal of low content of ethane (C2H6) from ethylene (C2H4) using C2H6-selective adsorbents to reduce the energy consumption in the petrochemical industry is one of the meaningful and challenging tasks in separation research. Herein, we report for the first time the systematic research of covalent-organic frameworks (COFs) as a platform used for the separation of light hydrocarbons based on their specific topology. Benefiting from its richly distributed weakly polar surface and suitable pore cavities, COF-1 exhibits the highest adsorption selectivity (1.92 at 298 K and 1 bar) for the C2H6/C2H4 mixture among the COFs studied. Density functional theory calculations clearly revealed that COF-1 can exhibit multiple C-H···π interactions with ethane in its suitable pore environment and thus preferentially binds to ethane over ethylene. Finally, breakthrough experiments proved that COF-1 may be regarded as an effective porous adsorbent with polymer-grade C2H4 obtained directly from C2H6/C2H4 mixtures at 298 K and 1 bar.

Suitable nesting sites for specialized cavity dependent wildlife are rare in woodlands

Non-excavating species that prefer rare combinations of cavity traits are limited to only a fraction of the available tree cavity resource. Understanding animal preferences and quantifying the abundance of suitable cavities is fundamental to protecting non-excavators. We aimed to identify the traits of trees and cavities selected by a vulnerable, non-excavating bird, the superb parrot Polytelis swainsonii. We also evaluated cavity abundance and the accuracy of ground-based survey techniques (where an observer estimated the number of cavities in the canopy with binoculars from the ground). We then climbed trees to accurately identify true cavities and to measure their internal dimensions. Ground-based counts of tree cavities were correlated with the true number of cavity entrances in trees. When trees had zero cavities, ground counts overestimated their abundance, but for cavity-bearing trees ground counts underestimated their abundance. We found that superb parrot nest trees contained more cavities than random trees. Superb parrots selected cavities that were deeper, with wider floors and entrance sizes than random cavities. Cavities with the combination of selected traits comprised only 0.5% of the standing cavity resource. Our results confirm that non-excavators can be very selective about the types of trees and cavities they use for nesting. Rarity of suitable cavities may be a factor limiting the population growth and recovery of superb parrots. Without accounting for the critical information gap between what is observed on the ground, and what is in fact present in trees, effective habitat management for non-excavators may be compromised by inaccurate assessments of cavity abundance and conservation status.

A timeline for the urbanization of wild birds: The case of the lesser kestrel

The Lesser kestrel (Falco naumanni) evolved as a separate species in the Old-World kestrel radiation starting in the late Miocene. Given that the first cities were erected in the Holocene, this urban colonial raptor has only become a major town dweller recently in its evolutionary history. Today, more than 95% of lesser kestrel colonies in Spain and other Mediterranean countries are on buildings, and the remaining few are on rocky outcrops, that may have been the original nesting substrate for this cavity-nesting bird. Lesser kestrel fossils are well represented in cave sites, and their paleontological distribution, spanning from the Early Paleolithic to the Epipaleolithic, agrees well with its current breeding distribution. According to classical sources, such as the works of Columella and Pliny the Elder, and the presence of a skeletal remain in a Roman villa near Madrid, lesser kestrels may have nested in buildings and in urban settings for at least 2000–2500 years. However, there are no surviving colonies in structures older than 1400 years in Andalusia, nor in Spain. For a sample of 349 colonies on ancient buildings, a majority of the structures had been erected between the 15th and 17th centuries, this putting a time limit of about 300-600 years to the existence of those seemingly immemorial colonies. For specific towns and buildings, written references for the presence of lesser kestrel colonies do not go back more than two centuries. In fact, the Cathedral of Sevilla may be the structure with the longest continuous occupation by lesser kestrels recorded up to present time, from 1834 to 2020. Lesser kestrels were possibly too common in human settlements in the past as to be noted as special. This may explain the scarcity of references to the species until the 19th century. In any case, the same lack of information affects the other major Eurasian urban birds, as no timeline exist for the urbanization process of any other bird species. We propose that lesser kestrels became urban breeders when both adequate cavities in buildings and cereal fields, where they capture their invertebrate prey, became available in their breeding range, several millennia ago. However, urban colonies, in contrast with the ones on stable geological substrates, have been forced to move from building to building when older ones became ruinous or were rebuilt, but new structures with suitable cavities became available throughout History.

NMR fragment screening reveals a novel small molecule binding site near the catalytic surface of the disulfide-dithiol oxidoreductase enzyme DsbA from Burkholderia pseudomallei.

The presence of suitable cavities or pockets on protein structures is a general criterion for a therapeutic target protein to be classified as 'druggable'. Many disease-related proteins that function solely through protein-protein interactions lack such pockets, making development of inhibitors by traditional small-molecule structure-based design methods much more challenging. The 22kDa bacterial thiol oxidoreductase enzyme, DsbA, from the gram-negative bacterium Burkholderia pseudomallei (BpsDsbA) is an example of one such target. The crystal structure of oxidized BpsDsbA lacks well-defined surface pockets. BpsDsbA is required for the correct folding of numerous virulence factors in B. pseudomallei, and genetic deletion of dsbA significantly attenuates B. pseudomallei virulence in murine infection models. Therefore, BpsDsbA is potentially an attractive drug target. Herein we report the identification of a small molecule binding site adjacent to the catalytic site of oxidized BpsDsbA. 1HN CPMG relaxation dispersion NMR measurements suggest that the binding site is formed transiently through protein dynamics. Using fragment-based screening, we identified a small molecule that binds at this site with an estimated affinity of KD ~ 500µM. This fragment inhibits BpsDsbA enzymatic activity in vitro. The binding mode of this molecule has been characterized by NMR data-driven docking using HADDOCK. These data provide a starting point towards the design of more potent small molecule inhibitors of BpsDsbA.