Subtropical Marine Environments Research Articles

Metal concentrations in echinoderms: Assessing bioindicator potential and ecological implications

This study investigates the concentrations of heavy metals and trace elements in five echinoderm species: Holothuria (Platyperona) sanctori, Arbacia lixula, Coscinasterias tenuispina, Ophioderma longicaudum, and Antedon bifida. Given their ecological significance and potential as a food source, understanding the presence and transfer of heavy metals in these species is crucial. Sampling was conducted in 2022 in Canary Islands. Analysis using ICP-OES revealed concentrations of Zn, Cd, Pb, Cu, Ni, Cr, and Fe in mg/kg. The results showed a consistent sequence of metals across all species, with Fe > Zn > Cu > Ni > Cr > Pb > Cd. Holothurians exhibiting the highest levels, followed by sea urchins. Starfish and brittle stars showed similar, lower concentrations, while crinoids exhibited the lowest levels, consistent with their filter-feeding behavior. The findings highlight the potential of holothurians as bioindicators for environmental pollutants. Understanding the role of these echinoderms as bioindicators is essential for assessing ecosystem health and informing conservation efforts in subtropical marine environments.

Degradation efficiency of biodegradable plastics in subtropical open-air and marine environments: Implications for plastic pollution

Bioplastics are increasingly used as a solution to tackle plastic pollution problems. However, their degradability in natural environments is currently under debate. To evaluate their degradation efficiencies, we conducted in-situ degradation experiments in an open-air and two marine environments in Hong Kong. Three groups of biodegradable plastic were tested, namely (1) additive-modified low-density polyethylene (LDPE), labelled as oxo-biodegradable or photodegradable plastics, (2) polylactic acid (PLA), and (3) polyvinyl alcohol (PVA)/starch blends. Most biodegradable plastics fail to completely degrade but remain visually present after six months of exposure. Only PLA is able to demonstrate 100 % disintegration in one to three months in marine settings, suggesting that subtropical marine environments may favor PLA degradation. Biodegradable plastics that are bio-based (PLA and PVA/Starch blends) show notably larger mass losses by 23–100 % than the fossil-based ones (modified-LDPE). Our results reveal higher degradation efficiencies of PLA and PVA/Cassava starch blend in marine than open-air settings (with mass losses larger by 50 %, and by 39–41 %, respectively), potentially via biodegradation and hydrolysis. Meanwhile, modified-LDPE and PVA/Corn starch blends in general show higher degradation efficiencies in open-air than marine settings (with mass losses larger by 2 %, and by 17–33 %, respectively), potentially via abiotic oxidation. Since all tested biodegradable plastics exhibit potential fragmentation signs, further investigation is needed to characterize the behaviours of the microplastics generated. The current labelling on biodegradable bags fails to provide comprehensive information regarding their actual environmental degradation behaviours, especially considering their fragmentation risk and limited degradation exhibited in this study. This highlights the imperative for improved messaging to ensure consumers are better informed about these products.

UPLC/ESI/MS profiling of red algae Galaxaura rugosa extracts and its activity against malaria mosquito vector, Anopheles pharoensis, with reference to Danio rerio and Daphnia magna as bioindicators

BackgroundAnopheles pharoensis has a major role in transmitting several human diseases, especially malaria, in Egypt?. Controlling Anopheles is considered as an effective strategy to eliminate the spread of malaria worldwide. Galaxaura rugosa is a species of red algae found in tropical to subtropical marine environments. The presence of G. rugosa is indicative of the ecosystem's overall health. The current work aims to investigate UPLC/ESI/MS profile of G. rugosa methanol and petroleum ether extracts and its activity against An. pharoensis and non-target organisms, Danio rerio and Daphnia magna.MethodsGalaxaura rugosa specimens have been identified using DNA barcoding for the COI gene and verified as G. rugosa. The UPLC/ESI/MS profiling of G. rugosa collected from Egypt was described. The larvicidal and repellent activities of G. rugosa methanol and petroleum ether extracts against An. pharoensis were evaluated, as well as the toxicity of tested extracts on non-target organisms, Dan. rerio and Dap. magna.ResultsThe UPLC/ESI/MS analysis of methanol and petroleum ether extracts led to the tentative identification of 57 compounds belonging to different phytochemical classes, including flavonoids, tannins, phenolic acids, phenyl propanoids. Larval mortality was recorded at 93.33% and 90.67% at 80 and 35 ppm of methanol and petroleum ether extracts, respectively, while pupal mortality recorded 44.44 and 22.48% at 35 and 30 ppm, respectively. Larval duration was recorded at 5.31 and 5.64 days by methanol and petroleum ether extracts at 80 and 35 ppm, respectively. A decrease in acetylcholinesterase (AChE) level and a promotion in Glutathione-S-transferase (GST) level of An. pharoensis 3rd instar larvae were recorded by tested extracts. The petroleum ether extract was more effective against An. pharoensis starved females than methanol extract. Also, tested extracts recorded LC50 of 1988.8, 1365.1, and 11.65, 14.36 µg/mL against Dan. rerio, and Dap. magna, respectively.ConclusionsUsing red algae derivatives in An. pharoensis control could reduce costs and environmental impact and be harmless to humans and other non-target organisms.

Insights into the diet and trophic ecology of white sharks (Carcharodon carcharias) gained through DNA metabarcoding analyses of cloacal swabs

AbstractThe white shark (Carcharodon carcharias) is one of the world's largest apex predators found throughout the world's temperate and subtropical marine environments. However, the species has suffered significant declines in recent decades and effective conservation programs require a sound knowledge of white shark biology and ecology. In particular, information on white shark diet across life stages and the species' range is needed to identify critical trophic interactions supporting shark populations and to predict the resilience of white sharks to environmental changes. In this study, we reassess the diet and trophic ecology of white sharks via the genetic analyses of cloacal swabs from 214 juvenile and subadult sharks from eastern Australia. Our findings are largely consistent with those of previous studies based on visual analyses of gut contents but highlight the unprecedented taxonomic resolution of prey items offered by genomic assessments of shark cloacal swabs. Diets consisted primarily of ray‐finned fishes, with Mugiliformes, Carangiformes, Perciformes, and Scombriformes being dominant prey taxa, but with elasmobranchs, marine mammals, and birds also being common dietary constituents. Statistical analyses revealed a significant effect of sex and sampling location on diet composition, indicating biological and spatial variability in diets and predatory behavior. Overall, these findings support the notion that juvenile and subadult white sharks are opportunistic predators, which may provide some level of resilience to shifts in marine resources. However, frequently consumed ray‐finned fishes, many of which are commercially targeted, may be key to supporting white shark populations in eastern Australia. This study represents the most comprehensive analysis of juvenile and subadult white shark diets performed to date and provides added confidence in the genomic analysis of cloacal swabs for dietary assessments of predatory species. These results are expected to help inform management geared toward conserving this important marine predator across the world's oceans.

Bioaccumulation and biomagnification of emerging poly- and perfluoroalkyl substances in marine organisms

Accumulating evidence has demonstrated the wide environmental presence of 6:2 chlorinated polyfluoroalkyl ether sulfonates (6:2 Cl-PFAES) and p-perfluorous nonenoxybenzene sulfonate (PFNOBS). However, data on the bioaccumulation and trophic magnification of these emerging poly- and perfluoroalkyl substances (PFASs) in subtropical marine environment is still limited. In this study, seawater (n = 17), sediment (n = 14), and marine organism (27 species; n = 177) samples were collected from East China Sea, and analyzed them for legacy and emerging PFASs. Besides perfluoroalkyl carboxylates and perfluorooctane sulfonate (PFOS), 6:2 Cl-PFAES was always among the predominant PFASs detected in seawater, sediment, and marine organism. For emerging PFASs, 6:2 Cl-PFAES (mean ± SD, 3.1 ± 0.17), 8:2 Cl-PFAES (3.3 ± 0.35), and PFNOBS (3.3 ± 0.19) had lower bioaccumulation factors (BAF) than PFOS (3.4 ± 0.22) in marine fish. In crab, PFNOBS (3.7 ± 0.33) had a lower biota-sediment accumulation factor (BSAF) than PFOS (3.9 ± 0.45). In snail, among all detected PFASs, PFNOBS (4.0 ± 0.42) had the highest mean log BSAF value. 8:2 Cl-PFAES consistently had a higher log BSAF value than 6:2 Cl-PFAES in snail and crab. Notably, these differences in BAF and BSAF are not significant. Among PFASs, 6:2 Cl-PFAES (2.3; 95 % confidence interval, CI: 1.9–2.6) displayed the highest trophic magnification factor (TMF). PFNOBS had the lowest TMF value (1.8, 95 % CI: 1.4–2.1), but which still indicates its weak biomagnification through the current marine food web. This is the first study reporting the bioaccumulation and biomagnification of PFNOBS in marine organisms, which deepens the understanding of its environmental behavior in the marine ecosystem.

Biofouling initial succession on offshore artificial substrate under subtropical conditions

This study presents the initial stages of the macrofouling community on artificial substrate exposed to the offshore subtropical marine environment, and the contribution of depth (3 and 22m), exposure time (1-2-4-7-10-13-weeks), UV-radiation, rainfall, temperature, pH, salinity, water chlorophyll-a, and zooplankton supply to organism establishment. Steel substrates were placed horizontally on the structure of a pipeline monobuoy off the southern shore of Brazil (Tramandaí beach), and the ecological succession was monitored by six random removals per depth during the summer-autumn of 2011. Approximately 88.5% of the quantified settled individuals comprised fouling fauna and 11.5% vagile and sedentary fauna, although the taxa richness was higher for non-sessile invertebrates. Species richness and organism density up to four weeks were significantly higher at 3m-depth. After this period, a higher density of organisms was found at 22m, while during the whole study the species richness and diversity remained higher at 3m-depth. Zooplankton composition did not show a simultaneous temporal relationship with invertebrate recruitment at any depth; however, increasing the exposure time, the similarity between the planktonic and benthic communities also increased. Meroplankton, tychoplankton, and holoplankton were recorded on the substrates. This study showed that the depth of available substrates affects the macrofouling establishment, which is mainly associated with UV-radiation, exposure time, and ecological interspecific interactions.

Paleobiology and paleobiogeography of sclerorhynchid sawfishes (Chondrichthyes, Batomorphii)

Sclerorhynchid sawfishes are a monophyletic group of Cretaceous selachians. They resemble modern sawfishes in the outer morphology and by having a hypertrophic rostral cartilage armed with lateral rows of spines. Generally, sclerorhynchid sawfishes were inhabitants of warm, shallow tropical and subtropical marine environments. Teeth of the oldest sclerorhynchid sawfishes from Spain are presented. They belong to Onchopristis Stromer and come from the lower Barrernian of eastern Spain. The paleobiology and paleogeographic pattern of sclerorhynchid sawfishes is reviewed and discussed.

Occurrence, source apportionment and risk assessment of antibiotics in water and sediment from the subtropical Beibu Gulf, South China

The widespread use of antibiotics has raised global concerns, but scarce information on antibiotics in the subtropical marine environment is available. In the present study, seawater and sediment samples were collected to investigate the occurrence, spatial distribution, source, and ecological risks of 22 antibiotics in the Beibu Gulf. The total concentrations of target antibiotics (∑antibiotics) were in the range of 1.74 ng/L to 23.83 ng/L for seawater and 1.33 ng/g to 8.55 ng/g dry weight (dw) for sediment. Spatially, a decreasing trend of antibiotic levels from coast to offshore area was observed, with relatively high levels at the sites close to the Qinzhou Bay and Qiongzhou Strait. Sulfamethoxazole (SMX), trimethoprim (TMP), and norfloxacin (NOX) were predominant in seawater, while NOX, enoxacin (ENX), and enrofloxacin (ENR) were the most abundant antibiotics in sediment. In general, the sediment-water partitioning coefficients (Kd) were positively correlated with log molecular weight (MW). Salinity, particle size, and pH of water were predicted to be vital factors influencing the partition of sulfadiazine (SDZ), CIX, and ENR (p < 0.05). Livestock and aquaculture were identified as dominant sources of antibiotics in the Beibu Gulf based on PCA-MLR and Unmix model. Risk assessment revealed that SMX, CIX could pose medium risks to algae in the Beibu Gulf. Overall, our results provided paramount insights into understanding the fate and transport behaviors of antibiotics in the subtropical marine environment.

Reef manta rays forage on tidally driven, high density zooplankton patches in Hanifaru Bay, Maldives.

Manta rays forage for zooplankton in tropical and subtropical marine environments, which are generally nutrient-poor. Feeding often occurs at predictable locations where these large, mobile cartilaginous fishes congregate to exploit ephemeral productivity hotspots. Investigating the zooplankton dynamics that lead to such feeding aggregations remains a key question for understanding their movement ecology. The aim of this study is to investigate the feeding environment at the largest known aggregation for reef manta rays Mobula alfredi in the world. We sampled zooplankton throughout the tidal cycle, and recorded M. alfredi activity and behaviour, alongside environmental variables at Hanifaru Bay, Maldives. We constructed generalised linear models to investigate possible relationships between zooplankton dynamics, environmental parameters, and how they influenced M. alfredi abundance, behaviour, and foraging strategies. Zooplankton biomass changed rapidly throughout the tidal cycle, and M. alfredi feeding events were significantly related to high zooplankton biomass. Mobula alfredi switched from non-feeding to feeding behaviour at a prey density threshold of 53.7 mg dry mass m−3; more than double the calculated density estimates needed to theoretically meet their metabolic requirements. The highest numbers of M. alfredi observed in Hanifaru Bay corresponded to when they were engaged in feeding behaviour. The community composition of zooplankton was different when M. alfredi was feeding (dominated by copepods and crustaceans) compared to when present but not feeding (more gelatinous species present than in feeding samples). The dominant zooplankton species recorded was Undinula vulgaris. This is a large-bodied calanoid copepod species that blooms in oceanic waters, suggesting offshore influences at the site. Here, we have characterised aspects of the feeding environment for M. alfredi in Hanifaru Bay and identified some of the conditions that may result in large aggregations of this threatened planktivore, and this information can help inform management of this economically important marine protected area.

Distribution, partitioning behavior and potential source of legacy and alternative per- and polyfluoroalkyl substances (PFASs) in water and sediments from a subtropical Gulf, South China Sea

Legacy per- and polyfluoroalkyl acids (PFASs) have received global concern over the scientific and public community since this century. However, the information on alternative PFASs pollution in the marine environment, especially in the subtropical marine environment is extremely limited. This study investigated the occurrence, partitioning, potential sources, and ecological risks of PFASs, including perfluoroalkane sulfonic acids (PFSAs), perfluoroalkyl carboxylic acids (PFCAs), and alternative PFASs, in surface water and sediments from the subtropical Beibu Gulf, South China. Concentrations of total PFASs (∑PFASs) were in the range of 0.98–2.64 ng/L in water and 0.19–0.66 ng/g (dry weight, dw) in sediment, respectively. Perfluorooctanoic acid (PFOA) was the most abundant PFAS in water, while PFASs in sediment were dominated by perfluorooctanesulfonic acid (PFOS) and PFOA. Among investigated environmental parameters (total organic carbon (TOC), grain size, water pH, sediment pH, and salinity), TOC and salinity were the dominant factors influencing the sediment-water distribution coefficient (Kd) of PFOA, perfluorodecanoic acid (PFDA), and perfluorononanoic acid (PFNA). Log Kd and log soil organic carbon-water distribution coefficient (Koc) both increase with increasing carbon chain length of PFASs. Significantly positive correlations between PFOS and perfluorohexanoic acid (PFHxA) (p < 0.05), PFOA and perfluoro-1-butane-sulfonamide (FBSA) were observed, suggesting that these PFASs might have similar sources and transport routes. Preliminary environmental risk assessment showed that PFOA and PFOS would not pose risks to the marine aquatic environment. This is the first comprehensive survey of legacy and alternative PFASs in a subtropical area of the Beibu Gulf, which provides significant data and scientific basis to better understand the fate of PFASs and pollution control management.

The diversity and metabolic potential of the microbial functional gene associated with Porites pukoensis.

Coral reef ecosystems usually distribute in oligotrophic tropical and subtropical marine environments, but they possess great biodiversity and high productivity. It may attribute to its efficient internal nutrient cycle system. However, the knowledge of functional microbial community structure is still limited. In this study, both functional gene array (Geochip 5.0) and nifH Illumina sequencing were used to profile the overall functional genes and diazotrophic communities associated with coral Porites pukoensis. More than 7500 microbial functional genes were detected from archaea, bacteria, and fungi. Most of these genes are related to the transformation of carbon, nitrogen, sulfur, and phosphorus, providing evidence that microbes in the coral holobiont play important roles in the biogeochemical cycle of coral reef ecosystems. Our results indicated a high diversity of diazotrophs associated with corals. The dominant diazotrophic groups were related to phyla Alphaproteobacteria, Deltaproteobacteria, Cyanobacteria, and Gammaproteobacteria. And the dominant diazotrophic communities were divided into four clusters. They were affiliated with nifH sequences from genera Zymomonas, Halorhodospira, Leptolyngbya, Trichormus, and Desulfovibrio, indicating these groups may play a more important role in the nitrogen-fixing process in the coral holobiont. This study revealed functional gene diversity and suggested the roles they played in the biogeochemical cycling of the coral holobiont.

Upper Barremian-lower Aptian scleractinian corals of central Europe(Schrattenkalk Fm., Helvetic Zone, Austria, Germany, Switzerland).

From the Schrattenkalk Formation (upper Barremian-lower Aptian) of southern Germany, western Austria, and Switzerland, new coral material is taxonomically described, belonging to 56 species from 35 genera of 21 families: Actinastrea pseudominima (Koby); A. subornata (d'Orbigny); Paretallonia bendukidzeae Sikharulidze; Eugyra (Felixigyra) crassa (de Fromentel) (new combination); E. (F.) patruliusi (Morycowa); E. (F.) picteti (Koby) (new combination); E. rariseptata Morycowa; Myriophyllia propria Sikharulidze; Thecosmilia dichotoma Koby; Clausastrea plana (de Fromentel); Complexastrea cf. lobata Geyer; Paraclausastrea chevalieri Zlatarski; P. kaufmanni (Koby); P. vorarlbergensis Baron-Szabo; ?Montlivaltia sp.; Diplogyra subplanotabulata Sikharulidze; Hydnophora styriaca (Michelin); Dermosmilia fiagdonensis Starostina Krasnov; D. cf. laxata (Étallon); D. trichotoma Eguchi; D. tuapensis Baron-Szabo Gonzalez.-León; Placophyllia grata Bugrova; Cairnsipsammia merbeleri Baron-Szabo; Morphastrea ludovici (Michelin) (emended herein); Ahrdorffia ornata (Morycowa); Astraeofungia tirnovoriana (Toula) (new combination); Actinaraea (Camptodocis) brancai (Dietrich); A. tenuis Morycowa; Rhipidomeandra bugrovae Morycowa Masse; Comoseris aptiensis Baron-Szabo; Comoseris jireceki Toula; Polyphylloseris mammillata Eguchi; Ellipsocoenia barottei (de Fromentel) (new combination); Ellipsocoenia haimei (de Fromentel) (new combination); Dimorphastrea tenustriata de Fromentel; Latomeandra cf. plicata (Goldfuss); Microphyllia gemina Eliášová; Thalamocaeniopsis stricta (Milne Edwards Haime)(new combination); Trigerastraea haldonensis (Duncan) (new combination); Heliocoenia rozkowskae Morycowa; H. vadosa (Počta); Stylosmilia corallina Koby; Cyathophora decipiens ramosa (Hackemesser) (new combination); C. mirtschinkae Kuzmicheva; Cladophyllia clemencia de Fromentel; C. conybearei Milne Edwards Haime; C. crenata (Blanckenhorn); C. furcifera Roemer; C. rollieri (Koby); C. stutzi (Koby) (new combination); Amphiaulastrea conferta (Ogilvie); A. rarauensis (Morycowa); Heterocoenia inflexa (Eichwald); H. minima d'Orbigny; Acanthogyra aptiana Turnšek; as well as the new species Columnocoenia falkenbergensis. In addition, all the information about previously described taxa from the Schrattenkalk was evaluated with regard to their taxonomic assignment, stratigraphic and paleogeographic distribution, and paleoenvironmental relationships to faunas from other geographic areas and time periods. A total of 122 species belonging to 53 genera and 24 families are recognized from Schrattenkalk localities (western Austria, southern Germany, Switzerland). These include the taxa of both the Lower and Upper Schrattenkalk, and the intercalated Rawil Member. The Schrattenkalk coral fauna nearly exclusively consists of colonial forms of three general categories of polyp integration: cerioid-plocoid (33.6%); branching (18%); and (hydno-) meandroid-thamnasterioid (46.7%). Only two specimens were doubtfully assigned to solitary taxa. Corallite diameters range from less than 1 mm to over 20 mm and fall into three major corallite-size groups: small (up to 2.4 mm), medium (2.4-9.5 mm), and large (9.5 mm). The fauna is distinctly dominated by forms with medium-size corallites (68%), followed by forms having small-size corallites (26%). Together with the potential solitary taxa, corals with large-size corallites are of minimal importance to the total fauna. On the genus-level, the Schrattenkalk corals show closest affinities to coral assemblages of central (especially France; 55%), eastern and southern Europe (44‒49%), as well as Central America (47%). On the species-level, closest affinities are to coral assemblages of central, southeastern, and eastern Europe (16‒25.5%), as well as Central America (14%), but nearly a third of the Schrattenkalk species (30%) was restricted to the upper Barremian-lower Aptian of the Schrattenkalk Formation; this suggests that the Schrattenkalk platform sensu lato was a diversity center and a crucial reservoir for coral recruitment. The majority (86%) of the Schrattenkalk corals thrived in a shallow-water, reefal to perireefal, subtropical marine environment. In general, the Schrattenkalk coral assemblages are characteristic of moderate- to high-energy environments of the inner shelf to shore zone, having morphotype associations that typically prevail down to 10-15 m depth. In contrast, for the Upper Schrattenkalk coral fauna of central Switzerland (Hergiswil), a non-reefal paleoenvironment at a depth of several tens of meters is suggested by the morphotypes of the taxa and types of microfacies present. The corals of the Schrattenkalk Formation occurred in both photozoan (Lower and Upper Schrattenkalk members) and heterozoan (Rawil member) carbonate-producing communities. With regard to taxonomic diversity, the Schrattenkalk coral fauna is comparable to the most species-rich Upper Jurassic reef assemblages and represents the last major coral-reef development of the Mesozoic.

Bioactive natural products from the genus Salinospora: a review.

Actinomycetes are an important source for bioactive secondary metabolites. Among them, the genus Salinispora is one of the first salt obligatory marine species worldwide and is typically found in various types of substrates in tropical and subtropical marine environments including sediments and marine organisms. This genus produces a wide range of chemical scaffolds and bioactive compounds such as lomaiviticins, cyclomarins, rifamycins, salinaphthoquinones, and salinosporamides. This review arranged Salinispora derived secondary metabolites according to the three species that comprise the genus. Moreover, muta- and semi-synthesis analogs derived from salinosporamide were also described in this review.

New genus of homostiid arthrodire contributes to the revision of placoderm diversity in the Early Devonian of the Prague Basin

This study adds new data to complete the taxonomic revision of arthrodire placoderms from the Early Devonian of the Prague Basin (Czech Republic). It focuses on re-describing arthrodire specimens from the Emsian strata published more than a hundred years ago and associating them with unpublished material. The observations contradict previous taxonomic determinations of the Emsian arthrodires, which distinguished four species of three genera. Only one new genus and species is recovered—Johannaspis bohemicus (Barrande, 1872). The previous taxonomic splitting of the material into various genera is explained as a factor of specific taphonomical preservation in different localities of the Prague Basin. Another factor enabling the artificial splitting was the present location of the material in different institutions around the world. Together with Antineosteus rufus Vaškaninová & Kraft, 2014 based on previously unpublished specimens, they are the only two placoderm species known from the Emsian of the Prague Basin. Both are assigned to the homostiid arthrodires—large suspension feeders. The abundance of the Emsian placoderm fauna is very low in the Prague Basin; only a few specimens are known from each locality. However, they occur in a number of localities of Emsian age in the Prague Basin and in different environments, from very shallow (A. rufus) to relatively deeper marine environments, with all the occurrences being in limestones. The palaeogeographical distribution of homostiid arthrodires in the late Early Devonian was limited to tropical and subtropical shallow marine environments mainly in the southern hemisphere. In the Middle Devonian, the homostiids are no longer recorded from the northern continental margin of Gondwana including the Prague Basin area. However, they appear in Laurussia, Siberia and eastern Gondwana. The disappearance of environments with abundant food resources favourable for these large suspension feeders in the Prague Basin area could be related to the narrowing of the Rheic Ocean and gradual emerging of dry land as an early manifestation of the proceeding Variscan orogeny. This specific local palaeogeographical development of the Prague Basin area is considered the main reason for the significant decrease in diversity and abundance of placoderm fauna, which is in contradiction to the general trend.Valéria Vaškaninová [va.vaska@gmail.com], Institute of Geology and Palaeontology, Faculty of Science, Charles University, Albertov 6, Prague, 128 43, Czech Republic.

Isolation of Gram‐positiveFirmibacteriaas major eicosapentaenoic acid producers from subtropical marine sediments

In this study, a total of 172 putative omega-3 producers were isolated from 28 sediment samples from the Arabian Gulf employing a selective isolation procedure using marine agar containing 0·1% triphenyl tetrazolium chloride (TTC). Out of these 172 isolates, 19 isolates produced eicosapentaenoic acid (EPA) as confirmed by Gas Chromatography-Mass Spectrometry (GC-MS). The EPA content of the isolated bacterial strain varied from 1·76 to 6·52% of total fatty acids. Among the 19 isolates of EPA producers, while 17 isolates harboured both pfaA gene and Δ6 desaturase gene, only five isolates harboured Δ5 desaturase gene. Two of the EPA positive strains harbour none of the three genes tested. The 16s RNA identification of these isolates revealed that except one, all the EPA producers were Gram-positive marine bacteria belonging to the phylum Firmicutes, family Bacillacea, genera Bacillus and Oceanobacillus. Halomonas pacifica was the only Gram-negative Gamma-Proteobacteria detected to produce EPA from this region. SIGNIFICANCE AND IMPACT OF THE STUDY: Recently, marine bacteria are considered as a promising source of polyunsaturated fatty acid (PUFA) over marine fishes and microalgae. PUFA producers reported from polar and deep-sea sources were restricted to five well-known marine genera under two distinct domains of bacteria such as proteobacteria (Shewanella, Colwellia, and Moritella) and cytophaga group (Flexibacter, Psychroflexus). This study revealed that subtropical marine environment could also be the source of PUFA producing bacteria, and they predominantly belonged to the class of Firmibacteria. This finding opens up new avenue for research to study the inherent mechanism and physiology of such organisms from this unique environment.

Hardened faecal pellets as a significant component in deep water, subtropical marine environments

AbstractNon‐skeletal carbonate grains are classically interpreted to form in shallow, tropical environments. Peloids deposited in deep, subtropical marine conditions are poorly studied. IODP site U1460 on the subtropical Carnarvon Ramp (Southwest Shelf of Australia) recovered a nearly continuous Pliocene to Recent record of outer shelf and slope sediments. The relative abundance of peloids varies between 0% and 67% of the fine to medium sand fraction, and contributes on average ~4% of all grains. The origin and composition of these peloids were investigated using scanning electron microscopy equipped with an energy‐dispersive X‐ray spectrometer, light microscopy, X‐ray diffraction and stable isotope analysis. The peloids have a uniform size and shape and are interpreted as faecal pellets. They are mainly composed of skeletal fragments such as ascidian spicules, planktic foraminifera and sponge spicules in a mud‐sized matrix containing abundant coccolith plates. Mineralogical analysis show that the pellets consist of aragonite, calcite and dolomite. The pellets have an identical mineralogical composition and skeletal assemblage as the surrounding matrix, indicating that they have formed in situ. They occur more abundantly during interglacials when the site was situated in deeper waters below the swell wave base, presumably because the pellets were protected from disintegration and therefore available for cementation. The presence of framboidal pyrite within the pellets indicates bacterial sulphate reduction (BSR). The reduction of iron by hydrogen sulphide produced during BSR decreases the pH and likely explains the observed aragonite dissolution. Aragonite dissolution likely increases the alkalinity, and in consequence causes the precipitation of calcite and dolomite cements. It is suggested here that pellets are hardened due to this early cementation close to the sea floor increasing the potential for preservation in the fossil record.

Copepod species abundance from the Southern Ocean and other regions (1980–2005) – a legacy

Abstract. This data collection originates from the efforts of Sigrid Schnack-Schiel (1946–2016), a zooplankton ecologist with great expertise in life cycle strategies of Antarctic calanoid copepods, who also investigated zooplankton communities in tropical and subtropical marine environments. Here, we present 33 data sets with abundances of planktonic copepods from 20 expeditions to the Southern Ocean (Weddell Sea, Scotia Sea, Amundsen Sea, Bellingshausen Sea, Antarctic Peninsula), one expedition to the Magellan region, one latitudinal transect in the eastern Atlantic Ocean, one expedition to the Great Meteor Bank, and one expedition to the northern Red Sea and Gulf of Aqaba as part of her scientific legacy. A total of 349 stations from 1980 to 2005 were archived. During most expeditions depth-stratified samples were taken with a Hydrobios multinet with five or nine nets, thus allowing inter-comparability between the different expeditions. A Nansen or a Bongo net was deployed only during four cruises. Maximum sampling depth varied greatly among stations due to different bottom depths. However, during 11 cruises to the Southern Ocean the maximum sampling depth was restricted to 1000 m, even at locations with greater bottom depths. In the eastern Atlantic Ocean (PS63) sampling depth was restricted to the upper 300 m. All data are now freely available at PANGAEA via the persistent identifier https://doi.org/10.1594/PANGAEA.884619.Abundance and distribution data for 284 calanoid copepod species and 28 taxa of other copepod orders are provided. For selected species the abundance distribution at all stations was explored, revealing for example that species within a genus may have contrasting distribution patterns (Ctenocalanus, Stephos). In combination with the corresponding metadata (sampling data and time, latitude, longitude, bottom depth, sampling depth interval) the analysis of the data sets may add to a better understanding how the environment (currents, temperature, depths, season) interacts with copepod abundance, distribution and diversity. For each calanoid copepod species, females, males and copepodites were counted separately, providing a unique resource for biodiversity and modelling studies. For selected species the five copepodite stages were also counted separately, thus also allowing the data to be used to study life cycle strategies of abundant or key species.

Trophic and growth baseline of dominant subtidal gastropods in contrasting subtropical marine environments

Using 13C/12C, 15N/14N and 18O/16O isotopes, the trophic relationship and growth estimation were analyzed in gastropods Nassarius siquijorensis, Murex trapa and Turritella bacillum and their potential food sources and predators in summer and winter from estuarine and oceanic environments in subtropical Hong Kong. Results of δ13C and δ15N values and isotopic mixing model revealed N. siquijorensis and M. trapa were one trophic level higher than T. bacillum, in which its main food source was particulate organic matter (POM) whereas N. siquijorensis largely consumed POM and polychaetes and M. trapa also preyed on other gastropods. Crabs were the major predator of gastropods. Organisms collected from oceanic waters were more 13C enriched than from estuarine waters, reflecting different carbon food sources from marine or terrestrial origin. The δ18O profile from shell carbonate suggested these gastropods were one to two years old. T. bacillum exhibited faster summer growth than the other two species.

Differential decomposition of bacterial and viral fecal indicators in common human pollution types

Understanding the decomposition of microorganisms associated with different human fecal pollution types is necessary for proper implementation of many water quality management practices, as well as predicting associated public health risks. Here, the decomposition of select cultivated and molecular indicators of fecal pollution originating from fresh human feces, septage, and primary effluent sewage in a subtropical marine environment was assessed over a six day period with an emphasis on the influence of ambient sunlight and indigenous microbiota. Ambient water mixed with each fecal pollution type was placed in dialysis bags and incubated in situ in a submersible aquatic mesocosm. Genetic and cultivated fecal indicators including fecal indicator bacteria (enterococci, E. coli, and Bacteroidales), coliphage (somatic and F+), Bacteroides fragilis phage (GB-124), and human-associated genetic indicators (HF183/BacR287 and HumM2) were measured in each sample. Simple linear regression assessing treatment trends in each pollution type over time showed significant decay (p ≤ 0.05) in most treatments for feces and sewage (27/28 and 32/40, respectively), compared to septage (6/26). A two-way analysis of variance of log10 reduction values for sewage and feces experiments indicated that treatments differentially impact survival of cultivated bacteria, cultivated phage, and genetic indicators. Findings suggest that sunlight is critical for phage decay, and indigenous microbiota play a lesser role. For bacterial cultivated and genetic indicators, the influence of indigenous microbiota varied by pollution type. This study offers new insights on the decomposition of common human fecal pollution types in a subtropical marine environment with important implications for water quality management applications.

Characterization of alcohol producing yeast isolated from fermented fruit juice of Sonneratia caseolaris

Twenty yeast strains were isolated from fermented fruit juice of Sonneratia caseolaris. Among them, strain NM2 was chosen for further study as a potential alcohol producer. The results of molecular analysis method show that yeast strain NM2 belongs to C. tropicalis, which is widely distributed in the tropical and subtropical marine environment. The optimum temperature and the initial pH value for alcohol fermentation of strain C. tropicalis NM2 were 30oC and 3.5, respectively. Under these conditions, after 14 days of fermentation of fruit juice of Sonneratia caseolaris, maximum alcohol level of 14.9% (v/v) was obtained by strain C. tropicalis NM2. With the potential of high alcohol production, the yeast strain C. tropicalis NM2 can be applied for industrial alcohol or bioethanol production.