Subtropical Biomes Research Articles

Thymus algeriensis Boiss. et Reut., a north African endemic plant species: genetic diversity and population structure as assessed by molecular markers, a pioneer step for conservation implications.

Thymus algeriensis Boiss. et Reut. is one of the most widespread North African species of the genus Thymus L. The species is subshrub growing primarily in subtropical biome of Morocco, Algeria, Tunisia and Libya. In Tunisia, the plant species is under high pressure of anthropogenic activities including over-collecting. The assessment of genetic diversity and population structure of T. algeriensis is a pioneer step to retrace its evolutionary history and to perform appropriate conservation strategies of the plant species. Seven wild populations growing, widely, in different bioclimatic zones were selected and analysed using two molecular markers systems. Fifteen Simple Sequence Repeats (SSRs) and fifteen Inter-Simple Sequence Repeats (ISSRs) were used to characterize genetically 140 different genotypes. The results showed a high molecular variation within populations and among the studied genotypes. The intra-populations genetic diversity revealed by SSRs was higher (P = 80.95%, Na = 2.143 and He = 0.364) than that based on ISSRs (P = 78.12%, Na = 1.632, He = 0.265 and I = 0.398). As demonstrated by inbreeding coefficients, a significant level of differentiation and a low level of gene flow were detected among studied populations (FST = 0.161 for SSRs and ΦST = 0.197 for ISSRs). Furthermore, the results of ISSRs marker suggest land strips as barriers in population genetic structure. While SSRs marker reflects a relatively structured bioclimatic patterns of studied populations. The Bayesian analysis showed a specific adaptation of populations to local environments. The used molecular markers (ISSRs and SSRs) seem to be effective in deciphering genetic polymorphism of Tunisian genotypes of T. algeriensis. Therefore, the genetic structure of the studied genotypes could constitute a starting point for further conservation, characterization and breeding programs.

Determination of the volatile chemical profile of Momordica charantia (bitter melon) leaf and fruit by GC-MS

The plant Momordica charantia (Cucurbitaceae), popularly known as bitter melon, snake fruit, Saint Vincent’s herb, or little melon, is an African species that has developed in tropical and subtropical biomes in various parts of Brazil. The fruit is used in various traditional medicinal applications. The study aimed to identify the compounds of the essential oil of the leaves obtained by hydrodistillation and in the fruit through Solid-Phase Microextraction by headspace mode (HS-SPME) coupled to gas chromatography-mass spectrometry (GC-MS). The analysis of mature fruits led to the identification of 18 compounds, compared to the hydrodistillation, in which 21 compounds were identified. Benzaldehyde, linalool, and β-cyclocitral were identified in both methods. Linalool was the major compound in both processes. These findings highlight the importance of knowing the chemical composition of organic volatile compounds (VOCs), given the potential for medicinal applications and popular use of plants.

Colletotrichum nanjingense sp. nov. and C. gloeosporioides s.s. Causing Leaf Tip Blight on Jasminum mesnyi in Nanjing, Jiangsu, China.

Jasminum mesnyi Hance is an important medicinal and ornamental plant. This species is native to South Central China and Vietnam and grows primarily in the subtropical biomes. In June 2022, 17 Colletotrichum strains were isolated from leaf tip blight on foliage of J. mesnyi in Nanjing, Jiangsu, China. Based on morphological characteristics and multilocus phylogenetic analyses of six genomic loci (ITS, CAL, ACT, TUB2, CHS-1, and GAPDH), a new species, namely, C. nanjingense, and a known species, namely, C. gloeosporioides s.s., were described and reported. Pathogenicity tests revealed that both species were pathogens causing leaf tip blight on J. mesnyi. The results provided necessary information for disease control and enhanced our understanding of the diversity of Colletotrichum species in China.

Wetland soil microbial responses to upland agricultural intensification and snail invasion

Wetland soils harbor diverse microorganisms including bacteria, archaea, and fungi, all of which play significant roles in maintaining soil health and ecosystem functions but are susceptible to influences from multiple environmental changes. Agricultural intensification and biological invasion are two fundamental drivers of environmental change for wetlands, but their interactive effects on soil microbial communities remain less well understood, particularly for seasonal subtropical wetlands. Yet such understanding is vital for wetland conservation and management. In this study, we conducted a 14-week field mesocosm experiment to investigate how agricultural intensification and invasive apple snail (Pomacea maculata) – an emerging and increasingly concerning threat to natural and agricultural systems in southeastern U.S. – altered wetland soil microbial communities and structures. We found that invasive P. maculata showed selective effects on relative abundance of specific microbial taxa (e.g., Proteobacteria, Nitrospirota), and interactive effects with upland intensification on Spirochaetota and Mortierellomycota. Upland agricultural intensification also exerted significant and consistent effects on microbial composition and diversity across microbial domains. Changes in microbial composition were partly manifested through modifications in water chemistry, such as dissolved oxygen, which acted as environmental regulators. In addition, upland intensification led to more complex but sparsely connected microbial networks, while invasive snail presence decreased network complexity and resulted in greater modularity, less edge density, and longer path length, indicative of lower molecular information exchange efficiency. Our research emphasizes the need for a comprehensive evaluation of microbial responses (i.e., composition, diversity, and co-occurrence patterns) to better understand multi-stressor impacts from human activities on wetland belowground microbial communities. By holistically characterizing microbial responses, our findings show how global change drivers may impact wetland microorganisms in subtropical biomes and infer their functional consequences. Our results have important implications for sustainable landscape management and conservation of wetlands that are experiencing escalating human-induced environmental changes.

Seasonal Variability of the Surface Ocean Carbon Cycle: A Synthesis

AbstractThe seasonal cycle is the dominant mode of variability in the air‐sea CO2 flux in most regions of the global ocean, yet discrepancies between different seasonality estimates are rather large. As part of the Regional Carbon Cycle Assessment and Processes Phase 2 project (RECCAP2), we synthesize surface ocean pCO2 and air‐sea CO2 flux seasonality from models and observation‐based estimates, focusing on both a present‐day climatology and decadal changes between the 1980s and 2010s. Four main findings emerge: First, global ocean biogeochemistry models (GOBMs) and observation‐based estimates (pCO2 products) of surface pCO2 seasonality disagree in amplitude and phase, primarily due to discrepancies in the seasonal variability in surface DIC. Second, the seasonal cycle in pCO2 has increased in amplitude over the last three decades in both pCO2 products and GOBMs. Third, decadal increases in pCO2 seasonal cycle amplitudes in subtropical biomes for both pCO2 products and GOBMs are driven by increasing DIC concentrations stemming from the uptake of anthropogenic CO2 (Cant). In subpolar and Southern Ocean biomes, however, the seasonality change for GOBMs is dominated by Cant invasion, whereas for pCO2 products an indeterminate combination of Cant invasion and climate change modulates the changes. Fourth, biome‐aggregated decadal changes in the amplitude of pCO2 seasonal variability are largely detectable against both mapping uncertainty (reducible) and natural variability uncertainty (irreducible), but not at the gridpoint scale over much of the northern subpolar oceans and over the Southern Ocean, underscoring the importance of sustained high‐quality seasonally resolved measurements over these regions.

Proof of evidence of changes in global terrestrial biomes using historic and recent NDVI time series

Climate change affects plant dynamics and functioning of terrestrial ecosystems. This study aims to investigate temporal changes in global vegetation coverage and biomes during the past three decades. We compared historic annual NDVI time series (1982, 1983, 1984 and 1985) with recent ones (2015, 2016, 2017 and 2018), captured from NOAA-AVHRR satellite observations. To correct the NDVI time series for missing data and outliers, we applied the Harmonic Analysis of Time Series (HANTS) algorithm. The NDVI time series were decomposed in their significant amplitude and phase given their periodic fluctuation, except for ever green vegetation. Our findings show that the average NDVI values in most biomes have increased significantly (F-value<0.01) by 0.05 ndvi units over during the past three decades, except in tundra, and deserts and xeric shrublands. The highest rates of change in the harmonic components were observed in the northern hemisphere, mainly above 30° latitude. Worldwide, the mean annual phase reduced by 9° corresponding to a 9 days shift in the beginning of the growing season. Annual phases in the recent time series reduced significantly as compared to the historic time series in the five major global biomes: by 14.1, 14.8, 10.6, 9.5, and 22.8 days in boreal forests/taiga; Mediterranean forests, woodlands, and scrubs; temperate conifer forests; temperate grasslands, savannas, and shrublands; and deserts, and xeric shrublands, respectively. In tropical and subtropical biomes, however, changes in the annual phase of vegetation coverage were not statistically significant. The decrease in the level of phases and acceleration of growth and changes in plant phenology indicate the increase in temperature and climate changes of the planet.

Historical spatiotemporal changes in fire danger potential across biomes

This study 1) identifies the seasons and biomes that exhibit significant (1980–2019) changes in fire danger potential, as quantified by the Canadian Fire Weather Index (FWI); 2) explores what types of fire behavior potentials may be contributing to changes in fire danger potential, as quantified by the United States Energy Release Component (ERC) and the Ignition Component (IC); 3) provides spatiotemporal insight on how fire danger potential and fire behavior potential are responding in relation to changes in seasonal precipitation totals and seasonal mean air temperature across biomes. Time series of these fire potentials, as well as seasonal mean temperature, and seasonal precipitation totals are generated using data from the 0.25° ECMWF spatial resolution Reanalysis 5th Generation (ERA5) and the Climatic Research Unit gridded Time Series (CRU TS). The Mann-Kendall test is then applied to identify significant spatiotemporal trends across each biome. Results indicate that the September–November season (SON) exhibits the greatest rate of increase in fire danger potential, followed by the June–August season (JJA), December, January–February season (DJF), and March–May season (MAM), and this is predominant over the Tropical and Subtropical Moist Broadleaf Forest Biome, as well as all vegetation types of the temperate biomes. Similarly, the temperate biomes experience the greatest rate of increase in fire intensity potential and ignition potential, but prevalent during the DJF and MAM seasons. Furthermore, there is a significant positive correlation between fire danger potential and seasonal mean air temperature during JJA in the Northern Hemisphere for the temperate biomes in North America and Europe, as well as the Tropical and Subtropical biomes in Africa. Our analysis provides quantitative insight as to how fire danger potential and fire behavior potential have been responding to changes in seasonal mean temperature and seasonal precipitation totals across different ecoregions around the world.

A chronologically reliable record of 17,000 years of biomass burning in the Lake Victoria area

Fire regimes differ across tropical and subtropical biomes depending on multiple parameters whose interactions and levels of importance are poorly understood, particularly at multidecadal and longer time scales. In the catchment of Lake Victoria, savanna, rainforest, and Afromontane vegetation have interspersed over the last 17,000 years, which may have influenced the fire regime and vice versa. However, climate and humans are most often the primary drivers of fire regime changes, and analysing their respective roles is critical for understanding current and future fire regimes. Besides a handful of radiocarbon dates on grassy charcoal, the timescales of published studies of Lake Victoria sediment chronologies rely mostly on dates of bulk sediment, and chronological disagreements persist, mainly due to variation between estimations of the 14C reservoir effect. Here, we provide independent 14C chronologies for three Late Glacial and Holocene lacustrine sediment cores from various water depths and compare them with the biostratigraphy to establish a new chronological framework. We present the first continuous sedimentary charcoal records from Lake Victoria; these suggest that fire activity varied substantially during the past 17,000 years. Our new pollen records reveal the long-term vegetation dynamics. The available evidence suggests that before human impact increased during the Iron Age (ca. 2400 yr BP), biomass burning was linked to climate and vegetation reorganizations, such as warming, drying, and the expansion of rainforests and savannas. Our results imply that climate can trigger substantial fire regime changes and that vegetation responses to climate change can co-determine the fire regime. For instance, biomass burning decreased significantly when the rainforest expanded in response to increasing temperatures and moisture availability. Such insights into the long-term linkages between climate, vegetation, and the fire regime may help to refine ecosystem management and conservation strategies in a changing global climate.

Regionally Variable Contribution of Dissolved Organic Phosphorus to Marine Annual Net Community Production

AbstractMarine dissolved organic phosphorus (DOP) serves as an organic nutrient to marine autotrophs, sustaining a portion of annual net community production (ANCP). Numerical models of ocean circulation and biogeochemistry have diagnosed the magnitude of this process at regional to global scales but have thus far been validated against DOP observations concentrated within the Atlantic basin. Here we assimilate a new marine DOP data set with global coverage to optimize an inverse model of the ocean phosphorus cycle to investigate the regionally variable role of marine DOP utilization by autotrophs contributing to ANCP. We find ∼25% of ANCP accumulates as DOP with a regionally variable pattern ranging from 8% to 50% across nine biomes investigated. Estimated mean surface ocean DOP lifetimes of ∼0.5–2 years allow for transport of DOP from regions of net production to net consumption in subtropical gyres. Globally, DOP utilization by autotrophs sustains ∼14% (0.9 Pg C yr−1) of ANCP with regional contributions as large as ∼75% within the oligotrophic North Atlantic and North Pacific. Shallow export and remineralization of DOP within the ocean subtropics contributes ∼30%–80% of phosphate regeneration within the upper thermocline (&lt;300 m). These shallow isopycnals beneath the subtropical gyres harboring the preponderance of remineralized DOP outcrop near the poleward edge of each gyre, which when combined with subsequent lateral transport equatorward by Ekman convergence, provide a shallow overturning loop retaining phosphorus within the subtropical biome, likely helping to sustain gyre ANCP over multiannual to decadal timescales.

Biogeographic responses and niche occupancy of microbial communities following long-term land-use change.

Understanding the effects of forest-to-agriculture conversion on microbial diversity has been a major goal in soil ecological studies. However, linking community assembly to the ruling ecological processes at local and regional scales remains challenging. Here, we evaluated bacterial community assembly patterns and the ecological processes governing niche specialization in a gradient of geography, seasonality, and land-use change, totaling 324 soil samples, 43 habitat characteristics (abiotic factors), and 16 metabolic and co-occurrence patterns (biotic factors), in the Brazilian Atlantic Rainforest, a subtropical biome recognized as one the world's largest and most threatened hotspots of biodiversity. Pairwise beta diversities were lower in pastures than in forest and no-till soils. Pasture communities showed a predominantly neutral model, regarding stochastic processes, with moderate dispersion, leading to biotic homogenization. Most no-till and forest microbial communities followed a niche-based model, with low rates of dispersal and weak homogenizing selection, indicating niche specialization or variable selection. Historical and evolutionary contingencies, as represented by soil type, season, and dispersal limitation were the main drivers of microbial assembly and processes at the local scale, markedly correlated with the occurrence of endemic microbes. Our results indicate that the patterns of assembly and their governing processes are dependent on the niche occupancy of the taxa evaluated (generalists or specialists). They are also more correlated with historical and evolutionary contingencies and the interactions among taxa (i.e., co-occurrence patterns) than the land-use change itself.

Phytolith Assemblages as a Promising Tool for Quantitative Canopy Coverage Reconstruction in Subtropical Forests, China.

This study investigates the reliability of phytolith assemblage analysis for characterizing subtropical vegetation and explores the potential for using these modern phytolith–vegetation relationships for paleoenvironmental interpretation in southeastern China. The samples were collected from five common subtropical vegetation communities in the Daiyun Mountains, southeastern China, with the above-ground vegetation recorded at each plot. Constrained ordination analysis was used to determine the most important factor governing the variations in phytolith assemblages that could be quantitatively reconstructed with weighted averaging partial least squares regression (WAPLS). The relationship between modern phytolith assemblages and the parent vegetation, as well as production, dispersal, and taphonomic processes, was discussed. Results demonstrated that the main subtropical biomes in southeastern China could be well distinguished by soil phytolith assemblages. In particular, the overall amount of tree coverage was well represented by topsoil phytolith assemblages. Grass silica short cell phytoliths (GSSCP) tended to occur in higher proportions in open habitats (shrub-meadow) at higher elevations, whereas non-grass phytolith morphotypes attained higher frequencies under mixed and broadleaf forests at lower elevations. Human-induced deforestation might increase the frequency of GSSCP within the bulk phytolith assemblage. Our results constitute the primary phytolith reference data for the subtropical zone in southeastern Asia where vegetation change during the Holocene period, particularly forest shifts, anthropogenic deforestation, and early agriculture are poorly documented.

Ecological Drivers of the Soil Microbial Diversity and Composition in Primary Old-Growth Forest and Secondary Woodland in a Subtropical Evergreen Broad-Leaved Forest Biome in the Ailao Mountains, China.

Replacement of primary old-growth forests by secondary woodlands in threatened subtropical biomes drives important changes at the level of the overstory, understory and forest floor, but the impact on belowground microbial biodiversity is yet poorly documented. In the present study, we surveyed by metabarcoding sequencing, the diversity and composition of soil bacteria and fungi in the old-growth forest, dominated by stone oaks (Lithocarpus spp.) and in the secondary Yunnan pine woodland of an iconic site for biodiversity research, the Ailaoshan National Nature Reserve (Ailao Mountains, Yunnan province, China). We assessed the effect of forest replacement and other environmental factors, including soil horizons, soil physicochemical characteristics and seasonality (monsoon vs. dry seasons). We showed that tree composition and variation in soil properties were major drivers for both bacterial and fungal communities, with a significant influence from seasonality. Ectomycorrhizal Operational Taxonomic Units (OTUs) dominated the functional fungal guilds. Species richness and diversity of the bacterial and fungal communities were higher in the pine woodland compared to the primary Lithocarpus forest, although prominent OTUs were different. The slightly lower complexity of the microbiome in the primary forest stands likely resulted from environmental filtering under relatively stable conditions over centuries, when compared to the secondary pine woodlands. In the old-growth forest, we found a higher number of species, but that communities were homogeneously distributed, whereas in the pine woodlands, there is a slightly lower number of species present but the communities are heterogeneously distributed. The present surveys of the bacterial and fungal diversity will serve as references in future studies aiming to assess the impact of the climate change on soil microbial diversity in both old-growth forests and secondary woodlands in Ailaoshan.

When tropical and subtropical congeners met: Multiple ancient hybridization events within Eriobotrya in the Yunnan-Guizhou Plateau, a tropical-subtropical transition area in China.

Global climate changes during the Miocene may have created ample opportunities for hybridization between members of tropical and subtropical biomes at the boundary between these zones. Yet, very few studies have explored this possibility. The Yunnan-Guizhou Plateau (YGP) in Southwest China is a biodiversity hotspot for vascular plants, located in a transitional area between the floristic regions of tropical Southeast Asia and subtropical East Asia. The genus Eriobotrya (Rosaceae) comprises both tropical and subtropical taxa, with 12 species recorded in the YGP, making it a suitable basis for testing the hypothesis of between-biome hybridization. Therefore, we surveyed the evolutionary history of Eriobotrya by examining three chloroplast regions and five nuclear genes for 817 individuals (47 populations) of 23 Eriobotrya species (including 19 populations of 12 species in the YGP), plus genome re-sequencing of 33 representative samples. We concluded that: (1) phylogenetic positions for 16 species exhibited strong cytonuclear conflicts, most probably due to ancient hybridization; (2) the YGP is a hotspot for hybridization, with 11 species showing clear evidence of chloroplast capture; and (3) Eriobotrya probably originated in tropical Asia during the Eocene. From the Miocene onwards, the intensification of the Eastern Asia monsoon and global cooling may have shifted the tropical-subtropical boundary and caused secondary contact between species, thus providing ample opportunity for hybridization and diversification of Eriobotrya, especially in the YGP. Our study highlights the significant role that paleoclimate changes probably played in driving hybridization and generating rich species diversity in climate transition zones.

Interactive effects of land-use intensity, grazing and fire on decomposition of subtropical seasonal wetlands

Understanding how global change drivers and their interactions affect decomposition in wetlands embedded in agricultural landscapes remains challenging, especially in tropical and subtropical biomes, which are disproportionately important for global carbon cycling yet with high uncertainties. In a long-term whole-ecosystem experiment, we used a widely-adopted indicator of decomposition, the Teabag Index (TBI), to investigate individual and interactive effects of surrounding land-use intensity, cattle grazing, and prescribed fire on seasonal wetland decomposition (i.e., decay rate k, and stabilization factor S) in an exemplar subtropical landscape in central-south Florida, USA. We ask: (1) How do land-use intensity and management practices affect the decomposition in seasonal wetlands? (2) How does wetland decomposition vary with hydrological gradient and seasonal climatic condition? (3) What are the dominant direct and indirect pathways through which land-use intensity and management practices affect wetland decomposition? Our results showed that, overall, surrounding land-use intensity exerted much stronger effects on litter decomposition compared to grazing and prescribed fire, and cattle grazing reduced decomposition rate k. There was a complex three-way interaction among land-use intensity, grazing and fire on the stabilization factor S – a proxy related to carbon sequestration potential. Grazing-fire interactive effects on S only existed in wetlands embedded in intensively-managed landscapes, where grazing reduced S in burned wetlands but did not affect S in unburned wetlands. Decay rate k showed profound temporal variation primarily driven by seasonal climatic conditions (especially precipitation), whereas S varied spatially along the hydrological gradient. Our structural equation modeling (SEM) analyses further revealed that effects on k were also indirectly manifested through changes on soil C/N, C/P, and pH, while effects on S were manifested through alterations in soil C/P ratio, pH, soil nutrients and water content. Our TBI results suggest that anthropogenic environmental changes, including land-use intensification, livestock introduction and fire suppression, could compromise carbon sequestration potential in tropical and subtropical seasonal wetlands. Our research highlights the importance of considering landscape context in wetland management and demonstrates the use of TBI as an indicator to quantify and inform combinations of land management and agricultural practices could conserve wetlands and sustain their vital functions and services, especially from the lens of promoting carbon storage and nutrient retention services.

Annual changes in the Biodiversity Intactness Index in tropical and subtropical forest biomes, 2001–2012

Few biodiversity indicators are available that reflect the state of broad-sense biodiversity—rather than of particular taxa—at fine spatial and temporal resolution. One such indicator, the Biodiversity Intactness Index (BII), estimates how the average abundance of the native terrestrial species in a region compares with their abundances in the absence of pronounced human impacts. We produced annual maps of modelled BII at 30-arc-second resolution (roughly 1 km at the equator) across tropical and subtropical forested biomes, by combining annual data on land use, human population density and road networks, and statistical models of how these variables affect overall abundance and compositional similarity of plants, fungi, invertebrates and vertebrates. Across tropical and subtropical biomes, BII fell by an average of 1.9 percentage points between 2001 and 2012, with 81 countries seeing an average reduction and 43 an average increase; the extent of primary forest fell by 3.9% over the same period. We did not find strong relationships between changes in BII and countries’ rates of economic growth over the same period; however, limitations in mapping BII in plantation forests may hinder our ability to identify these relationships. This is the first time temporal change in BII has been estimated across such a large region.

Current and future plant invasions in protected areas: Does clonality matter?

AbstractAimProtected areas (PAs) play an important role in biodiversity conservation, but remain increasingly threatened by invasive alien plant species (IAPS) in conjunction with global climate change. The latter is modifying the distribution of the former, and the magnitude and direction of distributional changes are predicted to vary depending on species dispersal mode. Here, we address the question of whether clonality is expected to affect the future invasion pattern in PAs.LocationWorldwide.Time period1950–2100.Major taxa studied36 invasive alien plant species.MethodsWe used ensembles of three species distribution models (GLM, GAM and Maxent) based on &gt;70,000 occurrence records to project the distribution of 36 of the world's most invasive clonal and non‐clonal plants in &gt;20,000 PAs. Projections were based on three greenhouse gas concentration scenarios (low, medium and high) for 2080.ResultsClimate change showed little impact on the global invasion pattern in PAs, and clonality showed little effect when all biomes were processed in concert. However, we discerned that the future invasion risk of clonal IAPS markedly increased in biomes located at high elevation and high latitude compared with non‐clonal IAPS, while the risk decreased in lower‐elevation tropical and subtropical biomes where asexual reproduction may be a less successful trait. We also showed that invasion hot spots overlapped with biodiversity hot spots and two realms (i.e. Nearctic and Palearctic), which calls for bridging the gap between invasion and conservation sciences and for more concerted management strategies.Main conclusionsWe suggest that effective management of IAPS in PAs should consider in which biomes PAs are located as well as the reproductive traits of IAPS that are present or may become so.

The diversification of termites: Inferences from a complete species‐level phylogeny

AbstractTermites play a major role in a variety of ecological processes in tropical and subtropical biomes worldwide, such as decomposition, soil formation and aeration, and nutrient cycling. These important ecosystem services were achieved through their highly complex societies and remarkable adaptations, including the evolution of reproductive division of labour, the acquisition of endosymbionts and the capacity for extensive environmental engineering, yet the causes and consequences of their ecological success are still poorly understood. The goals of our study were (a) to provide the first complete, species‐level phylogeny of all currently recognized termite species by integrating the available genetic and taxonomic data, as well as methods of phylogenetic imputation and divergence time estimation; and (b) to explore variation in speciation rates among termite lineages. We provide the inferred relationships as a set of 1,000 pseudo‐posterior trees, which can be used in future comparative analyses. We demonstrate that speciation rates have been relatively constant throughout the history of termites, with two positive shifts in speciation rates: one at their origin of Euisoptera and the other concordant with evolution of Termitidae. On the other hand, there was no obvious trend towards deceleration in speciation rates for termites as a whole, nor within the most species‐rich families. The provided trees might represent a valuable resource for termite comparative studies by summarizing the available phylogenetic information, while accounting for uncertainty in the inferred topologies.

Molecular phylogeny of Megasternini terrestrial water scavenger beetles (Hydrophilidae) reveals repeated continental interchange during Paleocene‐Eocene thermal maximum

AbstractMegasternini is the largest group of terrestrial water scavenger beetles (Coleoptera: Hydrophilidae) represented by ca. 600 described species distributed worldwide. The highest species diversity is known from tropical areas of all continents. In this study, we used sequences of eight gene regions (five nuclear and three mitochondrial) to investigate the phylogenetic relationships and historical biogeography of this group, implementing maximum likelihood (ML) and Bayesian topology inference, Bayesian divergence dating, ML‐based ancestral area estimation and Bayesian diversification analyses. Topology analyses reveal two main lineages of Megasternini characterized by the morphology of male genitalia and surrounding sclerites; these lineages are defined here as subtribes Megasternina Mulsant and Oosternina new subtribe. We identify 12 principal clades of Megasternini, three in Oosternina and nine in Megasternina. These clades group the taxa largely by their geographic distribution rather than morphology, indicating a parallel evolution of morphological characters. Genera Cercyon Leach, Oosternum Sharp, Cetiocyon Hansen, Australocyon Hansen and Pelosoma Mulsant were not recovered as monophyletic. Species of Cercyon, the most diverse genus in the tribe, are found in all principal clades in both subtribes. These results suggest a need for the reorganization of generic concepts in the tribe. The historical biogeography analysis reveals a series of parallel intercontinental dispersal events, including the colonization of South America by Australian members of Oosternina ca. 90 million years ago (mya) and at least five dispersal events between Asia and America ca. 63–55 mya via the Beringia land bridge. The timing of the Asia‐America faunal interchange corresponds to the hyperthermal climate of the Late Paleocene and Early Eocene that allowed the expansion of tropical and subtropical biomes towards polar regions. Diversification analyses revealed no effect of intercontinental dispersals on speciation or extinction rates and suggested a possible effect of declining global temperatures in the last 20 million years.

Biome partitioning of the global ocean based on phytoplankton biogeography

Biomes are geographical units that can be defined based on biological communities sharing specific environmental and climatic requirements. Contemporary ocean biomes have been constructed based on various approaches. These included the biogeographic patterns of higher trophic level organisms, physical and biogeochemical properties, or bulk biological properties such as chlorophyll-a, but none considered the biogeographic patterns of the first trophic level explicitly, i.e. phytoplankton biogeography. A global description of marine biomes based on phytoplankton and defined in analogy to terrestrial vegetation biomes is still lacking. A bioregionalization based on phytoplankton appears particularly timely, as phytoplankton have a high sensitivity to climatic changes and fuel marine productivity. Here, we partition the global ocean into biomes by using self-organizing maps and hierarchical clustering, drawing on the biogeographic patterns of 536 phytoplankton species predicted from empirical evidence. Our approach reveals eight different biomes at the seasonal scale, and seven at the annual scale. The biomes host characteristic phytoplankton species compositions, and differ in their prevailing environmental conditions. The largest differences in phytoplankton composition are found between a Pacific equatorial biome and other tropical biomes, and between subtropical and high latitude biomes. The Pacific equatorial biome is characterized by species with narrower ecological niches, the tropical and subtropical biomes by cosmopolitan generalists, and the high latitudes by species with a heterogeneous biogeography. The strongest differences between biomes are found along gradients of temperature and macronutrient availability, associated with latitude. We test whether our biomes can be reproduced based on indicator species, or potential co-occurrence networks of species determined from the predicted species distributions that are wide-spread in some but rare in other biomes. We find that our biomes can be reproduced by the 51 species identified, which together form significant species co-occurrences. This suggests that species co-occurrences, rather than individual indicator species drive oceanic biome partitioning at the first trophic level. Our biome partitioning may be especially useful for comparative analyses on the functional implications of phytoplankton organization, and impacts on zoogeographical partitionings. Furthermore, it provides a framework for predicting large-scale changes in phytoplankton community structure due to anthropogenic climate and environmental change.

A review of the distribution and host plant associations of the platypodine ambrosia beetles (Coleoptera: Curculionidae: Platypodinae) of Australia, with an electronic species identification key

Ambrosia beetles (Platypodinae and some Scolytinae) are ecologically and economically important weevils (Coleoptera: Curculionidae) that develop within the sapwood and heartwood of woody plants, and their larval and adult stages are dependent on fungal symbionts. Platypodinae mostly occur in tropical and subtropical biomes, with a few species occurring in temperate regions. Australia has 44 recorded platypodine species including 13 species which may only have been intercepted at or near ports of entries and are without established populations in Australia. The host tree associations and biogeography of Australian Platypodinae are largely undocumented, and no comprehensive identification key exists. Here, we review species records, host tree associations, biogeographic distributions, and morphological characteristics of Australian Platypodinae. For this, we examined collection specimens, monographs, catalogues, taxonomic inventories, journal articles and online databases, and developed an electronic LUCID identification key for 36 species recorded in Australia. This review and identification key will be a valuable resource for forestry managers and biosecurity officers and will support diagnostics and future research of these beetles, their biology, and ecological interactions.