Poly(γ-glutamylation) of glutamate (L-Glu)-containing antifolates and natural folates is important in pharmacological mechanisms and in physiological processes. Based on previous work from our laboratories, we hypothesized that replacement of the L-Glu moiety in parent molecules with DL-β,β-difluoroglutamic acid (DL-β,β-F 2Glu) might be a generic means of increasing polyglutamylation by both increasing the synthesis rate and decreasing the degradation rate (J. J. McGuire et al., J. Biol. Chem. 265, 14073-14079 (1990)); thus biological potency might be increased without other biochemical properties being altered. DL-β,β-F 2Glu, synthesized by an improved route (B. P. Hart and J. K. Coward, Tetrahedron Lett. 34, 4917-4920 (1993)), has been incorporated into a methotrexate (MTX) homolog, β,β-difluoromethotrexate (β,β-F 2MTX), and a folic acid (PteGlu) homolog, β,β-difluorofolic acid (β,β-PteF 2Glu). Biochemical properties of β,β F 2MTX (e.g., inhibition of isolated dihydrofolate reductase, transport in whole cells) are similar to those of MTX except that, in accord with our hypothesis, apparent substrate efficiency for rat and human folylpolyglutamate synthetase (FPGS) is 4- to 7.5-fold higher, respectively, for β,β-F 2MTX than for MTX. Analysis of the products synthesized by purified FPGS, however, suggests that while addition of the first γ-Glu to β,β-F 2MTX is highly efficient, subsequent additions occur at a negligible rate; this premise was confirmed by directly comparing the in vitro FPGS substrate activity of MTX-γ-Glu and β,β-F 2MTX-γ-Glu. Furthermore, the dramatically diminished in vitro growth inhibitory potency of β,β-F 2MTX as compared to MTX when exposure time to drug is decreased (despite otherwise similar biochemical properties) suggests that polyglutamylation is also impaired in intact cells. Similar results with FPGS have been obtained with oxidized and reduced forms of β,β-PteF 2Glu. These data suggest that the effect of β,β-F 2Glu on polyglutamylation by FPGS is dependent on its position relative to the point of L-Glu ligation. When β,β-F 2Glu is the acceptor amino acid (i.e., point of attachment), ligation of Glu is enhanced; however, if β,β-F 2Glu is one residue distal to the acceptor amino acid, further elongation is blocked.