Biosensor Substrate Research Articles

A DFTB study on the electronic response of encapsulated DNA nucleobases onto chiral CNTs as a sequencer

Sequencing the DNA nucleobases is essential in the diagnosis and treatment of many diseases related to human genes. In this article, the encapsulation of DNA nucleobases with some of the important synthesized chiral (7, 6), (8, 6), and (10, 8) carbon nanotubes were investigated. The structures were modeled by applying density functional theory based on tight binding method (DFTB) by considering semi-empirical basis sets. Encapsulating DNA nucleobases on the inside of CNTs caused changes in the electronic properties of the selected chiral CNTs. The results confirmed that van der Waals (vdW) interactions, π-orbitals interactions, non-bonded electron pairs, and the presence of high electronegative atoms are the key factors for these changes. The result of electronic parameters showed that among the CNTs, CNT (8, 6) is a suitable choice in sequencing guanine (G) and cytosine (C) DNA nucleobases. However, they are not able to sequence adenine (A) and thymine (T). According to the band gap energy engineering approach and absorption energy, the presence of G and C DNA nucleobases decreased the band gap energy of CNTs. Hence selected CNTs suggested as biosensor substrates for sequencing G and C DNA nucleobases.

Thermo‐mechanical properties and optimization of sodium alginate as a polymer backbone substrate for biosensor application

AbstractThis study was aim to optimize the formulation of the sodium alginate biosensor substrate with incorporation of sodium alginate (1%‐6%(w/v)) as a polymer backbone and glycerol (10–50 wt%) as a plasticizer. The effect of their interaction on film's tensile strength (TS) and elongation at break (EB) were analyzed via response surface methodology‐central composite design (RSM‐CCD). The optimum parameter of the films for the maximum TS was at 1.90%(w/v) of sodium alginate and 17 wt% of glycerol and for maximum EB was at 4.89%(w/v) of sodium alginate and 49.65 wt% of glycerol. The optimum parameter of the films had revealed the better TS was at lower sodium alginate content and better EB was at higher glycerol content. In terms of thermal stability, the thermal decomposition temperature (Tonset) of sodium alginate decreased with the incorporation of glycerol.

Potential of a deep eutectic solvent in silver nanoparticle fabrication for antibiotic residue detection.

Deep eutectic solvents (DESs) have recently emerged as an alternative solvent for nanoparticle synthesis. There have been numerous advancements in the fabrication of silver nanoparticles (Ag NPs), but the potential of DESs in Ag NP synthesis was neither considered nor studied carefully. In this study, we present a novel strategy to fabricate Ag NPs in a DES (Ag NPs-DES). The DES composed of ᴅ-glucose, urea, and glycerol does not contain any anions to precipitate with Ag+ cations. Our Ag NPs-DES sample is used in a surface-enhanced Raman scattering (SERS) sensor. The two analytes for SERS quantitation are nitrofurantoin (NFT) and sulfadiazine (SDZ) whose residues can be traced down to 10-8 M. The highest enhancement factors (EFs) are competitive at 6.29 × 107 and 1.69 × 107 for NFT and SDZ, respectively. Besides, the linearity coefficients are extremely close to 1 in the range of 10-8 to 10-3 M of concentration, and the SERS substrate shows remarkable uniformity along with great selectivity. This powerful SERS performance indicates that DESs have tremendous potential in the synthesis of nanomaterials for biosensor substrate construction.

Measurement of microRNA-106b as a gastric cancer biomarker based on Zn-BTC MOF label-free genosensor

Due to the late detection of stomach cancer, this cancer usually causes high mortality. The development of an electrochemical genosensor to measure microRNA 106b (miR-106b), as a gastric cancer biomarker, is the aim of this effort. In this regard, first, 1,3,5-benzenetricarboxylate (BTC) metal-organic frameworks (Zn-BTC MOF) were self-assembled on the glassy carbon electrode and then the probe (ssDNA) was immobilized on it. The morphology Zn-BTC MOF was characterized by SEM, FT-IR, Raman and X-Ray techniques. Zn-BTC MOF as a biosensor substrate has strong interaction with ssDNA. Quantitative measurement of miR-106b was performed by electrochemical impedance spectroscopy (EIS). To perform this measurement, the difference of the charge transfer resistances (ΔRct) of Nyquist plots of the ssDNA probe modified electrode before and after hybridization with miR-106b was obtained and used as an analytical signal. Using the suggested genosensor, it is possible to measure miR-106b in the concentration range of 1.0 fM to 1.0 μM with a detection limit of 0.65 fM under optimal conditions. Moreover, at the genosensor surface, miR-106b can be detected from a non-complementary and a single base mismatch sequence. Also, the genosensor was used to assess miR-106b in a human serum sample and obtained satisfactory results.

The Potential of Double-Faced Polyester-Viscose Woven Fabric as a Porous Substrate for Direct-Coating and Multilayer Concept.

Textile-based sensors fabricated using the direct-coating method are the appropriate choice to meet the aspects of flexibility, non-invasiveness, and lightness for continuous monitoring of the human body. The characteristics of the sensor substrate are directly influenced by factors such as the type of weave, thread fineness, fabric density, and the type of polymeric constituent fibers. The fabric used as the sensor substrate, fabricated using the direct-coating method, must be capable of retaining the electrode paste solution, which has higher viscosity, on one surface of the fabric to avoid short circuits during the fabrication process. However, during its application, this fabric should allow the easy passage of analyte solutions with low viscosity as much as possible. Hence, an appropriate fabric construction is required to serve as the substrate for textile-based sensors to ensure the success of the fabrication process and the effectiveness of the resulting sensor's performance. The development of the structural design of the fabric to be used as a substrate for non-invasive biosensors with a multilayer concept is carried out by weaving and sewing processes utilizing polyester-viscose fibers. During the production process, variations are applied, such as weft yarn density, the characterization of wetting time, absorption rate, maximum wetted radius, spreading speed, and accumulative one-way transport index. The most suitable fabric for use as a substrate for non-invasive biosensors with a multilayer concept, such as in this research, is a fabric with a weft thread density of 70 strands per inch, along with the addition of an analyte transfer thread configuration.

Mill Scale-Derived Magnetite Nanoparticles: A Novel Substrate for Lactate Oxidase-Based Biosensors.

Recycling and revalorization of waste are currently essential for sustainable growth. Mill scale, a waste product from steel production industries, which contains high levels of iron and minimal impurities, is proposed in this study as the source to synthesize magnetite nanoparticles (Fe3O4) for an enhancement of a lactate biosensor range. The synthesized Fe3O4 nanoparticles were coated with polydopamine (PDA) to prevent aggregation and degradation, creating a stable platform for immobilizing lactate oxidase enzyme (LOx) on their surfaces. The characterization of the Fe3O4@PDA material was carried out using transmission electron microscopy (TEM), dynamic light scattering (DLS), and measurement of the polydispersity index (PdI). The Fe3O4@PDA-LOx material was then deposited on a screen-printed carbon electrode modified with Prussian blue (SPCE-PB) for lactate detection. The biosensor exhibited a broad, dual linear concentration-response range, one from 0.1 to 4.62 mM with a limit of detection of 0.32 mM and sensitivity of 1.54 μAmM-1cm-2, and another one from 4.62 to 149.21 mM with a limit of detection of 6.31 mM and sensitivity of 0.08 μAmM-1cm-2. The dual-range concentration response of the biosensor makes it an ideal tool for lactate determination in various applications, including sports medicine, clinical diagnosis, and industrial bioprocessing.

Electrochemiluminescence Sensor with Controlled-Release Triggering Electrostatic Attraction Elimination Mechanism for Trenbolone Trace Detection.

A controlled-release strategy can meet the needs of sensitive environmental monitoring for pollutants through a self-on/off mode. In this work, an electrochemiluminescence (ECL) biosensor with controlled-release triggering electrostatic attraction elimination and biomolecular stimulated response strategies was constructed to detect environmental steroid hormones sensitively. The blocked pores on the aminated mesoporous silica nanocontainers were opened by specific binding between the trenbolone (TB) antigen and the antibody. The released l-cysteine counteracted the negative charge on the MnO2 NF surface through the redox reaction between -SH and MnO2, making the electrostatic interaction between the MnO2 NFs and the Ru(dcbpy)32+ disappear. Ru(dcbpy)32+ released an ECL signal on the electrode, thus completing the controlled-release triggering electrostatic attraction elimination strategy. In addition, with the TB antibody as the target and the competition strategy between the TB antigen and the standard substance, the constructed controlled-release ECL biosensor was used to detect the TB standard substance. Moreover, MnO2 NFs as the substrate of the ECL biosensor increased the active specific surface area of the electrode, effectively catalyzing the production of OH• and O2•-, thus endowing the ECL biosensor with coreactant-catalytic enhancement characteristic and further improving its ECL performance. This sensitive signal response brought about a low limit of detection of 2.53 fg/mL for the constructed ECL biosensor, which contributed a feasible idea for efficient trace analysis of pollutants in the environment.

Ionic liquids functionalized Fe3O4-based colorimetric biosensor for rapid determination of ochratoxin A.

Astainless steel mesh (SSM) with the feature of flexibilitywas employedas the colorimetric biosensor substrate, and aptamer was bond onto the surface of theSSM. Through the cross-linking of ionic liquids (ILs), AuPt nanoparticles were deposited onto the surface of Fe3O4 material to obtain a magnetic nanozyme with high peroxidase catalytic activity and rapid color change. Through the competinginteraction of OTA and cDNA with aptamer, AuPt@IL@Fe3O4 signal probe was separated to catalyze the 3,3',5,5'-tetramethylbenzidine/hydrogen peroxide (TMB/H2O2) system to observe the color by bare eyeand record the absorbance at 652 nm using a UV-spectrophotometer. Through the study of the catalytic properties on the basis of the Michaelis equation, AuPt@IL@Fe3O4 nanozyme presented a Vmax of 3.85 × 10-8 M s-1 and Km of 0.01 mM. Under the optimized conditions, the linear range of the colorimetric biosensor towards OTA was 5-100 ng mL-1, and the detection limit was 0.078 ng mL-1. This biosensor was applied tobeer and corn samples with recoveries of 70.4-102.6% and 93.3-104.7%, respectively. Results showed that this sensor is aportable, rapid,economical, sensitive visual sensing platform towards mycotoxin in real samples.

An amperometric biosensor and its steady state current in the case of substrate and product inhibition: Taylors series method and Adomian decomposition method

In this paper, an amperometric biosensor model with substrate and product inhibition kinetics is analysed. This model is a steady-state system of reaction-diffusion equations with non-linear terms related to non-Michaelis-Menten kinetics of an enzymatic reaction. We present the approximate analytical expression of the substrate and product concentrations using well-founded methods, namely the Taylors series method (TSM) and the Adomian decomposition method (ADM). These methods proved that they fit for all values of parameters in this model. The steady-state biosensor current, biosensor substrate sensitivity and resistance are also discussed. We also present the numerical solution of the described model using MATLAB programming, and it is noted that there is satisfactory agreement in comparing the analytical solution with numerical results for all possible values of parameters. The effects of the parameters, such as inhibition constants, diffusion parameters, bulk concentration and Michaelis-Menten constant on the sensitivity and the resistance of the biosensor are analysed.

The PVDF-HFP/Ag NWs-based wide electrochemical stability window ECL system for miRNA 21 detection in gastric cancer ascites

Due to the limitation of the electrochemical stability window (ESW), the high potential usually led to more side reactions during the electrochemical reaction. Therefore, a novel electrochemiluminescence (ECL) sensor with wide ESW was constructed in this study. Poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-HFP)/silver nanowires (Ag NWs) composite was used as the substrate of the ECL biosensor. PVDF-HFP was good mechanical strength, high temperature stability and electrochemical stability. Meanwhile, Ag NWs with excellent electrical conductivity, light transmission and flexibility were employed to improve the charge transfer efficiency in the PVDF-HFP and provide binding sites for biomolecules. The optimized ESW of PVDF-HFP/Ag NWs/GCE was up to 3.717 V. Furthermore, titanium nanoclusters (Ti NCs) were synthesized and used as the aggregation-induced ECL (AIECL) probe. In addition, the biosensor achieved the good quantitative detection of miRNA 21 in ascites of gastric cancer patients within the linear range of 1 fM − 1 nM.

Two-photon nanolithography of positive photoresist of AZ 5214E with a spatial resolution at nanoscale

The authors investigated two-photon nanolithography (TPNL) of positive AZ 5214E photoresist thin film with a spatial resolution at nanoscale. A continuous trench with average width of 101 nm was obtained, and a trench with several break points but feature width of 19 nm was fabricated by further increasing the scanning speed. Hole arrays composed of holes with diameters of about 451 nm and period of 800 nm were also fabricated with this photoresist. These results not only reveal that the TPNL of positive photoresist can obtain similar spatial resolution to that of negative photoresists, but also have extensive application prospection in fabrications of integrated circuits, microfluidic devices, surface-enhanced Raman scattering (SERS) substrates, catalyst, and biosensor substrates.

Two-photon shape-modulated maskless lithography of positive photoresist of S1813

The authors systematically investigated influence factors for two-photon maskless lithography of S1813 photoresist. A trench with a width of 155 nm, about 1/5 of the laser wavelength, was fabricated by accurate tuning the scanning speed. Two-photon shape-modulated maskless lithography, a method which employs different combined scanning and exposing approaches was proposed and studied. The patterns of rectangle, parallelogram, rice grain, arc, and “x” letter, and the quatrefoil hole patterns with different shape hearts, were all fabricated by using this method. This work is a protocol for lithography of S1813 photoresist with a high spatial resolution and flexibility. The fabricated trenches and diverse micro/nano patterns can be applied in the fabrication of integrated circuits, metamaterials structures, and SERS and biosensor substrates. This work will be conducive to the development and application of the two-photon maskless lithography of S1813.

A Novel Magnetoelastic Biosensor With Flexible TbDyFe Film as Sensing Materials for Osteoarthritis Marker MMP-3 Detection

A new design of flexible magnetoelastic (ME) biosensor based on TbDyFe/polystyrene-poly (ethylene-butylene)-polystyrene block copolymer (SEBS) film for the osteoarthritis (OA) marker matrix metalloproteinase 3 (MMP-3) detection is presented. This article studied a novel flexible ME film to replace the traditional rigid substrate for biosensors. The magnetostrictive material of TbDyFe was mixed homogeneously with paraffin solution to fabricate TbDyFe fluid, which was reacted at high temperature with SEBS in a certain ratio to prepare the film. TbDyFe/SEBS films were used as substrates for the immobilization of MMP-3 antibodies. Specific binding of antibodies to MMP-3 antigens generated compressive stress on the substrate surface, which in turn led to changes in magnetic permeability and impedance. To improve the sensitivity of the biosensor, the TbDyFe doping concentration was optimized and the magnetic response performance of the TbDyFe/SEBS composite film was measured. The results show that this assay is capable of detecting concentrations of MMP-3 between 0.76 and 10000 ng <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$\cdot $ </tex-math></inline-formula> mL−1 with a detection limit of 0.76 ng <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$\cdot $ </tex-math></inline-formula> mL−1, covering the range of clinical tests required for the diagnosis of OA. This novel flexible ME biosensor provides a viable method for the diagnosis and monitoring of OA.

Target-responsive aptamer-cross-linked hydrogel sensors for the visual quantitative detection of aflatoxin B1 using exonuclease I-Triggered target cyclic amplification.

For the on-site detection of aflatoxin B1 (AFB1), a DNA hydrogel was prepared as a biosensor substrate, while an AFB1 aptamer was used as the recognition element. An AFB1-responsive aptamer-cross-linked hydrogel sensor was constructed using an enzyme-linked signal amplification strategy; AFB1 binds competitively to the aptamer, causing the hydrogel to undergo cleavage and release horseradish peroxidase (HRP). The addition of exonuclease I (ExoI) to the hydrogel causes the release of AFB1 from the aptamer, promoting additional hydrogel cleavage to release more HRP, ultimately catalysing the reaction between 3,3',5,5'-tetramethylbenzidine and H2O2. The hydrogel sensor exhibited an outstanding sensitivity (limit of detection, 4.93nM; dynamic range, 0-500nM), and its selectivity towards seven other mycotoxins was confirmed. The feasibility and reliability were verified by measuring the AFB1 levels in peanut oil (recoveries, 89.59-95.66%; relative standard deviation, <7%); the obtained results were comparable to those obtained by UPLC-HRMS.

Plasmon-enhanced near-infrared fluorescence detection of traumatic brain injury biomarker glial fibrillary acidic protein in blood plasma

An ultrasensitive plasmonic near-infrared fluorescent biosensor substrate has been developed for detection of glial fibrillary acidic protein (GFAP) biomarker in blood plasma, an important protein biomarker of traumatic brain injury (TBI). To minimize the interference from blood plasma sample matrix, a near-infrared fluorophore in the first biological transparency window is used in the biosensor. To amplify the fluorescence signals, a plasmonic gold nanopyramid array has been coupled to the fluorophore. Finite-difference time-domain simulation reveals that the excitation enhancement is primarily responsible for the fluorescence enhancement owing to the intense local electric field excited on the corners and edges. As a result, this biosensor exhibits a lower limit of detection of 0.6 pg/mL toward detection of GFAP in blood plasma.

Graphene Oxide as a Substrate for Biosensors: Synthesis and Characterization

Graphene oxide (GO) is an oxidized nanosheets of graphite with a 2D planar structure. GO could be readily complexed with bio-entities as it possesses many oxygen-containing functionalities on its surface. The preparation process is fast, easy, and cost-effective. It was prepared using modified Hummers’ method in acidic solution as a primary solvent and potassium permanganate as an oxidizing agent. Afterwards, it was successfully characterized by FTIR, UV-visible spectroscopy, as well as XRD and Raman spectroscopy, and finally, SEM analysis. It was observed that the formed GO is mainly composed of carbon and oxygen elements rich in oxygen functional groups. Furthermore, the existence of (001) plane in XRD interprets the complete oxidation of graphite with d-spacing 9 Å. Moreover, Raman spectroscopy displayed the sp3 carbon hybridization, besides, the ID/IG ratio is found to be 0.84, which confirms the disorder between graphene oxide layers. The SEM images also pointed out that graphene oxide sheets were regularly stacked together as flake-like structures. Accordingly, the richness of oxygen-containing functionalities was confirmed. Hence, it is appropriate to be used as a base transducer for biosensing applications.

Computational design of single-stranded DNA hairpin aptamers immobilized on a biosensor substrate

Aptamer interactions with a surface of attachment are central to the design and performance of aptamer-based biosensors. We have developed a computational modeling approach to study different system designs—including different aptamer-attachment ends, aptamer surface densities, aptamer orientations, and solvent solutions—and applied it to an anti MUC1 aptamer tethered to a silica biosensor substrate. Amongst all the system designs explored, we found that attaching the anti MUC1 aptamer through the 5′ terminal end, in a high surface density configuration, and solvated in a 0.8 M NaCl solution provided the best exposure of the aptamer MUC1 binding regions and resulted in the least amount of aptamer backbone fluctuations. Many of the other designs led to non-functional systems, with the aptamer collapsing onto the surface. The computational approach we have developed and the resulting analysis techniques can be employed for the rational design of aptamer-based biosensors and provide a valuable tool for improving biosensor performance and repeatability.

Recent developments in flow modeling and fluid control for paper-based microfluidic biosensors

Over the last 10 years, researchers have shown that paper is a promising substrate for affordable biosensors. The field of paper-microfluidics has evolved rapidly in that time, with simple colorimetric assays giving way to more complex electrochemical devices that can handle multiple samples at a given time. As paper devices become more complex, the ability to precisely control different fluids simultaneously becomes a challenge. Specifically, automated flow control is a necessary attribute to make paper-based devices more useable in resource-limited settings. Flow control strategies on paper are typically developed experimentally through trial-and-error, with little focus on theory. This is because flow behavior in paper is not well understood and sometimes difficult to predict precisely. Additionally, popular theoretical models are too simplistic, making them unsuitable for complex device designs and application conditions. A better understanding of flow theory would allow devices conceived straight from theoretical models. This could save time and resources by reducing experimental work. In this review, we provide an overview of different theoretical models used to characterize imbibition in paper substrates and document the latest flow control strategies that have been applied to automated fluid control on paper. Additionally, we look at current efforts to commercialize paper-based devices along with challenges facing this industry.

Protein interactions with chemical vapor deposited graphene modified by substrate

Graphene has been utilized in sensors to detect a wide range of biomolecules (e.g. glucose, DNA, antigens, enzyme activity, dopamine) using various sensing modalities (e.g. surface plasmon resonance, potentiometry, electro-impedance spectroscopy, cyclic voltammetry). However, while graphene-based biosensors have been demonstrated in many different architectures, little attention has been given to the effects of the substrate that supports the atomically thin graphene layer. In this work, we investigate protein adhesion of model small (lysozyme), medium (bovine serum albumin), and large (fibrinogen) proteins on monolayer graphene with support substrates of varying hydrophobicity and surface polarity. Ex situ adsorption is measured via ellipsometry. For Au and Si support substrates, in situ adhesion of lysozyme is measured via quartz crystal microbalance. The results indicate that not only the equilibrium attachment, but also the kinetics of interaction, can be affected by the substrate. Overall, a more hydrophobic substrate leads to a larger amount of adsorption to graphene. Moreover, the effect is only observed with monolayer graphene, where no substrate effect is observed with the addition of a second graphene layer. This work indicates that the substrate of a graphene-based biosensor is an important but currently overlooked parameter when understanding and optimizing the performance of the device. The level of non-selective protein adsorption on graphene can be independently engineered through modifying the support substrate without directly modifying the graphene itself.

A novel biosensor based on Blu-ray disc coating film for determination of total amino acid content in tea leaves.

Biosensor substrate materials are a key research focus in the field of sensors. Blu-ray discs (BDs) as universal sensor substrates are advantageous in comparison with other substrates (conventional paper and polycarbonate) in terms of easier activity treatment and higher density of reactive groups on the film surface. In this study, a novel and simple microfluidic biosensor based on BD coating film was developed by treating with sodium hydroxide solution and a piece of filter paper at slightly elevated temperatures. There are no significant physical damages to the substrate morphology, and the aging effect is minimal. The unique wetting, optical, and self-cleaning properties of the modified surfaces can be demonstrated in the paper. We have tested this new type of biosensor substrates for assay applications (the determination of total amino acids in tea leaves), which showed excellent performance in terms of sensitivity and reproducibility. The novel biosensor substrate material based on a simple BD coating film displayed preferable merits with easy making, low cost, easy using, and extensive application prospect.