Zero-dimensional organic–inorganic hybrid metal halides are unique semiconductors with fruitful physical properties. Usually, only the inorganic polyhedrons dominate the band edge electronic and photophysical properties of such hybrid semiconductors, whereas the organic components mainly act as structure-stabilizing units. Herein, we study the electronic structures and photodynamics of isoelectronically Br-substituted (I) zero-dimensional organic–inorganic copper halide semiconductors (C9H14N)3Cu3(BrxI1−x)6. They are composed of both inorganic [Cu3(BrxI1−x)6]3− units and organic C9H14N+ skeletons. It is surprising to find that unlike usual organic–inorganic metal halides, although the heavily isoelectronic substitution of halogen atoms in the (C9H14N)3Cu3I6 crystal leads to significant shrinkage of the lattice, it does not remarkably alter the bandgap and luminescence peak owing to the site-projected density of states as revealed by the density functional theory calculation. The inorganic units dominate the valence band edge quantum states, whereas the organic skeletons dominate the conduction-band edge states. However, the isoelectronic substitution significantly lowers the symmetry of the crystal, and as a result, the quantum transition probability at the band edge increases first and decreases then with increasing concentration of substituting bromine atoms. The (C9H14N)3Cu3(BrxI1−x)6 crystals exhibit dual-band luminescence with large Stokes shift and near-unity quantum yield. It arises from the excitons trapped by two kinds of centers. The critical participation of the organic skeletons in the electronic structures and band edge photodynamics refresh our knowledge of their roles in the hybrid semiconductors.