Clarence Island and its inland channels are part of the Kawésqar National Park and Kawésqar National Reserve, an extensive wilderness area dominated by pristine sub-Antarctic environments and high marine biodiversity. During the summer and winter of 2020, the assemblages of birds and mammals were recorded in 10 sites, and these data, the following aspects were evaluated: 1) the sampling effort used with species accumulation curves and 2) the community structure of the assemblages with alpha and beta diversity. The total richness was 35 species of birds and 6 species of mammals, representing 17% of both groups documented for the sub-Antarctic Ecoregion of Magellan. During summer and winter, low and high values of species richness and abundance were registered, which modulated low and medium values of diversity. The moderate diversity was consistent with the beta diversity values from the Whittaker index, which on average indicates low species replacement in response to seasonal change. By considering that 20 % of the recorded species have high conservation risks, it can be concluded that this type of fauna survey contributes to improve the knowledge and dissemination of the current distribution of these species, and in future scenarios it will be useful to help predict local extinction events for anthropogenic or natural reasons.