Vegetation changes can affect soil organic carbon (SOC) content and storage by altering the inputs of plant biomass and the catabolism and anabolism of soil microorganisms. However, influence of vegetation degradation on aggregate associated carbon fractions and the contribution of different aggregates to total SOC in bulk soil remains poorly understood. In this study, undisturbed soil samples were collected from three types of grassland in Songnen grassland: an undegraded grassland (LEY, Leymus chinensis), a moderately degraded grassland (CHL, Chloris virgata), and a severely degraded grassland (SUA, Suaeda heteroptera). Three soil aggregates including macroaggregate (> 0.25 mm), microaggregate (0.053–0.25 mm) and silt and clay fraction (< 0.053 mm) were separated using wet sieving. Contents of total SOC, soil labile and stable carbon in bulk soil and different soil aggregates were measured. Compared with LEY, the mean weight diameter and geometric mean diameter under the degraded vegetation communities reduced by 39.42 % and 28.47 %, respectively. The reduction in SOC contents in bulk soil, macroaggregate, microaggregate and silt and clay fraction resulting from vegetation degradation was 49.81 %, 26.00 %, 76.17 % and 43.65 %, respectively. Under the degraded vegetation communities, contents of soil labile and stable carbon in bulk soil (45.73 % and 52.61 %, respectively), macroaggregate (17.38 % and 31.61 %, respectively), microaggregate (77.83 % and 74.18 %, respectively), and silt and clay fraction (21.20 % and 53.45 %, respectively) were significantly lower than those under LEY. The contribution of macroaggregate, microaggregate and silt and clay fraction to total SOC was 13.27 %, 23.61 % and 63.12 %, respectively. The contribution of soil aggregates to total SOC following vegetation degradation reduced by 53.63 % for microaggregate, but increased by 47.10 % for silt and clay fraction. These findings collectively indicate that vegetation degradation reduces the aggregate associated carbon content by reducing both labile and stable carbon fraction in Songnen grassland, and sustainable vegetation restoration strategies are need to enhance soil carbon storage in Northeast China.