AbstractObservations of the overall interactions between solar wind and the Earth's magnetosphere are crucial for space weather monitoring. Upcoming missions like the Solar Wind Magnetosphere Ionosphere Link Explorer (SMILE) and the Lunar Environment heliosphere X‐ray Imager (LEXI) aim to make comprehensive global imaging of Earth's magnetosphere using soft X‐ray imager (SXI) in order to understand its dynamic response to solar wind impact. Short‐duration X‐ray images have a low signal‐to‐noise ratio (SNR), limited by cosmic background and Poisson noise. Longer integration times provide better SNR of magnetospheric structures but fail to capture the short‐term dynamics during the integration. Our study introduces a neural network method which is able to estimate the short‐term dynamics during a long integration, driven by OMNI solar wind data and simulated soft X‐ray images. Specifically, an adaptive X‐ray image estimator and a spatio‐temporal discriminator are used. It leverages X‐ray models like Magnetohydrodynamic (MHD) and Jorgensen & Sun model, driven by OMNI data to provide high‐temporal‐resolution prior information on magnetosphere motion, with SXI observation images acting as a posterior constraint on the magnetosphere's state. Experimental validation demonstrates apparent improvements in Peak signal‐to‐noise ratio (PSNR) and Structural Similarity (SSIM) compared to traditional linear and optical flow interpolation methods. The method's flexibility, considering input‐output consistency, enables easy extension to any interval (>3 min), meeting diverse application needs. In conclusion, our study presents a new approach to soft X‐ray image estimation based on neural networks, providing insights into magnetospheric dynamics as observed in soft X‐rays.