This paper describes an advanced coupling method of finite element and discrete element called the Continuum-Discontinuum Element Method (CDEM). In this study, the Barton-Bandis model(BB model) for joint non-linear deformation is introduced into the CDEM to investigate the propagation of stress waves in jointed rock masses. The paper provides a detailed account of the development process of the BB model. Then, the developed model is utilized to simulate several representative cases of stress wave propagation in jointed rock masses, revealing the principles of stress wave propagation in jointed rock masses. The findings of this study demonstrate that the simulation results of the CDEM exhibit favorable consistency with experimental and theoretical results. This confirms the capability of the CDEM to accurately and effectively simulate stress wave propagation in jointed rock masses, thereby expanding the applicability of the CDEM. This research provides powerful support for further understanding and analysis of stress wave propagation problems in jointed rock masses.