Streptomyces Murinus Research Articles

Efficacy of Streptomyces murinus JKTJ-3 in Suppression of Pythium Damping-Off of Watermelon.

Damping-off caused by Pythium aphanidermatum (Pa) is one of the most destructive diseases for watermelon seedlings. Application of biological control agents against Pa has attracted the attention of many researchers for a long time. In this study, the actinomycetous isolate JKTJ-3 with strong and broad-spectrum antifungal activity was screened from 23 bacterial isolates. Based on the morphological, cultural, physiological, and biochemical characteristics as well as the feature of 16S rDNA sequence, isolate JKTJ-3 was identified as Streptomyces murinus. We investigated the biocontrol efficacy of isolate JKTJ-3 and its metabolites. The results revealed that seed and substrate treatments with JKTJ-3 cultures showed a significant inhibitory effect on watermelon damping-off disease. Seed treatment with the JKTJ-3 cultural filtrates (CF) displayed higher control efficacy compared to the fermentation cultures (FC). Treatment of the seeding substrate with the wheat grain cultures (WGC) of JKTJ-3 exhibited better control efficacy than that of the seeding substrate with the JKTJ-3 CF. Moreover, the JKTJ-3 WGC showed the preventive effect on suppression of the disease, and the efficacy increased with increase in the inoculation interval between the WGC and Pa. Production of the antifungal metabolite actinomycin D by isolate JKTJ-3 and cell-wall-degrading enzymes such as β-1,3-glucanase and chitosanase were probably the mechanisms for effective control of watermelon damping-off. It was shown for the first time that S. murinus can produce anti-oomycete substances including chitinase and actinomycin D. This is the first report about S. murinus used as biocontrol agent against watermelon damping-off caused by Pa.

Safety evaluation of the food enzyme AMP deaminase from the non-genetically modified Streptomyces murinus strain AE-DNTS.

The food enzyme AMP deaminase (AMP aminohydrolase; EC 3.5.4.6) is produced with the non-genetically modified Streptomyces murinus strain AE-DNTS by Amano Enzyme Inc. The food enzyme is free from viable cells. It is intended to be used in yeast processing and the production of mushroom extracts. Dietary exposure to the food enzyme-total organic solids (TOS) was estimated to be up to 0.0004 mg TOS/kg body weight (bw) per day in European populations. The food enzyme batches, including the batch used in the toxicological studies, were not fully characterised. A search for the similarity of the amino acid sequence of the food enzyme to known allergens was made and no match was found. The Panel considered that, under the intended conditions of use, the risk of allergic reactions by dietary exposure cannot be excluded, but the likelihood is low. In the absence of adequate toxicological data, the Panel could not conclude on the safety of the food enzyme AMP deaminase from the non-genetically modified Streptomyces murinus strain AE-DNTS.

Reclassification of Streptomyces costaricanus and Streptomyces phaeogriseichromatogenes as later heterotypic synonyms of Streptomyces murinus.

This study aimed to clarify the taxonomic relationships among Streptomyces costaricanus, Streptomyces graminearus, Streptomyces murinus and Streptomyces phaeogriseichromatogenes. These strains share the same 16S rRNA gene sequence. Multilocus sequence analysis revealed that S. costaricanus, S. murinus and S. phaeogriseichromatogenes belong to the same species, but S. graminearus does not. Digital DNA-DNA relatedness and average nucleotide identity among S. costaricanus, S. murinus and S. phaeogriseichromatogenes were 70.9-74.6% and 96.5-97.0 %, respectively. In addition to the previously reported phenotypic data, the presence of a similar set of secondary metabolite-biosynthetic gene clusters for polyketides and nonribosomal peptides supported the similarity among the three species. Therefore, S. costaricanus and S. phaeogriseichromatogenes should be reclassified as later heterotypic synonyms of S. murinus.

Bazı 3-imino-4-sübstitüe-1,2,5-tiroidyazolidin 1,1-dioksitlerin antibakteriyel etkisi

Organosulfur compound's functionality constitutes an essential class of therapeutic agents in current medicinal chemistry. Especially sulfonamides called sulfa drugs were performed as both chemotherapeutic agents and useful antibacterial derivatives developed for medicine. The sulfamides in the same family with the sulfonamides have similar biological activities. In our research, it was studied with some 3-imino-4-substituted-1, 2, 5-thiadiazolidine 1,1-dioxides (ISTDs- 4a-d, four samples) that are five-membered cyclosulfamides. These compounds were previously synthesized and structurally characterized. The goals of this study are to investigate minimum inhibition concentration (MIC) values and antibacterial effects of these ISTDs compounds on Bacillus subtilis NRRL B-209T, Escherichia coli ATCC®25922T, Micrococcus luteusNRRL B-1018T, Nocardia abscessus DSM 44432T, Nocardia cyriacigeorgica DSMZ 44484T, Pseudomonas aeruginosa NRRL B-2679T Staphylococcus aureus ATCC®6538T, Streptomyces murinus ISP 5091T.

Genome-based analyses reveal the presence of 12 heterotypic synonyms in the genus Streptomyces and emended descriptions of Streptomyces bottropensis, Streptomyces celluloflavus, Streptomyces fulvissimus, Streptomyces glaucescens, Streptomyces murinus, and Streptomyces variegatus.

Phylogenetic analysis based on 16S rRNA gene sequences of the genus Streptomyces showed the presence of six distinguishable clusters, with 100 % sequence similarity values among strains in each cluster; thus they shared almost the same evolutionary distance. This result corroborated well with the outcome of core gene (orthologous gene clusters) based genome phylogeny analysis of 190 genomes including the Streptomyces species in those six clusters. These preeminent results led to an investigation of genome-based indices such as digital DNA-DNA hybridization (dDDH), average nucleotide identity (ANI) and average amino acid identity (AAI) for the strains in those six clusters. Certain strains recorded genomic indices well above the threshold values (70 %, 95-96 % and >95 % for dDDH, ANI and AAI, respectively) determined for species affiliation, suggesting only one type strain belongs to described species and the other(s) may need to be reduced in taxa to a later heterotypic synonym. To conclude, the results of comprehensive analyses based on phylogenetic and genomic indices suggest that the following six reclassifications are proposed: Streptomyces flavovariabilis as a later heterotypic synonym of Streptomyces variegatus; Streptomyces griseofuscus as a later heterotypic synonym of Streptomyces murinus; Streptomyces kasugaensis as a later heterotypic synonym of Streptomyces celluloflavus; Streptomyces luridiscabiei as a later heterotypic synonym of Streptomyces fulvissimus; Streptomyces pharetrae as a later heterotypic synonym of Streptomyces glaucescens; and Streptomyces stelliscabiei as a later heterotypic synonym of Streptomyces bottropensis.

Safety evaluation of the food enzyme glucose isomerase from Streptomycesmurinus (strain NZYM-GA).

The food enzyme is a glucose isomerase (d‐xylose aldose‐ketose‐isomerase; EC 5.3.1.5) produced with a non‐genetically modified Streptomyces murinus strain NZYM‐GA by Novozymes A/S. The glucose isomerase is intended only to be used in an immobilised form in glucose isomerisation for the production of high fructose syrups. Residual amounts of total organic solids are removed by the purification steps applied during the production of high fructose syrups using the immobilised enzyme; consequently, dietary exposure was not calculated. Genotoxicity tests did not raise a safety concern. Similarity of the amino acid sequence to those of known allergens was searched and no match was found. The Panel considered that, under the intended conditions of use, the risk of allergic sensitisation and elicitation reactions by dietary exposure cannot be excluded, but the likelihood to occur is considered to be low. Based on the data provided, the immobilisation process and the removal of total organic solids during the production of high fructose syrups, the Panel concluded that this food enzyme does not give rise to safety concerns under the intended conditions of use.

Chemical Compositions, Antioxidant and Antimicrobial Activities of the Essential Oil and Extracts of Lamiaceae Family (Ocimum basilicum and Thymbra spicata) from Turkey

Lamiaceae has numerous proven biological properties. Our aim was to investigate the antioxidant and antimicrobial activities and chemical composition of essential oil and extracts of Ocimum basilicum and Thymbra spicata . For this purpose, we used four Gram-positive ( Staphylococcus aureus, Streptomyces murinus, Micrococcus luteus, Bacillus subtilis ), four Gram-negative ( Klebsiella pneumoniae , Pseudomonas aeruginosa , Yersina enterocolitica , Proteus vulgaris ), a yeast ( Candida albicans ) and a mold ( Aspergilus niger ). Essential oil and the extracts of Thymbra spicata have the most effective and significant activity against the bacteria, yeast and mold. Antioxidant activity of the Thymbra spicata was higher than Ocimum basilicum . Phenolic compounds have good properties like antioxidants acting as reducing agent, hydrogen donors and singlet oxygen quenchers. Fourteen phenolic compounds were analyzed and some phenolics were detected in Ocimum basilicum and Thymbra spicata. These results suggest that Lamiaceae is rich in phenolic compounds and has antimicrobial and antioxidant properties as well. Therefore, it can be a useful herbal source in food and drug industries.

Combination use of ultrasound irradiation and ionic liquid in enzymatic isomerization of glucose to fructose

The synthetic effect of the combination use of ultrasound irradiation (UI) and ionic liquid (IL) on improving enzyme activity was studied when they were employed in isomerization of glucose to fructose by immobilized glucose isomerase (IGI, produced from streptomyces murinus and immobilized on silica). Both of UI and IL [EMIM][Cl], which was screened as the best medium for this reaction, were found to increase the enzyme activity in isomerization reaction. And a further increase of enzyme activity was observed by combination use of UI and IL. A systematic screening and optimization of the reaction parameters in ILs under UI on the IGI activity were performed. Under the optimum reaction conditions, 45.3% yield of fructose was achieved in 10h under UI in [EMIM][Cl], compared to only 41.5% yield under stirring in [EMIM][Cl], 44.2% under UI without [EMIM][Cl] and 38.9% under stirring without [EMIM][Cl] in 12h, respectively. High thermal stability and reusability of IGI was also observed under UI in [EMIM][Cl]. These results indicated that the combination use of UI and IL might be a fast and efficient method for enzymatic isomerization of glucose to fructose.

Identification of Streptomyces sp. KH29, which produces an antibiotic substance processing an inhibitory activity against multidrug-resistant Acinetobacter baumannii.

The Actinomycete strain KH29 is antagonistic to the multidrug-resistant Acinetobacter baumannii. Based on the diaminopimelic acid (DAP) type, and the morphological and physiological characteristics observed through the use of scanning electron microscopy (SEM), KH29 was confirmed as belonging to the genus Streptomyces. By way of its noted 16S rDNA nucleotide sequences, KH29 was found to have a relationship with Streptomyces cinnamonensis. The production of an antibiotic from this strain was found to be most favorable when cultured with glucose, polypeptone, and yeast extract (PY) medium for 6 days at 27 degrees C. The antibiotic produced was identified, through comparisons with reported spectral data including MS and NMR as a cyclo(L-tryptophanyl-L-tryptophanyl). Cyclo(L-Trp-L-Trp), from the PY cultures of KH29, was seen to be highly effective against 41 of 49 multidrugresistant Acinetobacter baumannii. Furthermore, cyclo(LTrp- L-Trp) had antimicrobial activity against Bacillus subtilis, Micrococcus luteus, Staphylococcus aureus, Saccharomyces cerevisiae, Aspergillus niger, and Candida albicans, However, it was ineffective against Streptomyces murinus.

Plectosporium tabacinum Root Rot Disease of White Lupine (Lupinus termis Forsk.) and its Biological Control by Streptomyces Species

Plectosporium tabacinum root rot disease of white lupine is reported for the first time in Cairo Governorate provinces. Symptoms of the disease appeared on young seedlings as stunting, yellowing and wilting of the foliage. Rotted roots were first became light brown and the lesions progressively extended over the whole root system and became dark brown. Plants died when the whole root system had become infected. For successful biological control of the disease 70 rhizosphere actinomycetes were isolated by the use of normal standard isolation techniques. Three of these isolates were found to be strongly antagonistic against P. tabacinum in vitro. They also significantly reduced the incidence of white lupine root rot disease in soil infested with P. tabacinum in greenhouse trials. The three actinomycete isolates were identified as Streptomyces cyanoviridis, Streptomyces murinus and Streptomyces griseoplanus.

DNA relatedness among the Streptomyces fulvissimus and Streptomyces griseoviridis phenotypic cluster groups

As a continuation of an ongoing study of DNA relatedness among red-spored streptomycetes, the homology between the four species comprising the Streptomyces fulvissimus phenotypic cluster (S. fulvissimus, Streptomyces aureoverticillatus, Streptomyces longispororuber and Streptomyces spectabilis) and the four species comprising the Streptomyces griseoviridis phenotypic cluster (S. griseoviridis, Streptomyces chryseus, Streptomyces daghestonicus and Streptomyces murinus) was measured spectrophotometrically from C0t05 determinations. All strains were also compared to 12 strains representing previously determined DNA-relatedness clusters in the Streptomyces lavendulae phenotypic cluster, including the type strain NRRL B-1230T. The strains segregated into 15 cluster groups at DNA relatedness <80%, including 10 single-membered clusters. S. griseoviridis and S. daghestonicus were synonymous, as were S. chryseus and S. longispororuber. S. spectabilis exhibited species-level homology with strain NRRL B-2402, which had been received as S. lavendulae. S. aureoverticillatus exhibited significant DNA relatedness to Streptomyces flavotricini. None of the strains from the S. fulvissimus or S. griseoviridis clusters exhibited significant homology to the type strain of S. lavendulae.

A New Immobilized Glucose Isomerase with High Productivity Produced by a Strain of Streptomyces murinus

AbstractThe properties of a new immobilized glucose isomerase, produced by a selected strain of Streptomyces murinus, are described. The major advantages of the new immobilized enzyme are a productivity of more than 10,000 kg syrup dry substance per kg enzyme under optimal industrial conditions, increased activity and a very low syrup by‐product formation. The influence of process parameters (temperature, pH and feed syrup additives) on activity and stability is discussed based on laboratory and industrial plant data.