ContextStraw retention could reduce phosphorus (P) application without decreasing seedcotton yield but related physiological mechanisms were unclear. Cotton root is the first organ to sense the changes in soil environment, and its growth and development, especially carbohydrate metabolism, significantly affected the formation of seedcotton yield. Therefore, it is necessary to explore the responses of cotton root carbohydrate metabolism to straw retention combined with P application. ObjectiveThis study was to investigate the effects of straw retention combined with P application on root carbohydrate metabolism and its relationship with seedcotton yield. MethodsA field experiment (2020–2022) was conducted to evaluate the changes in seedcotton yield, cotton canopy apparent photosynthesis rate (CAP), biomass, root productivity, root carbohydrate contents and related enzyme activities under different straw management [removal (S0), retention (S1)] and P rates (0, 100, 200 kg P2O5 ha−1). ResultsStraw retention and P application both increased seedcotton yield and had a significant interaction effect on it. In the 5th-7th year of straw retention, straw retention reduced 24 %-26 % P application to reach a similar yield of S0 with 100 kg P2O5 ha−1. Analyzing the reasons: (1) Straw retention combined with P application increased cotton CAP, providing adequate assimilates for cotton development; (2) Straw retention combined with P application promoted the utilization of root carbohydrates, thereby increasing root productivity and seedcotton yield. Specifically, compared with S0 without P, S1 combined with P application increased the enzyme activities related to carbohydrate metabolism, especially sucrose synthase (7.6 %-59.4 %) and acid invertase (3.9 %-58.6 %), which reduced sucrose (3.3 %-32.2 %) and starch (4.3 %-28.7 %) contents at the peak boll setting stage. Efficient utilization of sucrose and starch enhanced root productivity, the ratio of root to shoot (R/S) reduced by 2.7 %-21.6 %, while the boll loading of root system (BLR) and boll capacity of root system (BCR) increased by 0.6 %-39.2 % and 3.1 %-50.6 % at the boll opening stage, respectively, favoring the formation of seedcotton yield. Furthermore, when the R/S, BLR, and BCR reached 0.12, 0.81 boll g−1, and 4.33 g g−1, cotton harvested the maximum theoretical yield of 3780, 3774, and 4069 kg ha−1, respectively. ConclusionsStraw retention combined with P application increased root productivity and seedcotton yield by promoting the utilization of root carbohydrates. ImplicationsThis study revealed the internal mechanism for straw retention combined with P application to affect seedcotton yield from the angle of root carbohydrate metabolism and provided a theoretical basis for rationally reducing P fertilizer under straw retention.