Strains Of Plesiomonas Shigelloides Research Articles

Comparative analysis of three plasmids from Plesiomonas shigelloides strain MS-17-188 and their role in antimicrobial resistance.

Plesiomonas shigelloides strain MS-17-188 was isolated from a deceased catfish from East Mississippi and showed resistance to florfenicol, tetracyclines and a sulphonamide. WGS of strain MS-17-188 revealed three plasmids (pPSMS-171881, pPSMS-171882 and pPSMS-171883). To accurately determine the impact of three plasmids found in P. shigelloides strain MS-17-188 on the dissemination of antibiotic resistance genes and to provide insights into the molecular structure of these plasmids. The genetic features of these plasmids in terms of genes associated with antimicrobial resistance (AMR), virulence, transfer, maintenance and replication were identified using bioinformatic tools. Additionally, we investigated the in vitro mobilization and stability of plasmid-mediated resistance. The Comprehensive Antibiotic Resistance Database and Virulence Factors Database were used to detect the AMR genes and virulence genes of P. shigelloides plasmids. Moreover, plasmid mobility was evaluated by a filter-mating assay using strain MS-17-188 as a donor and azide-resistant Escherichia coli J53 as a recipient strain. A stability experiment was conducted to explore the persistence of plasmid-mediated antibiotic resistance in strain MS-17-188 in the absence and presence of selection. pPSMS-171881 harboured multidrug efflux complex (adeF) and two genes responsible for arsenic resistance (arsB and arsC). pPSMS-171882 had a region of 7085 bp encoding type IV secretion system proteins. pPSMS-171883 carried the tetracycline resistance genes tet(A) and tet(R), and a phenicol resistance gene (floR), which were flanked by two transposable elements and mobilization proteins, suggesting that there is a conjugative mechanism by which this plasmid can be mobilized. Results from the stability experiment indicated that pPSMS-171883 is lost over time in the absence of selective pressure. Moreover, pPSMS-171883 is more stable in P. shigelloides at growth temperatures of 30°C and 37°C compared with 40°C and 43°C. After intraperitoneal injection in catfish, P. shigelloides strain MS-17-188 resulted in no mortalities. This is the first study to report plasmid-mediated AMR in Plesiomonas isolated from cultured fish, which needs continued monitoring. This study will provide an understanding of the genetic mechanisms of AMR and virulence of P. shigelloides.

Circumventing aglycon transfer en route to the synthesis of pentasaccharide thioglycoside donor for the chain extension of Plesiomonas shigelloides strain 302-73 (serotype O1) repeating unit

Herein we report a chemical synthesis of a pentasaccharide thioglycoside repeating unit of Plesiomonas shigelloides Strain 302-73 (Serotype O1), as a chain extension unit. In our synthetic endeavor we encountered multiple aglycon transfer reactions during glycosylations. This problem was obviated by employing a PMP group as a transient protecting group.

Draft Genome Sequence of Plesiomonas shigelloides Strain PI-19, Isolated from the Intestine of Pufferfish (Tetraodon cutcutia).

ABSTRACTWe report the draft genome sequence of Plesiomonas shigelloides strain PI-19, which was isolated from the intestine of freshwater pufferfish. The genome of strain PI-19 contain 3,146 protein-coding sequences and harbors virulence genes associated with pathogenicity.

Total Synthesis of the All-Rare Sugar-Containing Pentasaccharide Repeating Unit of the O-Polysaccharide of Plesiomonas shigelloides Strain 302-73 (Serotype O1).

First total synthesis of the conjugation-ready pentasaccharide repeating unit of Plesiomonas shigelloides strain 302-73 (serotype O1) is reported. The complex target pentasaccharide is composed of all-rare amino sugars such as orthogonally functionalized d-bacillosamine, l-fucosamine, and l-pneumosamine linked through four consecutive α-linkages. The poor nucleophilicity of axial 4-OH of l-fucosamine and stereoselective glycosylations are the key challenges in the total synthesis, which was completed via a longest linear sequence of 27 steps in 3% overall yield.

Effects of a Bioprocessed Soybean Meal Ingredient on the Intestinal Microbiota of Hybrid Striped Bass, Morone chrysops x M. saxatilis.

The hybrid striped bass (Morone chrysops x M. saxatilis) is a carnivorous species and a major product of US aquaculture. To reduce costs and improve resource sustainability, traditional ingredients used in fish diets are becoming more broadly replaced by plant-based products; however, plant meals can be problematic for carnivorous fish. Bioprocessing has improved nutritional quality and allowed higher inclusions in fish diets, but these could potentially affect other systems such as the gut microbiome. In this context, the effects of bioprocessed soybean meal on the intestinal bacterial composition in hybrid striped bass were investigated. Using high-throughput sequencing of amplicons targeting the V1–V3 region of the 16S rRNA gene, no significant difference in bacterial composition was observed between fish fed a control diet, and fish fed a diet with the base bioprocessed soybean meal. The prominent Operational Taxonomic Unit (OTU) in these samples was predicted to be a novel species affiliated to Peptostreptococcaceae. In contrast, the intestinal bacterial communities of fish fed bioprocessed soybean meal that had been further modified after fermentation exhibited lower alpha diversity (p < 0.05), as well as distinct and more varied composition patterns, with OTUs predicted to be strains of Lactococcus lactis, Plesiomonas shigelloides, or Ralstonia pickettii being the most dominant. Together, these results suggest that compounds in bioprocessed soybean meal can affect intestinal bacterial communities in hybrid striped bass.

183 Effects of Protein Supplementation on the Gut Bacterial Community Composition of Hybrid Striped Bass, Morone Chrysops X M. Saxatilis

Abstract Plant-based protein ingredients have become an attractive substitute for traditional animal sources in the aquaculture feed industry. However, inclusion in carnivorous fish diets is limited due to reduced digestibility, presence of anti-nutritional factors, and increased risk of digestive tract inflammation. To gain further insight on the adaptation of the fish digestive tract environment to plant-based protein sources, intestinal bacterial communities from Hybrid Striped Bass, Morone chrysops x M. saxatilis, fed diets supplemented with different protein sources were compared. Data were generated by Illumina MiSeq 2X300 sequencing of PCR generated amplicons targeting the V1–V3 regions of the 16S rRNA gene. A comparative analysis using the non-parametric Kruskal-Wallis test identified 17 highly represented species-level Operational Taxonomic Units (OTUs) that differed in abundance across dietary treatments (P &amp;lt; 0.05). Notably, OTU SD_McMs-0001 was at its highest abundance in samples from individuals fed poultry-fishmeal (PFM; 47.61% ± 0.92%) and plant protein-based (PP; 43.13% ± 1.76%) diets, while it was found in much lower abundance in the non-supplemented control diet samples (B; 4.29% ± 0.92%). It was predicted to be a novel species of the family Peptostreptococcaceae based on its limited 16S rRNA gene sequence identity to its closest valid relative (Peptostreptococcus russellii, 91%). In contrast, three Proteobacteria-affiliated OTUs (SD_McMs-0002, SD_McMs-0003, and SD_McMs-0004) were most highly represented in B diet samples, with averages of 30.28%, 27.22%, and 13.54%, respectively. They were in much lower abundance in the PFM and PP samples, with averages ranging between 0.18% and 4.82%, respectively. Based on 16S rRNA sequence comparisons, they were predicted to be strains of Plesiomonas shigelloides (99%), Ralstonia pickettii (99%) and Sphingomonas elodea (99%), respectively. These results indicate that protein supplementation affects gut bacterial community composition of Hybrid Striped Bass, but that the type of protein used has minimal or no detectable impact.

Taxonomic characteristics of micro-organisms isolated from the Baikal seal

The relevance of the ecological problem of the mass death of the Baikal seal (Pusa sibirica Gm.) forces researchers to establish causes of this phenomenon. The article presents the results of microbiological studies of swabs isolated from the nasal, oral cavities and rectum. The taxonomic characteristics of microorganisms and their virulence were studied. 14 Baikal seals found in the nerpinaria of Listvyanka were tudied. It was established that in the seal there are the following microorganisms: Clostridium perfringens, Escherichia coli, Enterococcus faecalis, Staphylococcus warneri, Pseudomona aeruginosa, Staphylococcus epidermidis, Staphylococcus aureus, Proteus hauseri, Proteus vulgaris bellisella, Proteus migarisella, rabitemorganii, Psychrobactersanguinis, Enterobacter cloacae. When studying the virulence of microorganisms, it was found that 58% of the strains do not cause the death of laboratory animals, they are mainly the representatives of opportunistic microflora. 42% of the strain were pathogenic, of which two strains of Plesi omonas shigelloides and 42 strains of Clostridium perfringens were identified.

Molecular Characterization, Intra-Species Diversity and Abundance of Freshwater Plesiomonas shigelloides Isolates.

Molecular signatures of Plesiomonas shigelloides strain specific to pathogenic and nonpathogenic variants are not well established till present. There is a need for intra-species barcoding of P. shigelloides to aid infection control. This study aims at characterizing and assessing intra-species diversity and abundance of P. shigelloides isolated from three freshwaters in the Eastern Cape Province. The study used a Plesiomonas-specific PCR to characterize the isolates. Intra-species (dis)similarities were assessed using ERIC-PCR and (GTG)5-PCR techniques. The DNA fingerprints produced were electrophoresed, digitized, and documented via computer-assisted pattern analysis. The fingerprints were analyzed using neighbor-joining clustering (NJC) based on Euclidean similarity index. Results revealed 80%, 83.64%, and 80% of the water samples from Tyhume, Kat, and Kubusie rivers, respectively, positive for P. shigelloides isolation. The prevalence of P. shigelloides from sites ranged from 13.5% to 88.9%. NJC delineated 48 isolates to 8 clades (ERIC-fingerprints) and 34 isolates into 7 clades ((GTG)5-fingerprints). The relative abundance of unique strains ranged from 6.3% to 22.9% via the two methods. Both fingerprinting approaches have strain-differentiating potential for P. shigelloides, however ERIC-PCR possessed higher resolution (D = 37.46) advantage over (GTG)5-PCR (D = 29.64). In conclusion, the study achieved intra-species diversity and abundance of P. shigelloides from aquatic milieu and provide further opportunity for intra-species-specific barcoding.

Putative virulence factors of Plesiomonas shigelloides.

Plesiomonas shigelloides is a Gram-negative rod-shaped bacterium which has been isolated from humans, animals and the environment. It has been associated with diarrhoeal disease in humans and various epizootic diseases in animals. In this study P. shigelloides strains were isolated from the faecal material of a captive Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis; YFP) living in semi-natural conditions in China. Plesiomonas shigelloides strain EE2 was subjected to whole genome sequencing. The draft genome was then compared to the genome sequences of ten other P. shigelloides isolates using the Pathosystems Resource Integration Center pipeline. In addition to several virulence factors which have been previously reported, we are proposing new candidate virulence factors such as a repeats-in-toxin protein, lysophospholipase, a twin-arginine translocation system and the type VI secretion effector Phospholipase A1.

Draft Genome Sequence of a Tetracycline-Resistant Plesiomonas shigelloides Strain Isolated from Aquaculture-Reared Tilapia.

We hereby present the 3.7-Mb draft genome sequence of Plesiomonas shigelloides strain FM82, isolated from a tilapia (Oreochromis niloticus) reared in a fish farm in Rio de Janeiro, Brazil. P. shigelloides strain FM82 carries antimicrobial resistance, biofilm, and CRISPR-related genes.

Detection and characterization of the ferric uptake regulator (fur) gene in Plesiomonas shigelloides.

Significance and Impact of the Study: This study provides evidence of the presence of a conserved fur gene in strains of Plesiomonas shigelloides. Expression of this gene is higher when the micro-organism is cultured under iron-restricted conditions. The study provides clues to understand the role of iron in the regulation of important activities of P. shigelloides.

Adsorption of aquatic Cd2+ using a combination of bacteria and modified carbon fiber

Batch experiments were conducted to investigate the capacity and mechanisms for adsorbing Cd2+ from aqueous solutions by the composite material. The composite material was manufactured with Plesiomonas shigelloides strain H5 and modified polyacrylonitrile-based carbon fiber. Experimental results showed that the surface areas of modified polyacrylonitrile-based carbon fiber increased by 58.54% and pore width increased by 40.19% compared with unmodified polyacrylonitrile-based carbon fiber. Boehm’s titration results show the surface acid sites of composite material were increased by 712% compared with unmodified polyacrylonitrile-based carbon fiber. The field emission scanning electron microscope results show P. shigelloides H5 can be grown on the surface of modified polyacrylonitrile-based carbon fiber closely. The equilibrium removal rate and sorption quantity of composite material were 71.56% and 7.126 mg g−1, respectively. With the pH value of aqueous solution increased, the removal rate of Cd2+ ions was also increased, but the change of temperature and ionic strength had no significant effect on the removal rate. Furthermore, the results showed the whole sorption process was a good fit to Lagergren pseudo-second-order model and Freundlich isotherms model. Therefore, the results infer that there was a heterogeneous distribution of active sites, and then the sorption process was chemical adsorption and multilayer adsorption. In a word, microbial composite carbon fiber material can adsorb Cd2+ ions from aqueous solution effectively, which might be helpful in wastewater treatment in the future.

Erratum: Xue, C., et al. Characterization and Sorptivity of the Plesiomonas shigelloides Strain and Its Potential Use to Remove Cd2+ from Wastewater. Water 2016, 8, 241

The authors wish to make the following corrections to their paper [1].[...]

Prevalence of Pathogenic Bacteria in Open Drains and its Public Health Implications for Water Resources in Port Harcourt, Southern Nigeria

Wastewater and sediment samples from the open drains along the Ntanwogba creek were collected from five (5) different sites and analyzed for the presence of pathogenic bacteria. Microbiological studies involved the isolation and characterization of isolates by assessing the gene/nucleotide structure of the bacterial community through the polymerase chain reaction study. Results of the analysis show that the following bacteria were identified from the samples. The gram-negative bacteria include, Proteus mirabilis M18, Klebsiella pneumoniae strain DSM 30104, Burkolderia multivorans strain AUO, Plesiomonas shigelloides strain 187-907R, Pseudomonas fluorescens strain PF1, Esherichia coli, Enterobacter asburiae strain TYP8, Proteus mirabilis M19, Pseudomonas nitroreducens strain LBQSKN1, while gram-positive bacterium was Bacillus ginsengisoli strain A1Cr. Results obtained showed that both wastewater and sediment samples had higher microbial counts from the various sampling sites. Excess untreated wastewater can run off or percolate down to groundwater, causing contamination of drinking water supplies with faecal wastes and other pollutants which may contribute significantly to the spread of diseases amongst our population. This shows that the wastewater effluents and the receiving water bodies could pose a potential health risk to the surrounding communities who depend on these water resources for various domestic activities.

Aeromonas and Plesiomonas species from scarlet ibis (Eudocimus ruber) and their environment: monitoring antimicrobial susceptibility and virulence.

The present study aimed at evaluating the role of captive scarlet ibises (Eudocimus ruber) and their environment as reservoirs of Aeromonas spp. and Plesiomonas spp., and analyzing the in vitro antimicrobial susceptibility and virulence of the recovered bacterial isolates. Thus, non-lactose and weak-lactose fermenting, oxidase positive Gram-negative bacilli were recovered from cloacal samples (n=30) of scarlet ibises kept in a conservational facility and from water samples (n=30) from their environment. Then, the antimicrobial susceptibility, hemolytic activity and biofilm production of the recovered Aeromonas spp. and Plesiomonas shigelloides strains were assessed. In addition, the virulence-associated genes of Aeromonas spp. were detected. Ten Aeromonas veronii bv. sobria, 2 Aeromonas hydrophila complex and 10 P. shigelloides were recovered. Intermediate susceptibility to piperacillin-tazobactam and cefepime was observed in 2 Aeromonas spp. and 1 P. shigelloides, respectively, and resistance to gentamicin was observed in 4 P. shigelloides. The automated susceptibility analysis revealed resistance to piperacillin-tazobactam and meropenem among Aeromonas spp. and intermediate susceptibility to gentamicin among P. shigelloides. All Aeromonas isolates presented hemolytic activity, while 3 P. shigelloides were non-hemolytic. All Aeromonas spp. and 3/10 P. shigelloides were biofilm-producers, at 28°C, while 10 Aeromonas spp. and 6/10 P. shigelloides produced biofilms, at 37°C. The most prevalent virulence genes of Aeromonas spp. were asa1 and ascV. Scarlet ibises and their environment harbour potentially pathogenic bacteria, thus requiring monitoring and measures to prevent contamination of humans and other animals.

Characterization and Sorptivity of the Plesiomonas shigelloides Strain and Its Potential Use to Remove Cd2+ from Wastewater

In this study, the ability of adsorbing Cd2+ ions of Plesiomonas shigelloides was discovered. Herein, the method and mechanisms of adsorbing Cd2+ ions from aqueous solutions is discussed. The cadmium-resistant bacterium was collected from the sediment of Harbin section of the Songhua River in China, and then isolated, identified and characterized. The isolated strain was identified as Plesiomonas shigelloides H5 on the basis of morphological and biochemical characteristics, the sequencing of the 16SrDNA gene, and phylogeny analysis. P. shigelloides H5 was Gram-negative and bacillus. Maximum tolerance concentration (MTC) of the strain was 150 mg/L. The maximum adsorption rate and adsorption amounts was 42.71% ± 0.88% and 106.775 ± 2.325 mg/g when dried biomass was presented in a 50 mg/L Cd2+ solution. Dried biomass was in accordance with Lagergren pseudo-second-order models. A field emission scanning electron microscope (FE-SEM), an energy dispersive X-ray spectrometer (EDX), and Fourier transform infrared spectroscopy (FTIR) analyses were applied to identify the surface morphology and functional groups. Transmission electron microscope (TEM) results showed that Cd2+ was also absorbed into cells to form precipitates. The results revealed that the surface functional groups of P. shigelloides H5 can bind to heavy metal ions. To sum up, the ability of adsorbing cadmium ions of Plesiomonas shigelloides was discovered, which might be helpful in wastewater treatment in the future.

The novel structure of the core oligosaccharide backbone of the lipopolysaccharide from the Plesiomonas shigelloides strain CNCTC 80/89 (serotype O13)

The new structure of the core oligosaccharide of Plesiomonas shigelloides CNCTC 80/89 (serotype O13) lipopolysaccharide has been investigated by chemical methods, 1H and 13C NMR spectroscopy and matrix-assisted laser-desorption/ionization time of flight (MALDI-TOF). It was concluded that the core oligosaccharide of P. shigelloides CNCTC 80/89 is a nonasaccharide with the following structure: [Display omitted] The position of glycine was determined by MALDI-TOF MS/MS analyses.

Chemical synthesis of the tetrasaccharide repeating unit of the O-antigenic polysaccharide from Plesiomonas shigelloides strain AM36565

Chemical synthesis of the tetrasaccharide repeating unit of the O-antigenic polysaccharide from Plesiomonas shigelloides strain AM36565 is reported. Glycosylations between suitably protected monosaccharide synthons were achieved by the activation of thioglycosides in the presence of H2SO4–silica in conjunction with N-iodosuccinimide. The glycosylations accomplished were highly stereoselective and afforded the desired products in good to excellent yields.

Structural studies of the O-antigenic polysaccharide from Plesiomonas shigelloides strain AM36565

The structure of the repeating unit of the O-antigenic polysaccharide from Plesiomonas shigelloides strain AM36565 has been determined. Component analysis and 1H and 13C NMR spectroscopy experiments were employed to elucidate the structure. Inter-residue correlations were determined by 1H, 13C heteronuclear multiple-bond correlation, 1H, 1H-NOESY, and 1H, 13C-HSQC– 1H, 1H-NOESY experiments. The O-antigen polysaccharide is composed of repeating units with the following structure: →3)-α- l-Rha p-(1→2)-α- l-Rha p-(1→4)[β- d-Gal pNAc-(1→3)]-α- d-Glc pNAc-(1→, in which the monosaccharide side-chain substitutes the backbone in half of the repeating units. A matrix-assisted laser desorption/ionization mass spectrometry experiment suggested that the polysaccharide consists of two regions, one with tetrasaccharide repeating units and one with trisaccharide repeating units.

Molecular evidence of Plesiomonas shigelloides as a possible zoonotic agent

The most frequently used method for establishing epidemiological relationships between Plesiomonas shigelloides strains is O:H serotyping. However, a number of strains are not serotypeable and isolates from diverse sources can display the same serovar. Moreover, since the zoonotic nature of Plesiomonas has been suggested and this hypothesis is based on the identical serovars found in animals and humans, we intend to use four DNA-based techniques: random amplified polymorphic DNA-PCR, enterobacterial repetitive intergenic consensus-PCR, repetitive extragenic palindromic-PCR, and pulsed field gel electrophoresis in order to screen 24 strains belonging to nine O:H serovars isolated from humans, animals, and the environment. In general, P. shigelloides showed a high genetic heterogeneity. Three pairs of strains, each containing a human and an animal isolate, displayed similar genotypes. This is the first report that provides molecular evidence that P. shigelloides may be zoonotic.