Steric Protection Research Articles

Sterically Hindered Derivatives of Pentacene and Octafluoropentacene.

6,13-Diethynylpentacene derivatives with sterically bulky substituents (Tr*, tris(3,5-di-tert-butylphenyl)methyl groups) appended to the ethynyl moieties at the 6- and 13-positions have been synthesized, as well as derivatives with electron-withdrawing fluorine groups on the 1,2,3,4,8,9,10,11-positions. These molecules are designed to investigate relationships between steric and electronic effects on the stability of pentacene toward endoperoxide formation via reaction with photosensitized oxygen in solution under ambient light (i. e., 'laboratory' conditions). It is evident from the study that stabilization through changes to the electronic characteristics of pentacene are more effective than the incorporation of sterically bulky groups at the acetylenic termini. Selected pentacene derivatives have been made into binary, amorphous films with the fullerene derivative PCBM to investigate the stability imparted by substituents against cycloaddition reactions. Overall, the introduction of steric protection through the incorporation of Tr* groups is not an efficient strategy for enhancing the persistence of pentacenes. Stabilization through fluorination proves successful for extending the lifetime of the pentacene derivatives by an order of magnitude in solution. Notably, the persistence of pentacene derivatives in solution can also be enhanced through the use of ethereal solvents stabilized with butylated hydroxy toluene (BHT) and/or an increased number of trialkylsilyl groups as substituents.

Air-stable, well-defined palladium–BIAN–NHC chloro dimer: Highly efficient N-Heterocyclic carbene (NHC) catalyst platform for Buchwald–Hartwig C–N cross-coupling reactions

Buchwald-Hartwig amination has become the fundamental method for constructing molecular architectures throughout chemical research, including the synthesis of pharmaceutical agents, natural products, fine chemicals, and advanced materials. Herein, we report air-stable, well-defined palladium–BIAN–NHC chloro dimer, [Pd(BIAN–NHC)(μ-Cl)Cl]2, for Buchwald-Hartwig C–N cross-coupling reactions of aryl halides. This rapidly activating catalyst framework merges the reactive properties of palladium chloro dimers, [Pd(NHC)(μ-Cl)Cl]2, with the structural features of acenaphthoimidazol-2-ylidenes. [Pd(BIAN–NHC)(μ-Cl)Cl]2 is the most reactive Pd(II)–NHC precatalyst to date, undergoing fast activation under both inert atmosphere and aerobic conditions. The catalyst shows an excellent reactivity in Buchwald-Hartwig amination of aryl halides (59 examples), including challenging substrates, diamination and direct functionalization of pharmaceuticals. The steric protection enables high reactivity under both inert atmosphere and aerobic conditions. [Pd(BIAN–IPr)(μ-Cl)Cl]2 should be routinely utilized for the synthesis of C–N bonds to make valuable amines, where it replaces the most commonly deployed at present IPr (IPr = 1,3-bis(2,6-isopropyl)imidazol-2-ylidene).

Gold(I) Catalysis in Alkyne-Alkene Reactions: A Systematic Exploration through Molecular Electrostatic Potential Analysis.

Gold catalysis enables selective chemical transformations with catalytic activity tunable through ligand selection. This study uses the density functional theory (DFT) to explore the impact of phosphine ligands (PR3) on gold(I)-catalyzed alkyne-alkene cyclobutene formation. We analyze the following key steps: (i) PR3-Au+ complexation, (ii) alkyne binding, (iii) alkene binding, (iv) C-C coupling transition state, (v) cyclobutene formation transition state, and (vi) cyclobutene dissociation. Molecular electrostatic potential (MESP) analysis provided a deeper understanding of electronic effects and revealed a strong correlation between the change in MESP at the gold nucleus (ΔNVAu+) upon complex formation with various ligands and the corresponding complexation energy, as well as between the change in MESP at the alkyne carbon (ΔVC) and the C-C coupling step activation barrier. This establishes MESP as a powerful tool for understanding ligand influence on catalysis. Our findings suggest that electron-donating phosphine ligands, combined with electron-withdrawing alkyne substituents, enhance catalyst turnover, promote cyclobutene product dissociation from the gold(I) complex, and facilitate catalyst regeneration. Solvent effects also play a crucial role. Bulky XPhos, JohnPhos, and CyJohnPhos ligands enhance gold(I) catalysis via steric protection, electron donation, and catalyst regeneration efficiency. In conclusion, this study provides insights into ligand effects in gold(I)-catalyzed cyclobutene formation, guiding future catalyst design.

Coordination Chemistry of Calix[3]Pyrrole-Related Macrocycles

Calix[3]pyrrole is a ring-contracted porphyrinogen-like macrocycle in which three pyrrole units are linked by three sp3-carbon atoms at the a-positions. While synthetic routes to calix[3]pyrrole and its furan and thiophene derivatives have been established using oligoketone precursors,[1–3] their coordination chemistry remains fully unexplored. Here, the author reports the direct macrocyclization synthesis and metal complexation properties of novel thiazole-containing calix[3]pyrrole analogues that exhibit better metal chelation than that of calix[3]pyrrole.Treatment of calix[3]pyrrole (1) with n-butyl lithium (4 eq.) resulted in the deprotonation of all the NH protons to generate a tridentate trianionic ligand. Successive reaction with BBr3 furnished a boron(III)-complex 2 in 25% isolated yield. However, attempts to synthesize stable complexes with other metal ions were unsuccessful. The obtained boron complex 2 were unusually stable towards acids; even in pure trifluoroacetic acid (TFA) or methanesulfonic acid, no deboronation was observed, instead, protonation at a pyrrole carbon atom was detected by NMR spectroscopy.In order to generate isolable metal complexes with calix[3]pyrrole-related macrocycles, we have designed calix[1]pyrrole[2]thiazole (4). Calix[1]furan[2]thiazole (3), a precursor of 4, was synthesized by direct macrocyclization between bis(a-bromoketone) and 2,2-dimethylpropanebis(thioamide) in 60% yield. While calix[3]pyrrole (1)undergoes a strain-induced ring expansion reaction to give calix[6]pyrrole under acidic conditions, less strained 3 was stable in TFA, thus its furan moiety was hydrolyzed to a diketone moiety. Further Paal–Knorr pyrrole formation reaction led to the formation of 4 in 78% yield.When macrocycle 4 was mixed with Et2Zn, monoethyl zinc complex 5 was formed in 72% yield. Single crystal X-ray analysis revealed that 4 adopted a C s-symmetric cone conformation to behave as a monoanionic tridentate ligand. Due to the steric protection of the ethyl zinc center by meso-methyl groups, organozinc complex 5 was stable in the presence of excess water or alcohol at room temperature.Complexation of 4 with Pd(MeCN)4(BF4)2 afforded cationic palladium complex 6 in which macrocycle 4 adopted a partial cone conformation to chelate a Pd2+ ion as a neutral bidentate ligand. Similar complexation behavior was also observed with AgBF4, demonstrating conformational flexibility of macrocycle 4 upon metal complexation. Furthermore, coordination-driven self-assembly was confirmed for Ag+ complex of 4.In this presentation, the detailed synthesis and electronic properties of the metal complexes of calix[3]pyrrole-related macrocycles will be discussed.

Boosting Effect of Sterically Protected Glucosyl Substituents in Formic Acid Dehydrogenation by Iridium(III) 2-Pyridineamidate Catalysts.

[Cp*Ir(R-pica)Cl] (Cp*=pentamethylcyclopentadienyl anion, pica=2-picolineamidate) complexes bearing carbohydrate substituents on the amide nitrogen atom (R=methyl-β-D-gluco-pyranosid-2-yl, 1; methyl-3,4,6-tri-O-acetyl-β-D-glucopyranosid-2-yl, 2) were tested as catalysts for formic acid dehydrogenation in water. TOFMAX values over 12000 h-1 and 50000 h-1 were achieved at 333 K for 1 and 2, respectively, with TON values over 35000 for both catalysts. Comparison with the simpler cyclohexyl-substituted analogue (3) indicated that glucosyl-based complexes are much better performing under the same experimental conditions (TOFMAX=5144 h-1, TON=5000 at pH 2.5 for 3) owing to a lower tendency to isomerize to the less active k2-N,O isomer upon protonation. The 5-fold increase in TOFMAX observed for 2 with respect to 1 is reasonably due to an optimal steric protection by the acetyl substituent, which may prevent unproductive inner-sphere reactivity. These results showcase a powerful strategy for the inhibition of the common deactivation pathways of [Cp*Ir(R-pica)X] catalysts for FA dehydrogenation, paving the way for the development of better performing hydrogen storage systems.

Sterically Crowded Gold Germylene Compounds with Methyl and Hydride Substituents

AbstractThis work explores the combination of sterically crowded low‐valent germanium compounds bearing one or two terphenyl (C6H3‐2,6‐Ar2) substituents with gold fragments, the latter stabilized by crowded phosphines also containing a terphenyl moiety. The steric protection of these motifs has allowed to examine a series of unusual gold‐germylene compounds featuring small hydride and methyl substituents at the germanium site. A gold‐germylene dicationic structure is also reported. The bonding in this series is investigated by computational means, providing understanding for the two‐way transfer of electrons from germanium to gold and vice versa.

En Route to a Molecular Terminal Tin Oxide.

In the pursuit of terminal tin chalcogenides, heteroleptic stannylenes bearing terphenyl- and hexamethyldisilazide ligands were reacted with carbodiimides to yield the respective guanidinato complexes. Further supported by quantum chemical calculations, this revealed that the iso-propyl-substituted derivative provides the maximum steric protection achievable. Oxidation with elemental selenium produced monomeric terminal tin selenides with four-coordinate tin centers. In reactions with N2O as oxygen transfer reagent, silyl migration toward putative terminal tin oxide intermediates gave rise to tin complexes with terminal ─OSiMe3 functionality. To prevent silyl migration, the silyl groups were substituted with cyclohexyl moieties. This analogue exhibited distinctively different reactivities toward selenium and N2O, yielding a 1,2,3,4,5-tetraselenastannolane and chalcogenide-bridged dimeric compounds, respectively.

Steric protection of near-infrared fluorescent dyes for enhanced bioimaging.

Near-fluorescent (NIR) dyes that absorb and emit light in the wavelength range of 650-1700 nm are well-suited for bioimaging due to the improved image contrast and increased penetration of the long-wavelength light through biological tissue. However, the imaging performance of NIR fluorescent dyes is limited by several inherent photophysical and physicochemical properties including, low fluorescence quantum yield, high chemical and photochemical reactivity, propensity to self-aggregate in water, non-specific association with off-target biological sites, and non-optimal pharmacokinetic profiles in living subjects. In principle, all these drawbacks can be alleviated by steric protection which is a structural process that surrounds the fluorophore with bulky groups that block undesired intermolecular interactions. The literature methods to sterically protect a long-wavelength dye can be separated into two general strategies, non-covalent dye encapsulation and covalent steric appendage. Illustrative examples of each method show how steric protection improves bioimaging performance by providing: (a) increased fluorescence brightness, (b) higher fluorophore ground state stability, (c) decreased photobleaching, and (d) superior pharmacokinetic profile. Some sterically protected dyes are commercially available and further success with future systems will require experts in chemistry, microscopy, cell biology, medical imaging, and clinical medicine to work closely as interdisciplinary teams.

Tuning the electronic structure of gold cluster-assembled materials by altering organophosphine ligands.

Superatomic clusters can be assembled to build bulk matter, where the individual characteristics are preserved. The main benefit of these materials over conventional bulk species is the capability to tailor their features by altering the physicochemical identities of individual clusters. Electronic properties of metal clusters can be modified by a protective shell of ligands that attach to the surface and make the whole nanoparticle soluble in organic or aqueous solvents. In the present work, we demonstrate that properly chosen ligands provide not only steric protection from aggregation but also tune the redox activity of metal clusters. We investigate the role of the ligands in electronic structure tunability and ligand-field splitting. Our first-principles calculations agree with the experiments, showing that phosphine-protected gold materials are small gap semiconductors. The obtained bandgaps strongly depend on the ligand used. Hence, using phosphine and organophosphine ligands should be feasible and promising while designing the novel superatom-based materials since the desired range of the bandgap might be achieved (by the proper choice of the ligand).

Homoleptic ruthenium(II) complexes bearing imidazol(in)ium-2-dithiocarboxylate ligands: synthesis, characterization, and redox properties.

Five cationic ruthenium(II) chelates with the generic formula [Ru(S2C·NHC)3](PF6)2 were readily obtained upon cleavage of the [RuCl2(p-cymene)]2 dimer with representative imidazol(in)ium-2-dithiocarboxylate zwitterions (NHC·CS2) in the presence of KPF6. The homoleptic complexes were fully characterized by various analytical techniques and the molecular structure of one of them was determined by single-crystal X-ray diffraction analysis. As expected, it featured an octahedral RuS6 core surrounded by three imidazol(in)ium rings and their nitrogen substituents. The robustness of the Ru-S bonds combined with the chelate effect of the κ2-S,S'-dithiocarboxylate units and the steric protection imparted by bulky 1,3-diarylimidazol(in)ium groups most likely accounted for the outstanding stability of these species in solution. Cyclic voltammetry showed that the five homoleptic complexes featured characteristic waves for a monoelectronic redox process corresponding to the RuIII/RuII couple with E1/2 values ranging between 0.97 and 1.27 V vs. Ag/AgCl. This half-wave potential was clearly dependent on the nature of their ancillary ligands as the evolution of the Ep,ox values roughly paralleled the basicity sequence of the NHCs used to prepare them, in line with the trends observed when monitoring the chemical shifts of the CS2- unit on 13C NMR spectroscopy and the CS2- asymmetric stretching vibration wavenumbers on IR spectroscopy.

Sterically Selective [3 + 3] Cycloaromatization in the On-Surface Synthesis of Nanographenes.

Surface-catalyzed reactions have been used to synthesize carbon nanomaterials with atomically predefined structures. The recent discovery of a gold surface-catalyzed [3 + 3] cycloaromatization of isopropyl substituted arenes has enabled the on-surface synthesis of arylene-phenylene copolymers, where the surface activates the isopropyl substituents to form phenylene rings by intermolecular coupling. However, the resulting polymers suffered from undesired cross-linking when more than two molecules reacted at a single site. Here we show that such cross-links can be prevented through steric protection by attaching the isopropyl groups to larger arene cores. Upon thermal activation of isopropyl-substituted 8,9-dioxa-8a-borabenzo[fg]tetracene on Au(111), cycloaromatization is observed to occur exclusively between the two molecules. The cycloaromatization intermediate formed by the covalent linking of two molecules is prevented from reacting with further molecules by the wide benzotetracene core, resulting in highly selective one-to-one coupling. Our findings extend the versatility of the [3 + 3] cycloaromatization of isopropyl substituents and point toward steric protection as a powerful concept for suppressing competing reaction pathways in on-surface synthesis.

Confinement in Dual-Chain-Locked DNA Origami Nanocages Programs Marker-Responsive Delivery of CRISPR/Cas9 Ribonucleoproteins.

Delivery of CRISPR/Cas9 ribonucleoproteins (RNPs) offers a powerful tool for therapeutic genome editing. However, precise manipulation of CRISPR/Cas9 RNPs to switch the machinery on and off according to diverse disease microenvironments remains challenging. Here, we present dual-chain-locked DNA origami nanocages (DL-DONCs) that can confine Cas9 RNPs in the inner cavity for efficient cargo delivery and dual-marker-responsive genome editing in the specified pathological states. By engineering of ATP or miRNA-21-responsive dsDNAs as chain locks on the DONCs, the permeability of nanocages and accessibility of encapsulated Cas9 RNPs can be finely regulated. The resulting DL-DONCs enabled steric protection of bioactive Cas9 RNPs from premature release and deactivation during transportation while dismounting the dual chain locks in response to molecular triggers after internalization into tumor cells, facilitating the escape of Cas9 RNPs from the confinement for gene editing. Due to the dual-marker-dominated uncaging mechanism, the gene editing efficiency could be exclusively determined by the combined level of ATP and miRNA-21 in the target cellular environment. By targeting the tumor-associated PLK-1 gene, the DL-DONCs-enveloped Cas9 RNPs have demonstrated superior inhibitory effects on the proliferation of tumor cells in vitro and in vivo. The developed DL-DONCs provide a custom-made platform for the precise manipulation of Cas9 RNPs, which can be potentially applied to on-demand gene editing for classified therapy in response to arbitrary disease-associated biomolecules.

Hydroboration of aldehydes with pinacolborane catalyzed by bulky 2‐iminopyrrolyl copper(I) triphenylphosphine complexes

Eight new copper(I) triphenylphosphine complexes of bulky 5‐substituted‐2‐iminopyrrolyl ligands [Cu{κ2N,N′‐5‐R‐NC4H2–2‐C(H) = N(2,6‐iPr2C6H3)}(PPh3)n] (for n = 2: R = 2,6‐Me2C6H3 (1), 3,5‐(CF3)2C6H3 (2); for n = 1: R = 2,4,6‐iPr3C6H2 (3), CPh3 (4), 2,6‐(OMe)2C6H3 (5), 2,4,6‐Ph3C6H2 (6), 2,6‐Me2C6H3 (7), 3,5‐(CF3)2C6H3 (8)) are presently reported. The complexes were prepared in good yields by: (1) the reaction of the previously reported binuclear complexes [Cu{κN,κN'‐5‐R‐NC4H2‐2‐C(H) = N(2,6‐iPr2C6H3)}]2 (D1–D6) with triphenylphosphine (PPh3); (2) the reaction of the respective 5‐R‐2‐iminopyrrolyl potassium salts (KL1–KL3 and KL5) and [Cu(NCMe)2(PPh3)2]BF4; or (3) the abstraction of one PPh3 ligand present in complexes 1 and 2 with one equivalent of tris(pentafluorophenyl)borane (only for complexes 7 and 8, respectively). All complexes were characterized by NMR spectroscopy, elemental analysis and, in selected cases, by single crystal X‐ray diffraction. The single crystal X‐ray diffraction structures of 1, 3, and 5–7 displayed tetrahedral (for 1) and trigonal planar (for 3 and 5–7) coordination geometries. All complexes catalyzed the 1,4‐hydroboration of some α,β‐unsaturated (E)‐2‐enals with pinacolborane (HBPin), with 1,4:1,2‐addition selectivities as high as 29:1, the maximum turnover frequencies being equal to 9.9 min−1, and the 1,4‐hydroboration selectivity being favored by increasing steric protection of the 5‐substituted‐2‐iminopyrrolyl scaffold. Additionally, these complexes also catalyzed the hydroboration of an array of other aldehydes, reaching TOFs as high as 9.9 min−1. A combination of control experiments suggests that the catalyst system operates via a non‐classical copper‐hydride outer sphere route.

Unlocking Some Si‐Centered Reactivity of a 4,4’‐Dichloro‐1,4‐di‐hydro‐1,4‐phosphasiline

AbstractTo establish some steric protection at the P center of a tricyclic 1,4‐dihydro‐1,4‐phosphasiline, the potassium salt of a tricyclic 1,4‐dihydro‐1,4‐phosphasilin‐1‐ide was treated with triphenylmethyl chloride. Subsequently, the two Si‐bound diethylamino groups, were converted to give the SiCl2 derivative using HCl. The Si‐functionality could be used in substitution reactions thus giving Si‐dimethyl and Si‐dimethoxy derivatives. Reduction of the SiCl2 derivative at low temperature gave transient tricyclic silylene which could not be detected by NMR spectroscopy but successfully trapped by 1,3‐butadiene to give a P‐containing spiro‐silolene derivative. DFT studies provide insight into reduction and the silylene formation.

Controlling the Assembly of PdII/Bianthryl‐Based Monomeric and Dimeric Interlocked Cages by Steric Effects

AbstractIn the energy landscape of coordination‐driven self‐assembly processes, the isolation of kinetically formed supramolecular cages has long been identified as a challenging task. This study reports a reliable strategy for the selective isolation of kinetically or thermodynamically preferred stable coordination cages, whose formation depends on the degree of steric protection offered by the exterior side chains. The combination of PdII ions with arc‐shaped 2,2′‐bianthryl‐based ligands that contain different numbers of methoxyethoxy side chains led to the quantitative formation of both kinetically favorable monomeric M2L4 cages and thermodynamically favorable dimeric (M2L4)2 interlocked cages. These assemblies were structurally fully characterized via NMR spectroscopy, mass spectrometry, and single‐crystal X‐ray diffraction analysis. Although the monomeric cages with fewer exterior side chains can reassemble into interlocked cages, the cages with more exterior substituents remain monomeric cages under similar conditions. A computational study revealed that this different behavior is mainly governed by the destabilization of the interlocking assemblies due to the steric repulsion among the side chains on the overcrowded exterior. Furthermore, the kinetically stabilized monomeric M2L4 cages exhibit permanent host abilities toward sulfonate guests, while the cages with lower steric protection undergo dimerization accompanied by guest release.

A crystalline doubly oxidized carbene.

The chemistry of carbon is governed by the octet rule, which refers to its tendency to have eight electrons in its valence shell. However, a few exceptions do exist, for example, the trityl radical (Ph3C∙) (ref. 1) and carbocation (Ph3C+) (ref. 2) with seven and six valence electrons, respectively, and carbenes (R2C:)-two-coordinate octet-defying species with formally six valence electrons3. Carbenes are now powerful tools in chemistry, and have even found applications in material and medicinal sciences4. Can we undress the carbene further by removing its non-bonding electrons? Here we describe the synthesis of a crystalline doubly oxidized carbene (R2C2+), through a two-electron oxidation/oxide-ion abstraction sequence from an electron-rich carbene5. Despite a cumulenic structure and strong delocalization of the positive charges, the dicoordinate carbon centre maintains significant electrophilicity, and possesses two accessible vacant orbitals. A two-electron reduction/deprotonation sequence regenerates the parent carbene, fully consistent with its description as a doubly oxidized carbene. This work demonstrates that the use of bulky strong electron-donor substituents can simultaneously impart electronic stabilization and steric protection to both vacant orbitals on the central carbon atom, paving the way for the isolation of a variety of doubly oxidized carbenes.

Silicon analogues of unsaturated hydrocarbons

The proposed communication demonstrates the efforts of researchers undertaken to prove the existence of fundamental analogies in the chemistry of structurally related compounds of carbon and silicon. Stable silicon analogues of ethylene - silenes or silaethylenes R2C=SiR2 - were obtained in 1979, disilynes R2Si=SiR2 - in 1981, and analogues of ethine or acetylene - disilins RSi≡SiR - only in 2004. Moving towards the intended goals, scientists synthesized a number of unique branched (bulky) organic and organosilicon substituents, attached them to silicon atoms, closed them from the action of oxygen and air moisture, and prevented secondary dimerization (oligomerization) reactions. The created steric protection led to the preparation of kinetically stable unsaturated silicon compounds and made it possible to characterize them by IR, NMR, UV-visible spectroscopy, and X-ray diffraction analysis.

Coordinatively Unsaturated Nickel Nitroxyl Complex: Structure, Physicochemical Properties, and Reactivity toward Dioxygen.

For its important roles in biology, nitrogen monoxide (·NO) has become one of the most studied and fascinating molecules in chemistry. ·NO itself acts as a "noninnocent" or "redox active" ligand to transition metal ions to give metal-NO (M-NO) complexes. Because of this uncertainty due to redox chemistry, the real description of the electronic structure of the M-NO unit requires extensive spectroscopic and theoretical studies. We previously reported the Ni-NO complex with a hindered N3 type ligand [Ni(NO)(L3)] (L3- denotes hydrotris(3-tertiary butyl-5-isopropyl-1-pyrazolyl)borate anion), which contains a high-spin (hs) nickel(II) center and a coordinated 3NO-. This complex is very stable toward dioxygen due to steric protection of the nickel(II) center. Here, we report the dioxygen reactivity of a new Ni-NO complex, [Ni(NO)(I)(L1″)], with a less hindered N2 type bis(pyrazolyl)methane ligand, which creates a coordinatively unsaturated ligand environment about the nickel center. Here, L1″ denotes bis(3,5-diisopropyl-1-pyrazolyl)methane. This complex is also described as a hs-nickel(II) center with a bound 3NO-, based on spectroscopic and theoretical studies. Unexpectedly, the reaction of [Ni(NO)(I)(L1″)] with O2 yielded [Ni(κ2-O2N)(L1″)2](I3), with the oxidation of both 3NO- and the I- ion to yield NO2- and I3-. Both complexes were characterized by X-ray crystallography, IR, and UV-Vis spectroscopy and theoretical calculations.

Persistent Free Radicals in Petroleum

The persistent free radical content in petroleum is of the order 1018 spins/g (1 μmol/g), with higher and lower values found depending on origin and in different distillation fractions. The field of persistent free radicals in petroleum was reviewed with the aim of addressing and explaining apparent inconsistencies between free radical persistence and reactivity. The macroscopic average free radical concentration in petroleum is persistent over geological time, but individual free radical species in petroleum are short-lived and reactive. The persistent free radical concentration in petroleum can be explained in terms of a dynamic reaction equilibrium of free radical dissociation and association that causes a finite number of species at any given time to be present as free radicals. Evidence to support this description are observed changes in free radical concentration related to change in Gibbs free energy when the bulk liquid properties are changed and responsiveness of free radical concentration to dynamic changes in temperature. Cage effects, solvent effects, steric protection, and radical stabilization affect free radical reaction rate but do not explain the persistent free radical concentration in petroleum. The difference between persistent free radicals in straight-run petroleum and converted petroleum is that straight-run petroleum is an equilibrated mixture, but converted petroleum is not at equilibrium and the free radical concentration can change over time. Based on the limited data available, free radicals in straight-run petroleum appear to be part of the compositional continuum proposed by Altgelt and Boduszynski. Persistent free radical species are partitioned during solvent classification of whole oil, with the asphaltenes (n-alkane insoluble) fraction having a higher concentration of persistent free radicals than maltenes (n-alkane soluble) fraction. Attempts to relate persistent free radical concentration to petroleum composition were inconclusive.

Taming the Dichalcogenides: Isolation, Characterization, and Reactivity of Elusive Perselenide, Persulfide, Thioselenide, and Selenosulfide Anions.

Reactive sulfur species (RSS) and reactive selenium species (RSeS) play integral roles in hydrogen sulfide (H2S) and hydrogen selenide (H2Se) biological signaling pathways, and dichalcogenide anions are proposed transient intermediates that facilitate a variety of biochemical transformations. Herein we report the selective synthesis, isolation, spectroscopic and structural characterization, and fundamental reactivity of persulfide (RSS-), perselenide (RSeSe-), thioselenide (RSSe-), and selenosulfide (RSeS-) anions. The isolated chalcogenides do not rely on steric protection for stability and have steric profiles analogous to cysteine (Cys). Simple reduction of S8 or Se by potassium benzyl thiolate (KSBn) or selenolate (KSeBn) in the presence of 18-crown-6 afforded [K(18-crown-6)][BnSS] (1), [K(18-crown-6)][BnSeSe] (2), [K(18-crown-6][BnSSe] (3), and [K(18-crown-6][BnSeS] (4). The chemical structure of each dichalcogenide was confirmed by X-ray crystallography and solution-state 1H, 13C, and 77Se NMR spectroscopy. To advance our understanding of the reactivity of these species, we demonstrated that reduction of 1-4 by PPh3 readily generates E═PPh3 (E: S, Se), and reduction of 1, 3, and 4 by DTT readily produces HE-/H2E. Furthermore, 1-4 react with CN- to produce ECN-, which is consistent with the detoxifying effects of dichalcogenide intermediates in the Rhodanese enzyme. Taken together, this work provides new insights into the inherent structural and reactivity characteristics of dichalcogenides relevant to biology and advances our understanding of the fundamental properties of these reactive anions.