Stenotrophomonas Pavanii Research Articles

Enhanced degradation of polyethylene terephthalate (PET) microplastics by an engineered Stenotrophomonas pavanii in the presence of biofilm

Polyethylene terephthalate (PET) microplastics pose significant environmental and human health risks due to their resistance to degradation and accumulation in ecosystems. In this study, we engineered Stenotrophomonas pavanii JWG-G1, a robust biofilm-forming bacterium, to overexpress the PET hydrolase (DuraPETase) for PET microplastics degradation at ambient temperature. Nine endogenous PET hydrolases were identified through genome sequencing of S. pavanii, and were successfully expressed in Escherichia coli BL21(DE3). Among them, hydrolase Est_B achieved 100% degradation of bis(2-hydroxyethyl) terephthalate (BHET) at an initial concentration of 0.23 mg/mL at 30 °C within 4 h, identifying it as a novel BHETase. However, the PET degradation performance of all endogenous PET hydrolases was inferior to that of DuraPETase. The engineered strain overexpressing DuraPETase demonstrated a significant enhancement in PET degradation, achieving a 38.04 μM total product release of high-crystallinity PET microplastics after 30 days at 30 °C. The degradation extent was greater than that of low biofilm-forming engineered strains, attributing to the aggregation of DuraPETase on the PET surface in the presence of biofilm. Additionally, this engineered strain also maintained PET degradation activity across various water environments and demonstrated effectiveness in degrading other polyester plastics. This is the first report demonstrating that an engineered strain of Stenotrophomonas species is capable of simultaneously secreting exogenous hydrolase and degrading polyester microplastics, representing a novel approach in the development of engineered bacteria with potential applications in bioreactor systems and environmental remediation.

Stenotrophomonas pavanii MY01 induces phosphate precipitation of Cu(II) and Zn(II) by degrading glyphosate: performance, pathway and possible genes involved.

Microbial bioremediation is an advanced technique for removing herbicides and heavy metals from agricultural soil. In this study, the strain Stenotrophomonas pavanii MY01 was used for its ability to degrade glyphosate, a phosphorus-containing organic compound, producing PO4 3- as a byproduct. PO4 3- is known to form stable precipitates with heavy metals, indicating that strain MY01 could potentially remove heavy metals by degrading glyphosate. Therefore, the present experiment induced phosphate precipitation from Cu(II) (Hereinafter referred to as Cu2+) and Zn(II) (Hereinafter referred to as Zn2+) by degrading glyphosate with strain MY01. Meanwhile, the whole genome of strain MY01 was mined for its glyphosate degradation mechanism and its heavy metal removal mechanism. The results of the study showed that the strain degraded glyphosate best at 34°C, pH = 7.7, and an inoculum of 0.7%, reaching 72.98% within 3d. The highest removal of Cu2+ and Zn2+ in the test was 75.95 and 68.54%, respectively. A comparison of strain MY01's genome with glyphosate degradation genes showed that protein sequences GE000474 and GE002603 had strong similarity to glyphosate oxidoreductase and C-P lyase. This suggests that these sequences may be key to the strain's ability to degrade glyphosate. The GE001435 sequence appears to be related to the phosphate pathway, which could enable phosphate excretion into the environment, where it forms stable coordination complexes with heavy metals.

Transmission of carbapenem-resistant enterobacterales producing NDM-5 during the broiler breeding process in China

This study conducted a four-month monitoring of carbapenem resistance in a broiler breeding farm in China. A total of 185 carbapenem-resistant bacterial isolates were obtained from 2298 cloacal swabs from broiler breeders and their offspring within a production cycle. The detection rate of carbapenem-resistant isolates was higher during the brooding period. Whole-genome sequencing (WGS) was performed on 133 isolates based on sampling stages, including 113 carbapenem-resistant Enterobacterales (CRE) isolates and 20 Stenotrophomonas pavanii isolates, which have intrinsic resistance to carbapenems. A total of 69 antibiotic resistance genes (ARGs), including blaNDM-1, mcr-1, and blaNDM-5, were identified among the sequenced CRE isolates. Notably, blaNDM-5 (92.0 %, 104/113) was the primary contributor to carbapenem resistance. CRE isolates from the same breeding stage exhibited close genomic relationships, and the blaNDM-5 genes were observed in similar genetic backgrounds, indicating the transmission of CRE strains and blaNDM-5 during the broiler breeding process. No CRE was isolated from 0 d broiler offspring, suggesting that broiler breeders were not the direct source of CRE in their offspring. Tracing the feeding process revealed that brooder and rearing houses were likely key factors in the cross-transmission of CRE between broiler breeders and their offspring. CRE pose a significant threat to public health and food safety. China is one of the world's leading poultry producing and consuming countries. This study provided insights into the epidemiological trends and key transmission nodes of carbapenem resistance and CRE within the broiler breeding process, which could help the control of antibiotic resistance and bacterial infections in the broiler industry.

Targeted aggregation of PETase towards surface of Stenotrophomonas pavanii for degradation of PET microplastics

Polyethylene terephthalate (PET) is one of the most widely used plastics, but its fragmentation into microplastics poses significant environmental challenges. The recycling of PET microplastics is hindered by their low solubility and widespread dispersion in the environment, making microbial in-situ degradation a promising solution. However, existing PET-degrading strains exhibited the limited effectiveness, primarily due to the diffusion of secreted hydrolases away from the PET surface. In this study, Stenotrophomonas pavanii JWG-G1 was engineered to achieve the targeted aggregation of PET hydrolase PETase on the cell surface by fusing it with an endogenous anchor protein. This approach aims to maximise the local concentration of PETase around PET, thereby increasing the overall rate of PET degradation. The PETase surface-aggregated system, S. pavanii/PaL-PETase, demonstrated the highest degradation efficiency, achieving 63.3 % degradation of low-crystallinity PET (lcPET) and 27.3 % degradation of high-crystallinity PET bottles (hcPET) at 30 °C. This represents the highest degradation rate reported for a displayed whole-cell system at ambient temperature. Furthermore, this system exhibited broad-spectrum degradation activity against various polyesters. These findings suggest that this system offers a promising, eco-friendly solution to PET and other polyester pollution, with potential implications for environmental bioremediation strategies.

Isolation and characterization of Stenotrophomonas pavanii GXUN74707 with efficient flocculation performance and application in wastewater treatment.

The identification of microorganisms with excellent flocculants-producing capability and optimization of the fermentation process are necessary for the wide-scale application of bioflocculants. Therefore, we isolated and identified a highly efficient flocculation performance strain of Stenotrophomonas pavanii GXUN74707 from the sludge. The optimal fermentation and flocculation conditions of strain S. pavanii GXUN74707 was in fermentation medium with glucose and urea as the carbon and nitrogen sources, respectively, at pH 7.0 for 36 h, which treatment of kaolin suspension with 0.5 mL of the fermentation broth resulted in a flocculation rate of 99.0%. The bioflocculant synthesized by strain S. pavanii GXUN74707 was found mainly in the supernatant of the fermentation broth. Chemical analysis revealed that the pure bioflocculant consisted of 79.70% carbohydrates and 14.38% proteins. The monosaccharide components of MBF-GXUN74707 are mainly mannose (5.96 μg/mg), galactose (1.86 μg/mg), and glucose (1.73 μg/mg). Infrared spectrometric analysis showed the presence of carboxyl (COO-), hydroxyl (-OH) groups. The SEM images showed clumps of rod-shaped bacteria with adhesion of extracellular products. Furthermore, the strain decolored dye wastewater containing direct black, direct blue, and Congo red by 89.2%, 95.1%, 94.1%, respectively. The chemical oxygen demand (COD) and biological oxygen demand (BOD) removal rates after treatment of aquaculture wastewater with the fermentation broth were 68% and 23%, respectively. This study is the first to report the performance and application of strain Stenotrophomonas pavanii in wastewater flocculation. The results indicate that strain S. pavanii is a good candidate for the production novel bioflocculants and demonstrates its potential industrial practicality in biotechnology processes.

Characterization and utilization of multi-trait plant growth promoting rhizobacteria from arid soils of western Rajasthan for enhancing drought resilience in an arid legume

In the study, plant growth promoting rhizobacteria (PGPR) indigenous to arid western Rajasthan were isolated and screened for plant growth promoting (PGP) capabilities. Ten isolates showing multiple PGP activities were identified as Pseudomonas sp. G6-3, Staphylococcus sp. G6-4, Bacillus badius G8-6, Agrobacterium sp. G8-7, Bacillus pseudomycoides G10-1, Staphylococcus capitis subsp. capitis G11-4, Bacillus paralicheniformis G11-5, Bacillus subtilis G12-3, Stenotrophomonas pavanii G12-4, and Solibacillus isronensis G21-9. Physiological profiling of these isolates demonstrated them to be tolerant to drought (25% PEG-6000), high temperature (40 °C), alkalinity (pH 10.0), and salinity (4.5% NaCl). These PGPR significantly improved clusterbean seedling characteristics in moisture stress-induced hydroponic flask cultures and pots. PGPR inoculation of clusterbean in drought-induced pots significantly enhanced the plant dry weight by 15–33%, plant water potential by 5–8%, and the relative water content of leaves by 4–16%. There was also a significant reduction in the levels of anti-oxidant enzymes and proline in plant tissues under drought conditions, which indicated lower levels of stress experienced by the treated plants. These were translated into yield enhancements by 13–15% under rainfed conditions. The study demonstrates the ability of stress tolerant PGPR from arid western Rajasthan in enhancing drought resilience of arid legumes besides promoting their growth, and their potential utility in sustainable arid agriculture systems.

The Cultured Microbiome of Pollinated Maize Silks Shifts after Infection with Fusarium graminearum and Varies by Distance from the Site of Pathogen Inoculation.

Styles transmit pollen-derived sperm nuclei from pollen to ovules, but also transmit environmental pathogens. The microbiomes of styles are likely important for reproduction/disease, yet few studies exist. Whether style microbiome compositions are spatially responsive to pathogens is unknown. The maize pathogen Fusarium graminearum enters developing grain through the style (silk). We hypothesized that F. graminearum treatment shifts the cultured transmitting silk microbiome (TSM) compared to healthy silks in a distance-dependent manner. Another objective of the study was to culture microbes for future application. Bacteria were cultured from husk-covered silks of 14 F. graminearum-treated diverse maize genotypes, proximal (tip) and distal (base) to the F. graminearum inoculation site. Long-read 16S sequences from 398 isolates spanned 35 genera, 71 species, and 238 OTUs. More bacteria were cultured from F. graminearum-inoculated tips (271 isolates) versus base (127 isolates); healthy silks were balanced. F. graminearum caused a collapse in diversity of ~20-25% across multiple taxonomic levels. Some species were cultured exclusively or, more often, from F. graminearum-treated silks (e.g., Delftia acidovorans, Klebsiella aerogenes, K. grimontii, Pantoea ananatis, Stenotrophomonas pavanii). Overall, the results suggest that F. graminearum alters the TSM in a distance-dependent manner. Many isolates matched taxa that were previously identified using V4-MiSeq (core and F. graminearum-induced), but long-read sequencing clarified the taxonomy and uncovered greater diversity than was initially predicted (e.g., within Pantoea). These isolates represent the first comprehensive cultured collection from pathogen-treated maize silks to facilitate biocontrol efforts and microbial marker-assisted breeding.

Development of a plastic waste treatment process by combining deep eutectic solvent (DES) pretreatment and bioaugmentation with a plastic-degrading bacterial consortium

Polyethylene terephthalate (PET), a petroleum-based plastic, and polylactic acid (PLA), a biobased plastic, have a similar visual appearance thus they usually end up in municipal waste treatment facilities. The objective of this project was to develop an effective PET and PLA waste treatment process that involves pretreatment with deep eutectic solvent (DES) followed by biodegradation with a plastic-degrading bacterial consortium in a composting system. The DES used was a mixture of choline chloride and glycerol, while the bacterial strains (Chitinophaga jiangningensis EA02, Nocardioides zeae EA12, Stenotrophomonas pavanii EA33, Gordonia desulfuricans EA63, Achromobacter xylosoxidans A9 and Mycolicibacterium parafortuitum J101) used to prepare the bacterial consortium were selected based on their ability to biodegrade PET, PLA, and plasticizer. The plastic samples (a PET bottle, PLA cup, and PLA film) were pretreated with DES through a dip-coating method. The DES-coated plastic samples exhibited higher surface wettability and biofilm formation, indicating that DES increases the hydrophilicity of the plastic and facilitates bacterial attachment to the plastic surface. The combined action of DES pretreatment and bioaugmentation with a plastic-degrading bacterial consortium led to improved degradation of PET and PLA samples in various environments, including aqueous media at ambient temperature, lab-scale traditional composting, and pilot-scale composting.

Biofertilizer effect of some zinc dissolving bacteria free and encapsulated on Zea mays growth

Crop nutrition depends on zinc for enzymatic, oxidative, and metabolic processes. In the current study 20 different bacteria were isolated from five soil samples collected from different fields in Egypt. Bacterial isolates were screened for their ability to solubilize insoluble zinc oxide and zinc carbonate. The ability of selected isolates to tolerate soluble zinc was determined using different concentrations of (ZnSO4). Three bacterial isolates were selected with efficiency in solubilizing zinc oxide and zinc carbonate while tolerating high levels of soluble zinc. Molecular identification by 16S rRNA sequencing of the chosen isolates identified them as B3 (Acinetobacter calcoaceticus), B5 (Bacillus proteolyticus) and C6 (Stenotrophomonas pavanii). Sodium alginate beads formulated with the isolated bacteria were tested for stability under different storage conditions for 3 months. A pot experiment was conducted to study and compare the effect of using chosen isolates as an in vivo Zn solubilizer with amended ZnCO3 either alone or embedded in beads as carrier in the soil and its effect on growth parameters of Zea mays after 2 months. There was an increase in Zn uptake in all treatments compared to the control. However, plants grown in a pot treated with ZnCO3 and Acinetobacter calcoaceticus showed the highest zinc content and plant dry weight as compared to the control. Finally, selected isolates in both free and encapsulated forms showed improved plant growth parameters and higher zinc content and can be applied as biofertilizers to enhance soil fertility.

Probiotic Bacteria in Gastro-Intestinal Tract of Hybrid Catfish Fed Insect Protein Meal

The evaluations of insects’ protein as viable alternative protein source in fish diets are gaining more attention revealing that the protein has more comparative advantage than other protein sources. Therefore, this study was conducted to isolate and identify (using phylotypic and genotypic methods) bacteria isolates in the gastrointestinal tract (GIT) of African hybrid catfish fed supplemented grasshopper meal. Four feeding diets were adopted in this study; Diet A (conventional feed), Diet B (100% Grasshopper meal), Diet C (50% fishmeal and 50% Grasshopper meal) and Diet D (100% Fish meal). At the end of the 12- week experimental period, the fish were sacrificed for their GIT contents to determine bacteria diversity. In the catfish fed diet A, the bacteria isolates identified were Streptococcus pyogenes, Enterobacter aerogene, Staphylococcus aureus, Shigella flexneri, Escherichia coli, Leuconostoc latis and Klebsella pneumonia. In catfish fed diet B, Bacillus subtilis, Lactococcus bulgaricus, Lysinibacillus macroides, Lysinibacillus capsici, Stenotrophomonas pavanii and Lysinibacillus sp were isolated. Similarly, the fish fed diet C recorded the presence of Bacillus subtilis, Lactococcus bulgaricus, Lysinibacillus sp., Staphylococcus aureus, Lysinibacillus macroides, Stenotrophomonas pavanii and Enterobacter aerogene. The bacteria isolated in the GIT of fish fed diet D were Bacillus cereus, Staphylococcus aureus, Pedicoccus acidilactis, Escherichia coli, Salmonella typhi, Leuconostoc latis and Shigella flexneri. Probiotic bacteria were more in fish fed with diets B and C, an indication that the different ratio of supplemented grasshopper meal is good for the fish, as they have the potentials to boost the fish immune system and improve the microbial balance of its gastro-intestinal tract.

Isolation and characterization of plant growth promoting rhizobacteria from rhizospheric soil of selected pulses and their effect on Coriandrum sativum plants

Abstract. Pirapak W, Siriphap A, Inprasit T, Phuangsri C, Kraivuttinun P. 2022. Isolation and characterization of plant growth promoting rhizobacteria from rhizospheric soil of selected pulses and their effect on Coriandrum sativum plants. Biodiversitas 23: 5765-5770. Plant growth-promoting bacteria (PGPB) are recognized as efficient biofertilizers, biocontrol agents and microbial inoculants. In the present study five best plant growth-promoting rhizobacteria were isolated from the root zone of healthy and vigorously growing plants in an agricultural farm in the Uttaradit Province, Thailand. All the isolates were selected on the basis of nitrogen fixation, indole-3-acetic acid (IAA) production and phosphate solubilization. Based on morphological traits and 16S rRNA sequence analysis, isolated bacteria were distributed into the following six genera: Burkholderia cepacian (A05, A06), Agrobacterium deltaense (A13), Pseudomonas plecoglossicida (A39), Paenarthrobacter aurescens (A45) and Stenotrophomonas pavanii (A64). All the selected bacterial isolates boosted coriander growth. Paenarthrobacter aurescens (A45) showed the best results, it increased plant height (up to 1.38 times), dry weight (up to 1.63 times), stem diameter (up to 2.05 times) and biomass (up to 1.65 times). This is the first report of plant growth-promoting ability of Paenarthrobacter aurescens, which could be used as a biological agent instead of chemical fertilizers in agroforestry production to reduce environmental pollution and increase the yield of coriander.

Bioaugmentation with a defined bacterial consortium: A key to degrade high molecular weight polylactic acid during traditional composting

Polylactic acid (PLA) is commercialized as a compostable bio-thermoplastic. PLA degrades under industrial composting conditions where elevated temperatures are maintained for a long timeframe. However, these conditions cannot be achieved in a non-industrial compost pile. Therefore, this study aims to degrade high molecular weight PLA films by adding a PLA-degrading bacterial consortium (EAc) comprised of Nocardioides zeae EA12, Stenotrophomonas pavanii EA33, Gordonia desulfuricans EA63, and Chitinophaga jiangningensis EA02 during traditional composting. With EAc-bioaugmentation, PLA films (5–30% w/w) had complete disintegration (35 d), 77–82% molecular weight reduction (16 d), and higher CO2 liberation and mineralization than non-bioaugmented composting. Bacterial community analyses showed that EAc-bioaugmentation increased the relative abundance of Schlegelella, a known polymer degrader, and interacted positively with beneficial indigenous microbes like Bacillus, Schlegelella and Thermopolyspora. The bioaugmentation also decreased compost phytotoxicity. Hence, consortium EAc shows potential in PLA-waste treatment applications, such as backyard and small-scale composting.

Unraveling the mechanism of sulfur nutrition in pigeonpea inoculated with sulfur-oxidizing bacteria.

An investigation was carried out to understand the mechanism(s) involved in the uptake of sulfur (S) as sulfate in pigeonpea following single inoculation of two sulfur-oxidizing bacteria (SOB), Stenotrophomonas maltophilia and Stenotrophomonas pavanii in the treatments amended with either elemental sulfur (S0) or sulfate (S6). Colonization potential and biofilm formation were analyzed through confocal laser scanning microscope (CLSM) and scanning electron microscope (SEM). Furthermore, the effect of seed inoculation on root architecture, expression of genes involved in sulfur oxidation (sox) in bacterial inoculants, and genes involved in sulfate transport in pigeonpea (PpSULTR) were analyzed to correlate with the higher uptake of S in roots and shoots of pigeonpea. Both the SOB exhibited a good colonization potential and biofilm formation on the roots of pigeonpea. Among the 11 sox genes targeted in rhizosphere of pigeonpea, expression was achieved for seven genes, which showed 2-fold increase in treatments inoculated with S. maltophilia and amended with either S6 or S0. The inoculation of S. maltophilia and amendment of S0 led to increased expression of PpSULTR genes by several folds in roots. The inoculation of SOB had a significant influence on non-enzymatic (osmolytes like proline) and enzymatic (PAL, peroxidase, superoxide dismutase, and catalase) levels. The results revealed a significant increase in sulfur uptake in roots and shoots in treatment inoculated with S. maltophilia and amended with S6. The investigation showed that the SOB-mediated over-expression of PpSULTR genes in roots of pigeonpea and sox genes in the rhizosphere were acting synergistically in facilitating higher uptake and translocation of S in roots and shoots of pigeonpea plants.

Sulfur-Oxidizing Bacteria From Coal Mine Enhance Sulfur Nutrition in Pigeonpea (Cajanus cajan L.)

The present investigation was carried out to isolate, identify, and characterize sulfur-oxidizing bacteria (SOB) from coal mines and to evaluate the efficient strains for their ability to influence plant growth and S uptake in pigeonpea. Thirteen bacterial isolates belonging to Stenotrophomonas maltophilia (2), Stenotrophomonas pavanii (2), Rhizobium pusense (5), Bacillus velezensis (2), and Paenibacillus massiliensis (2) were obtained. Among these, seven strains that could reduce the pH of thiosulfate broth were further characterized for sulfur oxidation, plant growth-promoting (PGP) attributes, and in planta studies. Among the seven strains characterized, maximum sulfate ion was recorded for S. maltophilia DRC-18-7A (311.43 mg L−1) closely followed by S. pavanii DRC-18-7B (273.44 mg L−1) and S. maltophilia DRC-18-10 (265.75 mg L−1) after 21 days of inoculation. Among the PGP attributes quantified, maximum P solubilization was recorded in case of S. maltophilia DRC-18-7A (24.39 μg ml−1), while highest siderophore production and IAA production were recorded in S. maltophilia DRC-18-10 (14.25%) and R. pusense DRC-18-25 (15.21 μg ml−1), respectively. S. maltophilia DRC-18-7A closely followed by S. pavanii DRC-18-7B outperformed others in enhancing seed germination (%) and vigour indices. Results clearly indicated that microbial inoculants colonized the plant roots and developed biofilm on the root surface. It was further observed that plants treated with microbial inoculants induce an early formation of secondary and tertiary roots in the pigeonpea compared to the untreated control which was further confirmed by assessing the root architecture using the root scanner. Inoculation of these two strains to pigeonpea significantly enhanced plant growth parameters, the activity of reactive oxygen scavenging (ROS) enzymes, and accumulation of flavonoids, carotenoids, and proline both under sterilized and non-sterilized growth medium (sand and soil in 1:3 ratio). The application of microbial inoculants significantly increased the uptake of nitrogen, phosphorus, potassium, and sulfur in plant shoots. Further, transcript level of phosphate, potassium, and sulfur transporter genes significantly increases upon microbial inoculation leading to increased uptake and translocation of P, K, and S in the pigeonpea. The results indicate that S. maltophilia DRC-18-7A and S. pavanii DRC-18-7B could be recommended as inoculants for pigeonpea to improve its growth and sulfur nutrition.

Rapid biodegradation of high molecular weight semi-crystalline polylactic acid at ambient temperature via enzymatic and alkaline hydrolysis by a defined bacterial consortium

Biodegradation of polylactic acid (PLA) in the natural environment is usually slow. This study aims to develop a bacterial consortium that biodegrades semi-crystalline PLA films with high molecular weight, at an ambient temperature of 30 °C. PLA-degrading bacteria were enriched from polymeric wastes. Proteobacteria, Bacteroidia and Actinobacteria relative abundances were high during the PLA-enrichment process. Four isolated bacteria, Nocardioides zeae EA12, Stenotrophomonas pavanii EA33, Gordonia desulfuricans EA63, and Chitinophaga jiangningensis EA02, which synthesized PLA degradative enzymes such as protease, esterase and lipase were mixed as consortium EAc. PLA films inoculated with EAc showed biofilm formation (10.54 log CFU/cm2), molecular weight (Mv) reduction (61%), and weight loss (9.68%) after 35 days. The extent of biodegradation was significantly higher than that by individual strains. Decrease in PLA Mv fitted the first order kinetics with a rate constant of 0.028 d−1. UV spectroscopy of biodegraded PLA suggested the carbonyl bond cleavage, while substantial chain scissions in the ester backbone of PLA were detected by ATR-FTIR. The rapid PLA biodegradation was due to the synthesis of diverse hydrolases and increase in pH, which led to enzymatic and alkaline hydrolysis. Consequently, EAc consortium could be applied in general solid waste treatment facilities for PLA degradation.

In-Depth Characterization of Plant Growth Promotion Potentials of Selected Alkanes-Degrading Plant Growth-Promoting Bacterial Isolates.

The use of plant growth-promoting rhizobacteria (PGPR) as a bioremediation enhancer in plant-assisted phytoremediation requires several steps, consisting of the screening, selection, and characterization of isolates. A subset of 50 bacterial isolates representing a wide phylogenetic range were selected from 438 morphologically different bacteria that were originally isolated from a petroleum hydrocarbon (PHC)-polluted site of a former petrochemical plant. Selected candidate bacteria were screened using six conventional plant growth-promoting (PGP) traits, complemented with the genetic characterization of genes involved in alkane degradation, as well as other pertinent functions. Finally, the bacterial isolates were subjected to plant growth promotion tests using a gnotobiotic approach under normal and stressed conditions. Our results indicated that 35 bacterial isolates (70%) possessed at least four PGP traits. Twenty-nine isolates (58%) were able to utilize n-hexadecane as a sole carbon source, whereas 43 isolates (86%) were able to utilize diesel as the sole carbon source. The presence of catabolic genes related to hydrocarbon degradation was assessed using endpoint PCR, with the alkane monooxygenase (alkB) gene found in 34 isolates, the cytochrome P450 hydroxylase (CYP153) gene found in 24 isolates, and the naphthalene dioxygenase (nah1) gene found to be present in 33 isolates. Thirty-six strains (72%) promoted canola root elongation in the growth pouch assay. After several rounds of screening, seven bacterial candidates (individually or combined in a consortium) were tested for canola root and shoot growth promotion in substrates amended by different concentrations of n-hexadecane (0%, 1%, 2%, and 3%) under gnotobiotic conditions. Our results showed that Nocardia sp. (WB46), Pseudomonas plecoglossicida (ET27), Stenotrophomonas pavanii (EB31), and Gordonia amicalis (WT12) significantly increased the root length of canola grown in 3% n-hexadecane compared with the control treatment, whereas Nocardia sp. (WB46) and Bacillus megaterium (WT10) significantly increased shoot length compared to control treatment at the same concentration of n-hexadecane. The consortium had a significant enhancement effect on root length compared to all isolates inoculated individually or to the control. This study demonstrates that the combination of PGPR traits and the PHC degradation potential of bacteria can result in an enhanced beneficial effect in phytoremediation management, which could lead to the development of innovative bacterial inoculants for plants to remediate PHC-contaminated soils.

Isolation and Identification of New Strains of Bacteria Producing Carotenoids Pigments which Isolated from a Different Sources in Basrah, Iraq

Carotenoids are tetraterpenoid organic pigments found in plants, bacteria, fungi, and algae, and come in a variety of colours including yellow, orange, red, and pink, fund all of these organisms, carotenoids can be complex lipids and other metabolic components. Carotenoids are used in a variety of ways, including as antioxidants, antibacterial agents, and food additives.The present study included the isolation of bacteria producing carotenoids pigments that isolated from different sources (soil, food and air) in Basrah, Iraq. Results showed, that out of 24 isolates isolated from above sources which can be produce carotenoids. Ten of those isolates were gave the highest productivity of pigments. Morphological, biochemical, and gene investigations were performed on all 10 isolates. The 16SrRNA sequence analysis of all isolates was recorded as new strains and put in the BDDJ Gene Bank, and the phylogenetic tree of the isolates was constructed using MEGA 6 software. Those strains that are the primary screening for carotenoids production.Bacterial isolates were characterized and identified based on phenotypic properties and molecular techniques. five strains, belonging to genera of Plantibacter flavus BKA3, Sphingobacteruim faccium BKA4, Stenotrophomonas pavanii BKA5, Microbacteruim keltanolyticum BKA6, Brachybacteruim muris BKA12, were isolated from soil and four strains, belonging to genera of Kocuria turfanesis BKA8, Kocuria rosea BKA10, Massilia timonae BKA11, were isolated from air, the strain Pseudomonase cani BkA13 and P. fluorescens BKA2, isolated from food. The carotenoid was extracted by methanol solvent and it’s analyzed by spectrophotometric within 400-600nm and wave length maximum was found at 460nm. The results showed the isolate of K. turfanesis BKA8, reached a height of carotenoid content of 753.11g.gm-1 after 72 hours of shaking culture at 150 rpm in nutrient broth at 27˚C, pH 7.

Accelerated biodegradation of polyethylene terephthalate by Thermobifida fusca cutinase mediated by Stenotrophomonas pavanii

Polyethylene terephthalate (PET) is a general plastic that produces a significant amount of waste due to its non-biodagradable properties. We obtained four bacteria (Stenotrophomonas pavanii JWG-G1, Comamonas thiooxydans CG-1, Comamonas koreensis CG-2 and Fulvimonas soli GM-1) that utilize PET as a sole carbon source through a novel stepwise screening and verification strategy. PET films pretreated with S. pavanii JWG-G1 exhibited weight loss of 91.4% following subsequent degradation by Thermobifida fusca cutinase (TfC). S. pavanii JWG-G1 was able to colonize the PET surface and maintain high cell viability (over 50%) in biofilm, accelerating PET degradation. Compared with PET films with no pretreatment, pretreatment with S. pavanii JWG-G1 caused the PET surface to be significantly rougher with greater hydrophilicity (contact angle of 86.3 ± 2° vs. 96.6 ± 2°), providing better opportunities for TfC to contact and act on PET. Our study indicates that S. pavanii JWG-G1 could be used as a novel pretreatment for efficiently accelerating PET biodegradation by TfC.

Isolation and selection of nitrite metabolising bacteria from the bottom mud of lobster culture area in Xuan Dai bay, Phu Yen province

The study had isolated and selected groups of bacteria that metabolise nitrite from the bottom mud of lobster cages in Xuan Dai bay, Phu Yen province. Analysis results from 21 sludge samples taken from 11 cages of lobster farming area isolated 16 strains of bacteria capable of nitrite metabolism. After investigating biological characteristics and nitrite metabolism of bacteria strains, 10 strains of bacteria were collected with the ability to metabolise nitrite over 95% in 72 hours. In addition, 10 strains of bacteria with the highest NO2- treatment efficiency, identified by genetic analysis and looked up on BLAST, defined as Stenotrophomonas pavanii, Chryseobacterium gleum, Stenotrophomonas maltophilia, Delftia lacustris, Acinetobacter junii

Plant Growth Promoting Rhizobacteria (PGPR): as a Potential Biocontrol for Curvularia lunata Invitro

Rhizobacteria is an environmentally friendly and sustainable biocontrol agent, used as an alternative in the management of plant pathogens. Furthermore, their suppression mechanism often varies, as some are capable of producing antibiotic compounds, competing with, and increasing plant growth, although t some forms possess multiple control. This study, therefore, aims to determine the activity of rhizobacterial antibiosis against Curvularia lunata in vitro. The experiment was conducted at the Laboratory of Biological Control, Department of Pests and Plant Diseases, Faculty of Andalas University. In addition, the procedure required using an experimental method, which was carried out in a Completely Randomized Design. The antagonistic rhizobacterial selection of C. lunata was carried out using a dual culture test, on a total of 7 rhizobacteria, and 4 were selected, encompassing Stenotrophomonas malthopilia KJKB5.4, Stenotrophomonas pavanii LMTSA5.4, Bacillus cereus AJ34 and Alcaligenes faecalis AJ14 as potential candidates in the control of C. lunata, suppression effectiveness that was above 50%. In addition, it was also established that all four isolates the propensity to produce chitinase enzymes.