SummaryBesides the well‐known role in cancer, Shh signaling pathway direct cell proliferation, cell fate determination and EMT, remaining largely expressed in the stem cell compartment of adult tissues. Recently, we proposed Ptch1+/‐ mice as a relevant radiation‐induced cataract mouse model. These mice, develop cataract with a very high incidence (45.2%) and short latency after irradiation with 3 Gy of x‐rays, when radiation is delivered during the early stage of postnatal lens development. Molecular analyses suggest that Shh and TGF‐ß signaling cooperate to promote Ptch1‐associated cataract development by activating EMT and converging on Nanog. Furthermore, using a range of decreasing radiation doses to assess the cataract response in these mice, nonlinear biological responses were observed using doses ≤ 1 Gy, with a suggestion for borderline effects at 2 Gy, both for gross cataract development and for activation of the genetic pathways involved in the molecular pathogenesis of Shh‐associated cataract.These findings highlight a novel function of Shh signaling unrelated to cancer and provide a new animal model to investigate the molecular pathogenesis of cataract formation.