Fruiting Stage Research Articles

Green Fruit‐Stem Pairing and Clustering for Machine Vision System in Robotic Thinning of Apples

ABSTRACTApples are one of the most highly‐valued specialty crops in the United States. Recent labor shortages have made crop production difficult for fruit growers, including the task of green fruit thinning. Current methods including hand, chemical, and mechanical thinning impose tradeoffs between selectivity, cost, tree damage, and speed. A robotic green fruit thinning system could potentially selectively thin fruit in a quick, cost‐effective, and non‐damaging manner. The machine vision system would be a critical component for robotic thinning, and would not only need to perform green fruit detection/segmentation, but also fruit‐stem pairing and clustering to facilitate proper decision‐making for thinning. A neural network‐based fruit and stem pairing algorithm was devised and evaluated; an LSTM‐based clustering algorithm was devised and compared to the density‐based clustering algorithm, OPTICS. The algorithms were evaluated on an image data set consisting of GoldRush, Fuji, and Golden Delicious cultivars at the green fruit stage, with evaluations on overall performance, cultivar‐wise performance, cluster size‐specific performance, and feature importance. For fruit and stem pairing, the neural network‐based pairing algorithm achieved an AP of 81.4% on all fruits and stems, and that reached 90.6% when only fruits and stems with labeled angles were considered. For green fruit clustering, the LSTM‐based clustering achieved a clustering success rate of 68.4%, whereas the OPTICS algorithm obtained 50.9%. The algorithms will be further implemented in a pipeline of a future green fruit thinning vision system, as well as integrate the use of point clouds and other 3D orchard information to improve pairing and clustering performance.

Effect of extraction and purification on the structure and activity of Flammulina velutipes polysaccharides: a review

SummaryFlammulina velutipes (F. velutipes) is one of the most widely consumed edible mushrooms worldwide. The growth of F. velutipes involves two primary stages: the mycelium and fruiting body. Unique polysaccharides are produced in each stage; mycelial polysaccharides (FVMPs) are produced during the mycelial fermentation stage, while fruiting body polysaccharides (FVFBPs) are produced during the fruiting stage. These polysaccharides, the major bioactive components of F. velutipes, have garnered significant attention due to their various functions and activities. Notably, they exert functional activities by mediating gut flora, including antioxidant, anti‐inflammatory, and immunomodulatory properties, reduce blood sugar and lipid levels, and enhance cognitive performance. This study examined the variations in FVMPs and FVFBPs resulting from different extraction and purification methods, with a specific focus on delineating their distinct structural characteristics. This study further explored the impact of the structural composition of FVMPs and FVFBPs on their health‐promoting properties, focusing on the relationship between their structures and their functional and biological effects. Finally, this study outlines future research avenues designed to contribute to the ongoing research in the field of bioactive FVMPs and FVFBPs.

First report of leaf spot disease caused by Fusarium asiaticum on Lonicera caerulea L. in Heilongjiang Province, China.

Heilongjiang is the largest province with the small, cultivated fruit plant, blue honeysuckle (Lonicera caerulea L.), in China (Sun et al. 2024). Between September 2022 and September 2023, a leaf spot disease was observed on about 10 percent of blue honeysuckles of the 'Lanjingling' cultivar grown in a 6.66-ha field in Mudanjiang (129.38°E, 44.59°N), Heilongjiang Province, China. The typical symptoms include a few small brown sunken leaf spots (approximately 2 mm) in the fruiting stage that gradually expand into larger brown sunken lesions (approximately 10 mm) in the senescence stage (Fig. S1). Small 3-4-mm segments of infected tissue from 100 randomly selected leaf samples with typical symptoms were surface sterilized with 75% ethanol and 5% sodium hypochlorite, rinsed in sterile distilled water, and transferred to 9-cm Petri dishes containing potato dextrose agar (PDA) after drying. Finally, 10 isolated fungi were obtained through single-spore culture on PDA, and their conidia displayed a morphology consistent with Fusarium spp. (Zheng et al. 2023), and no other fungi were isolated. The fungal colonies on PDA were pink to dark red with fluffy aerial mycelium and pigmentation (Fig. S2). Microconidia were not observed, and the macroconidia of fungi had 2 to 6 septa, which were slender, sickle-shaped to nearly curved, with an average size of 38.83 (21.30 to 55.20) × 3.87 (2.70 to 6.60) μm (n = 50) on carnation leaf agar (Fig. S3). Genomic DNA was extracted from the representative isolate LD-245 for molecular verification, and PCR amplification was performed with ITS1/ITS4 (White et al. 1990), RPB2-5F2/RPB2-7CR (Liu et al. 1999), and EFl/EF2 (O'Donnell et al. 1998) primers. Sequences of LD-245 ITS (OR565903), RPB2 (OR584061), and TEF (PP965657) revealed 99 to 100% (494/494, 722/726, and 654/654) of identity with Fusarium asiaticum (MT322117, MH582121, and MT330257). Phylogenetic tree was constructed based on the concatenated sequences of ITS, RPB2, and TEF genes, and LD-245 was clustered with F. asiaticum (Fig. S4, Table S1). Therefore, based on the morphological characteristics and molecular phylogeny, LD-245 was identified as F. asiaticum. Six two-year-old healthy plants of the 'Lanjingling' cultivar were selected for a pathogenicity test. Three plants were inoculated with LD-245 conidial suspension (1 × 106 spores/ml) or with sterile water as an experimental control. All plants were cultured in a greenhouse (28℃, 75% relative humidity, 12 h light and dark cycle), and each experiment was replicated three times. Typical leaf spot symptoms were observed on inoculated leaves after 10 days (Fig. S5), whereas no symptoms were detected on water-treated leaves. The pathogens re-isolated from infected leaves displayed the same morphological and molecular traits as the initial isolate, and were again identified as F. asiaticum, confirming Koch's postulate. F. asiaticum was previously reported on giant elephant's ear (Alocasia macrorrhizos) (Zheng et al. 2023), causing leaf spot disease in China. This study is the first report of blue honeysuckle leaf spot disease caused by F. asiaticum in China. China has the largest blue honeysuckle cultivation area globally, and the production of blue honeysuckle with horticultural value is important for growers (Sun et al. 2024). Therefore, we hope researchers can develop efficient measures to manage emerging plant diseases in the future.

Mapping and cloning of pepper fruit color-related genes based on BSA-seq technology

Fruit color is an important qualitative trait that greatly influences the marketability of peppers. Fruit color can be divided into two categories. Green fruit color denotes commercial maturity, whereas ripe fruit indicates physiological maturity. Herein, segregation populations were created using the ‘D24’ with pale green in the green fruit stage, orange in the mature fruit stage, and ‘D47’ with green in the green fruit stage and red in the mature fruit stage. BSA-seq and genetic linkage map analysis revealed green fruit color was linked to (gyqtl1.1) on Chr1 and (gyqtl10.1) on Chr10, while mature fruit color was linked to Chr6. Using functional annotation, sequence, and expression analysis, we speculate that an SNP mutation in the CapGLK2 gene at the gyqtl10.1 interval could initiate premature termination of translation, thus yielding green to pale green fruits in D47. Conversely, the orange color in mature D24 fruits is due to the Indel-mediated premature termination of translation of the CapCCS gene. Our research offers a theoretical foundation for choosing different varieties of pepper fruit based on their color.

Response of Different Exogenous Phytohormones to Rice Yield Under Low-Temperature Stress at the Filling Stage

This paper aims to clarify the effects of different exogenous phytohormones on the physiological traits of rice (Oryza sativa L.) at the early stage of irrigation under low-temperature stress. In this study, two types of rice varieties with different temperature sensitivities screened out previously, namely, a cold-tolerant variety (Nan Jing 9108) and a low-temperature-sensitive variety (Hui Liang You 898), were used in pots to simulate the process of low-temperature stress in rice at the early stage of grouting (6–9 days after anthesis) with artificial low-temperature treatments. The experimental treatments were 450 mg L−1 Methyl jasmine acid (MJ), 46 mg L−1 Melatonin (MT), 69 mg L−1 Salicylate (SA), 40 mg L−1 Erythromycin (GA3), 25 mg L−1 Zeatin (Z), 145 mg L−1 Spermidine (SPD), and 5 mg L−1 Abscisic acid (ABA) sprayed on rice before low-temperature stress, while low-temperature treatment without spraying (DK) and conventional planting without spraying (CK) were added as the control. The results showed that compared with the room temperature control (CK, sprayed with deionized water), the low-temperature control (DK, low-temperature treatment, and sprayed with deionized water) all significantly reduced the rice grain yield. Different exogenous hormones sprayed before low-temperature stress could increase rice yield, among which, Z and SPD spraying treatments had a better effect on the yield of Hui Liang You 898, while different exogenous hormone treatments increased the yield of Nan Jing 9108 in an average manner. The Z and SPD treatments increased the yield of Hui Liang You 898 by 24.87% and 26.16% and that of Nan Jing 9108 by 15.87% and 17.80%, respectively. This was mainly attributed to the significant increase in thousand-grain weight and fruiting rate, while there was no significant difference in the number of spikes and number of grains. The different exogenous hormone treatments were able to delay leaf senescence, enhance the photosynthetic production capacity of plants by increasing leaf chlorophyll content, and thus increase the accumulation of photosynthetic assimilation products and population growth rate after flowering. Among them, both Z and SPD treatments resulted in a population growth rate of more than 30% from spike flushing to maturity, which led to a higher dry matter accumulation of the plant at maturity. In addition, in the dry matter distribution of the plant at maturity, the seeds occupied a higher accumulation amount and proportion compared with the respective DK; the SPD treatment resulted in the maximum distribution rate of seeds at maturity of Hui Liang You 898, with an increase of 8.27%, and the Z treatment resulted in the maximum distribution rate of seeds at maturity of Nan Jing 9108, with an increase of 7.34%. At the same time, the Z treatment significantly increased the activities of adenosine diphosphate glucose phosphorylated enzyme (AGP) and starch branching enzyme (SBE) in the grains of both varieties, which resulted in the accumulation of more starch and ultimately increased the rice grain yield. The results verified that different exogenous phytohormones could be used to regulate the insufficiency of grouting caused by low-temperature stress during the grouting and fruiting stages of rice and enriched their agronomic and physiological traits in response at the same time.

Effect of Aspect and Elevation on the Degree of Aggregation and the Functional Traits in Phlomis floccosa D. Don (Lamiacae) Populations

ABSTRACTPhlomis floccosa D. Don populations are distributed in different microhabitats within Al‐Akhdar mountainous landscape, in Libya. Five populations were selected for the study. Spatial relationships among individuals were investigated using the spatial point pattern analysis. Functional traits were recorded at the vegetative, flowering and fruiting stages. Seeds were collected at the dispersal stage to estimate the regeneration potential. Greater degree of aggregation was found at higher elevations on both northern and southern sides of the mountain but with different demography and traits. On the northern side, greater degree of aggregation was accompanied by absence of large adults and greater percentage of seedlings, and it was positively associated with the reproductive output, while negatively associated with the size and regeneration indices. On the southern side, greater degree of aggregation was accompanied by greater contribution of large adults and greater percentage of seedlings, and it was positively associated with the size and regeneration indices, while negatively associated with the reproductive output. On the other hand, the population in the wadi (valley) microhabitat showed coarse‐scale clumped pattern, higher values for most of the functional traits and higher contribution of seedlings but with lower facilitation offered by adults. The variations in the degree of aggregation and the functional traits trade‐offs in P. floccosa populations ensured successful survival and regeneration in the heterogeneous microhabitats. Meanwhile, stressed conditions greatly affect the survival and regeneration of the species suggesting the need for conservation measures to overcome the adverse effects of climate change.

Study on the Changes in the Microbial Community in Rhizosphere Soil of Blueberry Plants at Different Growth Stages

In order to clarify the relationship between mineral nutrients and rhizosphere microorganisms at different growth and development stages of blueberry (Vaccinium spp.), this work studied the dynamic changes in element content and microbial quantity in different parts of blueberry plants. The test material was a 12-year-old half-highbush blueberry variety (‘Beilu’). The changes in the mineral nutrient elements in leaves, branches and the soil of blueberry plants were studied at the full bloom stage (T1), green fruit stage (T2), mature stage (T3) and late mature stage (T4), and the correlations of the average contents of mineral elements in the four periods were studied. The bacterial community in the rhizosphere soil was determined and analyzed using 16S rRNA high-throughput sequencing technology. The results showed that the changes in other mineral elements in various parts of blueberry plants varied in different periods. Nitrogen (N) showed a downward trend in branches, leaves and soil, especially in leaves (p < 0.05). The N contents in T2, T3 and T4 decreased by 9.9%, 26.4% and 29.9%, respectively. The N contents in the leaves and branches showed a downward trend at different growth stages, especially in leaves. The phosphorus (P) content in leaves showed a trend of increasing first and then decreasing, while it continued to increase in branches. The content of potassium (K) in leaves changed significantly, where it increased first and then decreased. The content of calcium (Ca) in leaves decreased first and then increased, while the content of magnesium (Mg) in branches and leaves decreased first and then increased, and the relative change was significant. The contents of iron (Fe) and zinc (Zn) in leaves decreased first and then increased, while the contents of manganese (Mn) and copper (Cu) were relatively stable. Cu decreased first and then increased in leaves and soil, and it increased first and then decreased in branches. The mineral nutrients in different growth stages of blueberry showed significant correlation in leaves, branches and soil. Mn in leaves was significantly positively correlated with P, Ca, Mg, Mn, Cu and Zn in soil (p < 0.01). Nitrogen and calcium in leaves were significantly correlated with manganese and phosphorus in soil, respectively. Ca in branches was significantly positively correlated with N and K in soil and was significantly positively correlated with Zn in soil (p < 0.01). Magnesium was significantly negatively correlated with iron in soil. The bacterial community structure of the blueberry rhizosphere soil changed significantly over time (p < 0.05), and the relative abundance showed the following trend: T4 > T2 > T3 > T1. At the phylum level, Proteobacteria, Acidobacteria, Actinobacteria, Chloroflexi and Verrucomicrobia were the dominant bacteria in different periods. Candidatus solibacter and Bryobacter were significantly higher in T1 and T3 than in T1 and T4. Bradyrhizobium flora increased significantly at T3. Sphingomonas increased significantly at T1 (p < 0.05).

Genome-wide identification and analysis of anthocyanin synthesis-related R2R3-MYB genes in Fragaria pentaphylla

BackgroundMYB transcription factors regulate anthocyanin biosynthesis across numerous plant species. However, comprehensive genome-wide investigations regarding the R2R3-MYB gene family and its involvement in regulating anthocyanin biosynthesis in the red and white fruit color morphs of Fragaria pentaphylla remain scarce.ResultsA total of 101 FpR2R3-MYB genes were identified from the F. pentaphylla genome and were divided into 34 subgroups based on phylogenetic analysis. Gene structure (exon/intron) and protein motifs were particularly conserved among the FpR2R3-MYB genes, especially members within the same subgroup. The FpR2R3-MYB genes were distributed over seven F. pentaphylla chromosomes. Analysis of gene duplication events revealed five pairs of tandem duplication genes and 16 pairs of segmental duplication genes, suggesting that segmental duplications are the major pattern for expansion of the FpR2R3-MYB gene family expansion in F. pentaphylla. Cis-regulatory elements of the FpR2R3-MYB promoters were involved in cellular development, phytohormones, environmental stress and photoresponse. Based on the analysis of the FpR2R3-MYB gene family and transcriptome sequencing (RNA-seq) data, FpMYB9 was identified as a key transcription factor involved in the regulation of anthocyanin synthesis in F. pentaphylla fruits. The expression of FpMYB9 increases significantly during the ripening stage of red fruits, as confirmed by reverse transcription quantitative real-time PCR. In addition, subcellular localization experiments further confirmed the nuclear presence of FpMYB9, supporting its role as a transcription factor involved in anthocyanin biosynthesis.ConclusionOur results showed that the FpR2R3-MYB genes are highly conserved and play important roles in the anthocyanin biosynthesis in F. pentaphylla fruits. Our results also provide a compelling basis for further understanding of the regulatory mechanism underlying the role of FpMYB9 in anthocyanin formation in F. pentaphylla fruits.

Effect of Different Plant Growth Regulators Applied as Foliar Sprays on the Growth and Flowering of Brinjal (Solanum melongena L.) under Agro-Climatic Conditions of Chhattisgarh Plains, India

Present investigation “Effect of different plant growth regulators applied as foliar sprays on the growth and flowering of Brinjal (Solanum melongena L.) under agro-climatic conditions of Chhattisgarh plains” in var. Kashi Taru is located at the farm of KVK (Raipur) affiliated with IGKV, Raipur,(C.G.) in Rabi season 2022-23.The experiment was conducted in RBD (Randomized Block Design) with 3 replications, consisting of 10 treatments of 3 plant growth regulators with different concentrations, including GA3 (25, 50 and 75 ppm); IAA (25, 50 and 75 ppm) and NAA (25, 50 and 75 ppm) along with control as foliar application at pre flowering stage (30 DAT) and pre fruiting stage (45 DAT). Among the different treatments, the findings indicated that the application of Treatment T3 i.e. GA3 @ 75 ppm gave the maximum plant height (89.96 cm), primary branches (11.76) and secondary branches (25.17) per plant over control. The least days taken to 50% flowering were recorded (51.62 days) with GA3@ 75 ppm and maximum days taken to 50% flowering were found with control (58.87 days). The highest number of flowers per cluster was recorded in GA3@ 75 ppm (4.01), followed by NAA@75 ppm (3.97). Thus, a suitable level i.e., 75 ppm of GA3, is effective in enhancing brinjal growth and flowering in the agro-climatic conditions of the Chhattisgarh plains.

Bio-fortification with selenium (Se) improves quality and nutrient profile in citrus fruit

Selenium (Se) is an essential nutrient for the human body. Humans can enhance Se absorption by consuming horticultural plants, particularly fruits. Therefore, there is need for Se biofortification in fruits to meet the human demand for Se. The objective of this study was to determine the optimal Se application rate, application stage and method, and to assess their impacts on improving both the quality and nutrient profile of a sweet orange cultivar 'Hongjiangcheng' (Citrus sinensis (L.) Osbeck). 'Hongjiangcheng’ is a notable variety of mandarin orange, acclaimed for its large size, thin and smooth skin, orange-red flesh, tender and juicy texture, balanced sweetness and acidityand distinctive flavor. A field experiment was conducted at the Qiaotou Town Test Base in Chengmai County, Hainan Province, China. Biofortification of Se was done through foliar and soil application methods. Treatments were: Control (C) with no application of Se, foliar application of 25 (SeF1), 50 (SeF2), 100 (SeF3) and 200 (SeF4) mg/L and soil application of 100 mg/L (SeS1) as well as a combination of 100 mg/L Se in soil along with 50 mg/L Se on leaves (SeS1F2). At start of the experiment, 189 healthy, four-year-old citrus trees of similar size and normal growth were selected. The trees were divided into three groups of 63 each. Each group received the aforementioned treatments at the young fruit, expanding fruit and premature fruit stages. The Se was applied once during each stage before 9:00 am on sunny days. Treatments were arranged in a randomized complete block design with 9 biological replicates (7 treatments × 9 replicates = 63 citrus trees/ application stage). Foliar application of Se at rate of 200 mg/L (SeF4) enhanced total Se content in leaves by 105, 34 and 69 % at young fruit, expanding fruit and premature fruit stages compared to control (p≤0.05). Respective increments in fruits were 264, 22 and 21 %. The total Se content in leaves were 32 and 40 % higher in the SeF4 (foliar) compared to SeS1 and SeS1F2 (soil) treatments across all development stages (p≤0.05), respectively. The respective increments in fruits total Se content were 16 and 52 %. Only at the young fruit stage, the organic Se content in fruits was significantly higher in the SeF4 compared to soil application treatments (p≤0.05). Single fruit weight was enhanced by 16.61, 13.69 and 4.36 g by foliar than soil application at young fruit, expanding fruit and premature fruit stages, respectively. It was significantly higher (155.53 vs. 113.13 g) after application of SeF4 treatment at young fruit stage relative to all other treatments (p≤0.05). The application of SeF4 at the young fruit stage resulted in an increased seed rate (97 %), total soluble solids (28 %) and solid-to-acid ratio (75 %), while titratable acid decreased by 26 % compared to the control. Interestingly, Se application had non-significant effects on the fruit shape index, peel rate and residue rate across all stages (p>0.05). Additionally, a positive correlation was observed between fruit Se content and several quality indices like total soluble solids, solid acid ratio, fruit shape index and fruit weight at young fruit stage (p≤0.05). It is concluded that foliar application of Se at 200 mg/L (SeF4) during young fruit stage improved citrus Se content, its fruit weight and quality indices establishing these fruits as a valuable source of Se-rich food for human consumption.

Host genotype and age shape the microbial community in the rhizosphere soils of Camellia forests.

Microbiota living in the rhizosphere influences plant growth and fitness, from the opposite perspective; whether host genotypes control its root microbiota is of great interest to forest breeders and microbiologists. To improve low-yield plantations and promote sustainable management of Camellia oleifera, high-throughput sequencing was used to study the chemical properties and microbiome in rhizosphere soil of Camellia forests under three genotypes (common C. oleifera, local C. gauchowensis, and C. chekiangoleosa) and three growth stages (sapling stage at 4-year-old, primary fruit stage at 7-year-old, and full fruiting stage at 11-year-old). The results showed that the rhizosphere soil organic matter (OM), nutrient concentrations, diversity, and community composition of the microbiome were significantly varied among different Camellia genotypes. The relative abundance of symbiotic and pathotrophic fungi in the rhizosphere soil of C. chekiangoleosa was significantly higher than that of C. gauchowensis. Concentrations of OM, available phosphorus (AP), and bacterial alpha diversity increased with tree age. Fungi of Saitozyma, Mortierella, and Glomeromycota and bacteria of Burkholderia-Caballeronia-Paraburkholderia and Vicinamibacterales had potential for fertilizer development for Camellia plantation. Camellia genotypes and growth stages were significantly correlated with the rhizosphere soil pH, OM, and available potassium (AK). Soil pH and OM were key factors that affected the microbiome in the Camellia rhizosphere soils. In conclusion, tree genotypes and growth stages shaped microbial communities in Camellia rhizosphere soils, and some plant growth-promoting rhizobacteria were identified as preliminary candidates for improving Camellia plantation growth.

Reduced Fertilization and Magnesium Supplementation: Modulating Fruit Quality in Honey Pomelo (Citrus maxima (Burm.) Merr.)

The excessive use of chemical fertilizers in the Guanxi honey pomelo production area has led to severe soil acidification and magnesium (Mg) deficiency, adversely affecting pomelo fruit quality. To address this issue, an integrated nutrient optimization model crucial for ensuring the sustainable and environmentally friendly development of the Guanxi honey pomelo industry has been explored. In a three-year experiment, two fertilizer treatments were implemented: a farmer fertilizer practice (FP) and an NPK reduction plus foliar Mg fertilizer (OPT + fMg). We investigated the impact of this integrated optimized fertilization measure on pomelo fruit quality from three aspects: flavor (sugars and organic acids), nutrition (vitamin C and mineral elements), and antioxidant properties (phenolics, flavonoids, and phytic acid). The results revealed that the OPT + fMg treatment improved fruit flavor by reducing acidity (titratable acid, citric acid, and quinine), while having a minimal impact on sugar components (sucrose, fructose, and glucose). Additionally, the OPT + fMg treatment increased the total phenolics, total flavonoids, and phytic acid in the fruit peel, enhancing its potential antioxidant quality. However, the OPT + fMg treatment reduced the mineral nutrient quality (excluding calcium) in the fruit. As for the fruit developmental period, the OPT + fMg treatment significantly increased the total flavonoid concentration in the peel from the mid-expansion fruit stage, followed by notable increases in phytic acid in the peel during the mid-to-late expansion fruit stage. The total phenolic concentration in the peel significantly rose only during the late fruit development stage. The most pronounced effect was observed on phytic acid in both peel and pulp. The influence of the OPT + fMg treatment on the mineral nutrients (excluding calcium) primarily occurred during the mid-to-late expansion fruit stage. Overall, the OPT + fMg treatment significantly improved the comprehensive nutritional quality of pomelo fruit, providing valuable insights for scientifically reducing fertilizer application while enhancing fruit quality.

Differentiation of long Non-Coding RNA expression profiles in three Fruiting stages of grape

Grapes are considered a crucial fruit crop with extensive uses globally. Cluster compactness is an undesirable trait for the productivity of Yaghooti grape, and it reduces its desirability among consumers. The RNA-Seq data were analyzed in three stages of cluster development using the FEELnc software, leading to the identification of 849 lncRNAs. 183 lncRNAs were differentially expressed during cluster development stages. The GO and KEGG enrichment analyses of these lncRNAs revealed that they target 1,814 genes, including CKX, PG, PME, NPC2, and UGT. The analysis demonstrated a relationship between these lncRNAs and key processes such as grape growth and development, secondary metabolite synthesis, and resistance to both biotic and abiotic stresses. These findings, combined with molecular experiments on lncRNA interactions with other regulatory factors, could enhance Yaghooti grape quality and decrease cluster compactness.

An in-depth study of anthocyanin synthesis in the exocarp of virescens and nigrescens oil palm: metabolomic and transcriptomic analysis.

Oil palm (Elaeis guineensis Jacq.) is a very important tropical woody oil plant with high commercial and ornamental value. The exocarp of the oil palm fruit is rich in anthocyanosides and proanthocyanidins, which not only give it a bright colour, but also mark the maturity of the fruit. The study of the dynamic change pattern of anthocyanoside content and important anthocyanoside metabolism-related regulatory genes during oil palm ripening is conducive to the improvement of the ornamental value of oil palm and the determination of the optimal harvesting period of the fruits. We analyzed the virescens oil palm (AS) and nigrescens oil palm (AT) at 95 days (AS1, AT1), 125 days (AS2, AT2) and 185 days (AS3, AT3) after pollination were used as experimental materials for determining the changes in the total amount of anthocyanins as well as their metabolomics and transcriptomics studies by using the LC-MS/MS technique and RNA-Seq technique. The results showed that the total anthocyanin content decreased significantly from AS1 (119µg/g) to AS3 (23µg/g), and from AT1 (1302µg/g) to AT3 (170µg/g), indicating a clear decreasing trend during fruit development. Among them, the higher flavonoids in AS and AT included anthocyanins such as peonidin-3-O-rutinoside (H35), pelargonidin-3-O-rutinoside (H21), and cyanidin-3-O-glucoside (H7), as well as condensed tannins such as procyanidin B2 (H47), procyanidin C1 (H49), and procyanidin B3 (H48). Notably, nine genes involved in the anthocyanin biosynthetic pathway exhibited up-regulated expression during the pre-development stage of oil palm fruits, particularly during the AS1 and AT1 periods. These genes include: Chalcone synthase (CHS; LOC105036364); Flavanone 3-hydroxylase (F3H; LOC105054663); Dihydroflavonol 4-reductase (DFR; LOC105040724, LOC105048473); Anthocyanidin synthase (ANS; LOC105035842), UDP-glucose: flavonoid 3-O-glucosyltransferase (UFGT; LOC105039612); Flavonoid 3',5'-hydroxylase (F3'5'H; LOC105036086, LOC105044124, LOC105045493). In contrast, five genes demonstrated up-regulated expression as the fruits developed, specifically during the AS3 and AT3 periods. These genes include: Chalcone synthase (CHS; LOC105036921, LOC105035716); Chalcone isomerase (CHI; LOC105045978); UDP-glucose: flavonoid 3-O-glucosyltransferase (UFGT; LOC105046326); Flavonoid 3'-hydroxylase (F3'H; LOC105036086). Most of differentially expressed genes exhibited up-regulation during the early stages of fruit development, which may contribute to the elevated anthocyanin content observed in oil palm fruits of both types during the pre-developmental period. Furthermore, the expression levels of most genes were found to be higher in the AT fruit type compared to the AS fruit type, suggesting that the differential expression of these genes may be a key factor underlying the differences in anthocyanoside production in the exocarp of oil palm fruits from these two fruit types. The findings of this study provide a theoretical foundation for the identification and characterization of genes involved in anthocyanin synthesis in oil palm fruits, as well as the development of novel variations using molecular biology approaches.

Genome-wide investigation of glycoside hydrolase 9 (GH9) gene family unveils implications in orchestrating the mastication trait of Citrus sinensis fruits

Mastication trait of citrus significantly influences the fruit’s overall quality and consumer preference. The accumulation of cellulose in fruits significantly impacts the mastication trait of citrus fruits, and the glycoside hydrolase 9 (GH9) family plays a crucial role in cellulose metabolism. In this study, we successfully identified 32 GH9 genes from the Citrus sinensis genome and subsequently conducted detailed bioinformatics analyses of the GH9 family. Additionally, we profiled the spatiotemporal expression patterns of CsGH9 genes across four distinct fruit tissue types and six crucial developmental stages of citrus fruits, leveraging transcriptome data. Parallel to this, we undertook a comparative analysis of transcriptome profiles and cellulose content among diverse fruit tissues spanning six developmental stages. Furthermore, to identify the pivotal genes involved in cellulose metabolism within the GH9 family during fruit maturity, we employed correlation analysis between cellulose content and gene expression in varying tissues across diverse citrus varieties. This analysis highlighted key genes such as CsGH9A2/6 and CsGH9B12/13/14/22. Collectively, this study provides an in-depth analysis of the GH9 gene family in citrus and offers novel molecular insights into the underlying mechanisms governing the mastication trait formation in citrus fruits.

Plasticity response of desert shrubs to intense drought events at different phenophases under the context of climate change

Global climate change has led to the frequent occurrence of intense drought events in mid-latitude desert ecosystems, coupled with uneven rainfall distribution across phenophases within the year. However, the impact of intense drought events at different phenophases on plant growth and drought resistance strategies still lacks clear conclusions. We selected the typical desert semi-shrubs Artemisia ordosica as our research object, and constructed a rain shelter to simulate intense drought events (without rainfall for 30 consecutive days) during the sprouting, vegetative growth, flowering and fruiting stages. Based on this, we analyzed the differential impacts of intense drought events at different phenophases on the phenotypic characteristics (e.g. shrub height, cover, volume, specific leaf area) and functional traits (ANPP accumulation and allocation) of A. ordosica. The experiment employed a randomized complete block design with three replicates for each treatment. The results indicate that: (1) Under intense drought events at different phenophases, all phenotypic characteristic indicators of A. ordosica significantly decreased. (2) Contrary to the significant negative correlation between twig number and twig size in response to rainfall variations, under intense drought conditions, there is a significant positive correlation between the two, indicating a synergistic effect. (3) The impact of intense drought events at different phenophases on the ANPP (aboveground net primary production) accumulation of A. ordosica varied significantly. The degree of impact is as follows: the flowering and fruiting stage > the sprouting stage > the vegetative growth stage. (4) A. ordosica adapted to intense drought by increasing the proportion of reproductive growth and decreasing the proportion of vegetative growth. Our results reveal the phenotypic and functional trait plasticity response mechanisms of A. ordosica to intense droughts at different phenophases, laying a foundation for predicting the impacts of climate change on desert ecosystems.

Response of blueberry photosynthetic physiology to light intensity during different stages of fruit development.

To investigate the response of blueberry photosynthetic physiology to different light intensities during different stages of fruit development. In this study, four light intensity treatments (25%, 50%, 75% and 100% of full light) were set up to study the change rule of photosynthetic pigment content and photosynthetic characteristics of 'O'Neal' southern highbush blueberry leaves during the white fruiting stage (S1), purple fruiting stage (S2) and blue fruiting stage (S3) under different light intensity environments, and to explore the light demand and light adaptability of blueberry during different developmental stages of the fruit. The results showed that the chlorophyll and carotenoid contents of blueberry leaves showed an increasing trend with decreasing light intensity at all three stages of fruit development. The total chlorophyll content of blueberry leaves at 25% light intensity increased by 76.4% compared with CK during the blue fruiting stage; the maximum net photosynthetic rate (Pmax), light compensation point (LCP), light saturation point (LSP), rate of dark respirations (Rd), inter-cellular CO2 concentration (Ci), stomatal conductance (Gs), transpiration rate (Tr), net photosynthesis rate (Pn), and chlorophyll a/b showed a decreasing trend with decreasing light intensity. The Pn of blueberry leaves was highest under full light conditions at all three stages, and the Pn at 25% light intensity decreased by 68.5% compared with CK during the white fruiting stage Reflecting the fact that blueberries can adapt to low-light environments through increases in chlorophyll and carotenoids, but reduced light intensity significantly inhibited their photosynthesis. The photosynthetic physiology of blueberry showed a consistent pattern at all three stages, but there were some differences in the changes of photosynthetic parameters at different stages. The results of the study can provide theoretical references for the selection of sites and density regulation in blueberry production.

Genome-wide identification and expression analyses of SWEET gene family reveal potential roles in plant development, fruit ripening and abiotic stress responses in cranberry (Vaccinium macrocarpon Ait).

The sugars will eventually be exported transporter (SWEET) family is a novel class of sugar transporters that play a crucial role in plant growth, development, and responses to stress. Cranberry (Vaccinium macrocarpon Ait.) is a nutritious berry with economic importance, but little is known about SWEET gene family functions in this small fruit. In this research, 13 VmSWEET genes belonging to four clades were identified in the cranberry genome for the first time. In the conserved domains, we observed seven phosphorylation sites and four amino acid residues that might be crucial for the binding function. The majority of VmSWEET genes in each clade shared similar gene structures and conserved motifs, showing that the VmSWEET genes were highly conserved during evolution. Chromosomal localization and duplication analyses showed that VmSWEET genes were unevenly distributed in eight chromosomes and two pairs of them displayed synteny. A total of 79 cis-acting elements were predicted in the promoter regions of VmSWEETs including elements responsive to plant hormones, light, growth and development and stress responses. qRT-PCR analysis showed that VmSWEET10.1 was highly expressed in flowers, VmSWEET16 was highly expressed in upright and runner stems, and VmSWEET3 was highly expressed in the leaves of both types of stems. In fruit, the expression of VmSWEET14 and VmSWEET16 was highest of all members during the young fruit stage and were downregulated as fruit matured. The expression of VmSWEET4 was higher during later developmental stages than earlier developmental stages. Furthermore, qRT-PCR results revealed a significant up-regulation of VmSWEET10.2, under osmotic, saline, salt-alkali, and aluminum stress conditions, suggesting it has a crucial role in mediating plant responses to various environmental stresses. Overall, these results provide new insights into the characteristics and evolution of VmSWEET genes. Moreover, the candidate VmSWEET genes involved in the growth, development and abiotic stress responses can be used for molecular breeding to improve cranberry fruit quality and abiotic stress resistance.

Changes in the fruits and seeds morphometric, germination, phytochemicals content, and antioxidant capacity in seed ripening of Echinocereus stramineus

Within the cacti family, most studies have focused on the physicochemical characterization of the stems, fruits, and seeds from Mammillaria, Opuntia, Hylocereus, and Stenocereus genera. However, few information is focused on the morphological and physicochemical characterization of the stems, fruits, and seeds of other genera widely distributed in the arid and semiarid zones of the Chihuahuan desert, such as the genus Echinocereus. The objective of this study was to analyze the fruit morphology, morphometry, germination process, and phytochemical content in four stages of seed in fruit ripening from E. stramineus. Morphometric parameters were measured by picking ten fruits and sixty seeds for each ripening stage. The characterization of the germination process included the germination percentage, mean germination time, germination speed, and mean germination speed which were computed 21 days after germination. The quantification of total phenols, flavonoids, tannins, reducing sugars, protein, and antioxidant activity of seeds was determined using colorimetric approaches under basal conditions. The morphometric results revealed a negative correlation between the fruit ripening stage and total mass (r= -0.980, p = 0.020), shell mass (r= -0.986, p = 0.014), pulp mass (r = -0.979, p = 0.021), fruit length (r = -0.978, p = 0.022), fruit width (r = -0.968, p = 0.032) and fruit area (r = -0.960, p = 0.04). The germination characterization process showed a negative association between the fruit ripening stage and the seed germination percentage (r = -0.979, p = 0.021) and between the seed mean germination time and the mean germination speed (r= -0.986, p = 0.014). The content of flavonoids, reducing sugars, proteins, and antioxidant capacity showed significant differences among the four stages of fruit ripening; however, no association was found between seed phytochemical content and the ripening stage. This study provides the first data on seed phytochemicals and information on the germination process of E. stramineus seeds.

Mapping and transcriptomic profiling reveal that the KNAT6 gene is involved in the dark green peel colour of mature pumpkin fruit (Cucurbita maxima L.).

We identified a 580bp deletion of CmaKNAT6 coding region influences peel colour of mature Cucurbita maxima fruit. Peel colour is an important agronomic characteristic affecting commodity quality in Cucurbit plants. Genetic mapping of fruit peel colour promotes molecular breeding and provides an important basis for understanding the regulatory mechanism in Cucurbit plants. In the present study, the Cucurbita maxima inbred line '9-6' which has a grey peel colour and 'U3-3-44' which has a dark green peel colour in the mature fruit stage, were used as plant materials. At 5-40days after pollination (DAP), the contents of chlorophyll a, chlorophyll b, total chlorophyll and carotenoids in the 'U3-3-44' peels were significantly greater than those in the '9-6' peels. In the epicarp of the '9-6' mature fruit, the presence of nonpigmented cell layers and few chloroplasts in each cell in the pigmented layers were observed. Six generations derived by crossing '9-6' and 'U3-3-44' were constructed, and the dark green peel was found to be controlled by a single dominant locus, which was named CmaMg (mature green peel). Through bulked-segregant analysis sequencing (BSA-seq) and insertion-deletion (InDel) markers, CmaMg was mapped to a region of approximately 449.51kb on chromosome 11 using 177 F2 individuals. Additionally, 1703 F2 plants were used for fine mapping to compress the candidate interval to a region of 32.34kb. Five coding genes were in this region, and CmaCh11G000900 was identified as a promising candidate gene according to the reported function, sequence alignment, and expression analyses. CmaCh11G000900 (CmaKNAT6) encodes the homeobox protein knotted-1-like 6 and contains 4 conserved domains. CmaKNAT6 of '9-6' had a 580bp deletion, leading to premature transcriptional termination. The expression of CmaKNAT6 tended to increase sharply during the early fruit development stage but decrease gradually during the late period of fruit development. Allelic diversity analysis of pumpkin germplasm resources indicated that the 580bp deletion in the of CmaKNAT6 coding region was associated with peel colour. Subcellular localization analysis indicated that CmaKNAT6 is a nuclear protein. Transcriptomic analysis of the inbred lines '9-6' and 'U3-3-44' indicated that genes involved in chlorophyll biosynthesis were more enriched in 'U3-3-44' than in '9-6'. Additionally, the expression of transcription factor genes that positively regulate chlorophyll synthesis and light signal transduction pathways was upregulated in 'U3-3-44'. These results lay a foundation for further studies on the genetic mechanism underlying peel colour and for optimizing peel colour-based breeding strategies for C. maxima.