In this investigation, flow boiling heat transfer and hydrodynamic instability using deionized water in a minichannel with smooth and square pin fin surfaces was experimentally examined. The study is aimed to assess local and overall heat transfer coefficients, heat transfer coefficients, pressure drop and Nusselt number across various liquid mass flux ranges (50–93 kg m−2 s−1) and a constant heat flux of 46.91 kW/m2. The minichannel, with a hydraulic diameter of 2.85 mm, features a rectangular shape. Experimental testing was conducted on aluminum surface within a minichannel of dimensions 270 mm in length, 30 mm in width, and 1.5 mm height. The square pin fins are integrated at the base of the boiling surfaces, arranged in staggered form. The results revealed that the boiling heat transfer coefficient on square pin fin surfaces was approximately 88 % higher than that on smooth surfaces. Additionally, a notable increase in local heat transfer coefficient was observed for square pin fin surfaces (i.e., 34.64 kW/m2.K) compared to smooth surfaces (8.09 kW/m2.K) at the same mass flux of 50 kg/m2.s. Besides, the square pin fins surface exhibited a lower and stable pressure drop, particularly near annular flow regimes, compared to the smooth surface. Notably, the highest pressure drop observed was 4.8 kPa for the square pin fins surface, while the smooth surface experienced a higher pressure drop of 6.36 kPa, accompanied by more pronounced pressure fluctuations during annular flow.