More than 200 sediment trap samples were collected at 310 or 360m depth during 2002–2009 from the center of the 410m-deep Alfonso Basin in La Paz Bay, an arid, subtropical embayment of the southern Gulf of California. Sample splits were analyzed for total mass flux (TMF), particulate organic carbon (POC), inorganic carbon (CaCO3) and opal (biogenic silica BioSi). The lithogenic (Litho) and biogenic fluxes (Biogen), but especially the particulate organic matter (POM) and CaCO3, fluxes are relatively high compared with those recorded in a number of other coastal basins at depths less than ~500m. The average yearly Litho fluxes (mean of 133±158gm−2yr−1) are well correlated with the frequency of strong wind gusts and reflect the relative proximity of the mooring to shore and the importance of eolian transport. The sedimentation patterns are influenced by monsoonal shifts—cool temperatures and strong northerly winds in late fall and winter sustain a well-mixed deep surface layer and high lithogenic fluxes, whereas progressive heating and relatively weak southerlies in summer and fall lead to a shallower, more-stratified surface layer with lower nutrient levels, limited productivity and generally low particulate fluxes. There is considerable interannual variability in the size of the various fluxes. This is likely related to a number of regional and internal factors whose timing, intensity and interactions remain to be resolved.Although there is an inverse relationship between SST and satellite-derived net primary production (NPP) estimates, no correlation was found between NPP and the POC, CaCO3 and BioSi fluxes (r2<0.05 and p>0.05). Significant correlations (p<0.001) do exist, however, between the POC flux and the total mineral flux as well as with the CaCO3, Litho and BioSi fluxes (r=0.86, 0.82, 0.79 and 0.69, respectively). As suggested by the ballast ratio hypothesis, the strength of these correlations follows the relative density of the individual ballast components. Among the ballast minerals, the Litho fraction correlates strongly with CaCO3 (r=0.84), both fluxes being important during the windy cool season. The lithogenic fraction accounts for almost half of the total mass flux and is clearly a significant ballasting agent in this continental margin basin.