Barley Research Articles

Leveraging genomic prediction to surpass current yield gains in spring barley.

Genetic gain in Nordic spring barley varieties was estimated to 1.07% per year. Additionally, genomic predictive ability for yield was 0.61 in a population of breeding lines. Barley is one of the most important crops in Europe and meeting the growing demand for food and feed requires continuous increase in yield. Genomic prediction (GP) has the potential to be a cost-efficient tool in breeding for complex traits; however, the rate of yield improvement in current barley varieties is unknown. This study therefore investigated historical and current genetic gains in spring barley and how accounting for row-type population stratification in a breeding population influences GP results. The genetic gain in yield was estimated using historical data from field trials from 2014 to 2022, with 22-60 market varieties grown yearly. The genetic gain was estimated to 1.07% per year for all varieties, serving as a reference point for future breeding progress. To analyse the potential of using GP in spring barley a population of 375 breeding lines of two-row and six-row barley were tested in multi-environment trials in 2019-2022. The genetic diversity of the row-types was examined and used as a factor in the predictions, and the potential to predict untested locations using yield data from other locations was explored. This resulted in an overall predictive ability of 0.61 for yield (kg/ha), with 0.57 and 0.19 for the separate two-row and the six-row breeding lines, respectively. Together this displays the potential of implementing GP in breeding programs and the genetic gain in spring barley market varieties developed through GP will help in quantifying the benefit of GP over conventional breeding in the future.

Construction of a high-density genetic map using specific-locus amplified fragment sequencing and quantitative trait loci analysis for tillering related traits in Psathyrostachys juncea perennial grass

Background Russian wildrye (RWR, Psathyrostachys juncea) is an outcrossing perennial grass that plays a crucial role in foragaing and rangeland restoration due to its tiller producing capabilities, nevertheless, a genetic map has yet to be constructed due to a shortage of efficient and reliable molecular markers. This also limits the identification, localization, and cloning of economically important traits related to tiller density during breeding. Methods Therefore, this study aimed to create a F1 mapping population with 147 individual lines and their two parents, which were selected based on varying tiller densities. We then used this mapping population to conduct specific-locus amplified fragment sequencing (SLAF-seq) to generate SLAF markers and discover single nucleotide polymorphisms (SNPs). Results Initially, we generated a total of 1,438.38 million pair-end reads with an average sequencing depth of 84.92 in the maternal line, 79.34 in the parental line, and 27.05 in each F1 individual line, respectively. Following the filtering of low-depth SLAF tags, a total of 558,344 high-quality SLAFs were identified. A total of 1,519,903 SNP markers were obtained, and 62,424 polymorphic SNPs were discovered. From these, 4,644 polymorphic SNPs were selected and used for the construction of a genetic map encompassing seven linkage groups. The genetic map spanned 1,416.60 cM with an average distance of 0.31 cM between adjacent markers. Comparative analysis between the seven linkage groups of RWR SLAF tag and the whole-genome sequences in barley (Hordeum vulgare L.) revealed homology values ranging from 17.5% to 34.6%, and the collinearity between the RWR linkage groups and the barley homology groups ranged from 0.6787 to 0.9234, with an average value of 0.8158. Additionally, 143 significant quantitative trait locus (QTLs) with Logarithm of Odds (LOD) value greater than 2.5 for five tiller related traits were detected using three consecutive years of phenotypic trait data from the F1 population, further verifying the map’s reliability.

Barley vulnerability to climate change: perspectives for cultivation in South America.

Barley (Hordeum vulgare) is a globally significant cereal crop, widely used in both food production and brewing. However, it is particularly vulnerable to climate change, especially extreme temperature fluctuations, which can severely reduce yields. To address this challenge, a detailed climate zoning study was conducted to assess the suitability of barley production areas across South America, considering both current conditions and future climate scenarios from the Intergovernmental Panel on Climate Change (IPCC). The study utilized historical climate data along with projections from the CMIP6 IPSL-CM6A-LR model for the period 2021-2100. Several indices, such as evapotranspiration, were calculated, and factors like soil composition and topography were integrated into the classification of regions based on their agricultural potential. Critical variables in this assessment included temperature, precipitation, and water or thermal excess. The results showed that 6.59% of South America's territory is currently suitable for barley cultivation without additional irrigation, with these regions concentrated primarily in temperate southern areas. In contrast, 18.62% of the region is already unsuitable due to excessive heat. Projections under future climate scenarios indicate a shrinking of suitable areas, alongside an expansion of unsuitable regions. In the worst-case scenario, only 1.48% of the territory would remain viable for barley farming. These findings emphasize the crop's vulnerability to climate change, underscoring the urgency of developing agricultural adaptation strategies. The predicted contraction in suitable barley cultivation areas demonstrates the profound impact of climate change on agriculture and highlights the need for proactive measures to ensure sustainable barley production in South America.

Influence of electron radiation of spring barley seeds on phytopathogenic microflora

Under the conditions of a model pot experiment, the effect of electron irradiation on the phytopathogenic microflora of plant roots and leaves was studied. The studies were carried out on spring barley seeds of the Vladimir variety (reproduction 1), affected by helminthosporiosis (pathogen Bipolaris sorokiniana Shoem.), (natural infectious background). This pathogen causes root rot and leaf spot. The grain was irradiated using a wide-aperture electron accelerator “Duet” with a mesh plasma cathode and the output of the generated beam of a large cross-section into the atmosphere in doses of 1, 2, 3, 4 and 5 kGy. The total administered dose was increased by changing the number of pulses. The radiation dose rate was 100 Gy/pulse, the electron energy was 130 keV (mode 1) and 160 keV (mode 2). The depth of dose absorption did not exceed 300 μm. Based on the conducted studies on the effect of electron irradiation on root rot (pathogen Bipolaris sorokiniana) of spring barley, it was noted that in the tillering and heading phases, when irradiating seed material with a dose of 2 kGy in mode 1 (130 keV), the disease incidence and prevalence decreased by more than 1.5 times compared to the non-irradiated control. In the phase of full grain maturity, the highest value of root infestation (45–50%) and prevalence (95–100%) of Bipolaris sorokiniana were recorded, but statistically significant differences between the irradiated variants and the control were absent. The records of the damage of vegetative plants showed that in the tillering phase, for all irradiation variants in mode 1, the degree of damage to leaves 1–3 increased by 23% compared to the control, and in the heading phase, the degree of damage to the upper leaves (1–3) exceeded the control when irradiated at doses of 2–5 kGy (mode 1) and 1–5 kGy (mode 2) – 2.1–2.8 times for 1 leaf, 1.9–2.0 times for 2 leaves and 1.2 times for 3 leaves.

Changes in starch properties during malting and their correlations with the malting quality of multiple barley cultivars

AbstractBackground and ObjectiveThere is still a lack of information about detailed dynamic changes in starch properties during malting among multiple barley varieties and correlations of starch properties with malting qualities. In this work, compositional, physicochemical, morphological, and structural properties of starches from four barley varieties at six time points across the malting process were first investigated to better understand the starch modification of barley malting. Furthermore, a total of 30 barley varieties were used to investigate the relationship between malting qualities and starch properties. The results provide a reference for breeding high‐malting quality barley based on starch properties.FindingsSignificant decreases in starch contents, paste viscosities, relative crystallinity, as well as the ratio of 1045/1022 cm−1 of starch, were exhibited, while comparatively small changes were found in the thermal parameters during malting. Amylose and amylopectin polymers were both hydrolyzed in malting. After malting, pits and holes were discovered on the surface of some starch granules. Four parameters of peak viscosity (PV), breakdown, peak time (PeT), and pasting temperature (PT) had significant correlations with diastatic power (DP), while the above four indicators together with amylose content, total starch content, onset temperature, peak temperature, and swelling power had significant correlations with malt extract (ME).ConclusionsThe trend of changes in starch properties among all four genotypes was similar. However, the variety with better malting quality showed a greater degree of measurements in some starch characters. Starch properties are mainly related to the two malting quality indicators of DP and ME.Significance and NoveltyPV, breakdown, PeT, and PT had significant correlations with malting qualities.

Metabolomics Study by Amino and Organic Acid Profiling Analyses in Pre- and Post-Milling Barley Using Gas Chromatography-Tandem Mass Spectrometry

Barley (Hordeum vulgare) is a major cereal grain grown in temperate climates globally and provides various nutrients in a peeled form after milling. However, milling causes changes in nutritional composition, including metabolites. Thus, a metabolomics study was conducted to monitor the changes in nutritional composition before and after the milling of Hordeum vulgare seeds (Saechalssal, Hinchalssal, and Yeongbaekchal) focusing on the development and application of new analytical methods for organic acids (OA) and amino acids (AA). Profiling analyses of OAs and AAs were performed using GC-MS/MS. This analytical method showed good linearity (r ≥ 0.995) with limit of detection (0.1 ng, 21.2 ng) and limit of quantitation (0.3 ng, 63.6 ng), respectively. Repeatability varied from 0.1 to 12.4 (% RSD) and accuracy varied from –12.3 to 14.8 (% RE), respectively. Altered levels of 36 metabolites (16 OAs, 20 AAs) were monitored post-milling and compared with pre-milling in the three Hordeum vulgare cultivars. Radar plots of OAs and AAs to corresponding mean levels of each pre-milling group in the three Hordeum vulgare cultivars were easily distinguished from those in each post-milling group. The pre-and post-milling groups of the three Hordeum vulgare cultivars were completely separated by partial least square discriminant analysis, and the lysine, cysteine, glutamic acid, asparagine, 4-hydroxyphenylacetic acid, and citric acid were significantly different. Therefore, this study will be useful for monitoring altered metabolites following milling and discrimination of varieties.

Disintegration of commercial single-use plastics from synthetic and biobased origins and effects on plant growth

Many single–use plastic (SUP) options made of synthetic polymers, bio-based materials, and blends of both are available in the market and used in large quantities. The disintegration of eleven commercial SUP, marketed in Mexico as cups and plates, was investigated in an aerobic home compost environment at a laboratory scale over 180 days. An evaluation of chemical changes, surface morphology, and thermal and mechanical properties was conducted to ascertain the original composition of SUP and the progression of disintegration in samples that are challenging to clean from soil contamination. Furthermore, the impact of residual compost on barley (Hordeum vulgare) plant growth and its correlation with the leaching of heavy metals were explored. The bio-based SUP, but not those made of expanded polystyrene foam, showed a correlation between the disintegration degree (measured by weight loss into particles <2 mm) and a decrease in functional groups (observed by FT-IR), mechanical-thermal stability loss, and surface wear over disintegration time. For instance, the highest disintegration at 180 days was approximately 70% for wheat bran and palm leaf plates, followed by wheat plates and cellulose-PLA cups (60%). In addition to the components listed by the manufacturers, the FT-IR and DSC analysis revealed the presence of polyethylene and polypropylene in cellulose cups and sugarcane plates. These components, impede disintegration but contribute to preserving thermal resistance and hydrophobicity during utilization. Compost derived from expanded polystyrene foam SUP, with 90 days of disintegration, was rich in zinc and chromium and significantly decrease in the root length of the barley plant compared to the control. This demonstrates the necessity of considering the impact of the leaching of additives and secondary microplastics into the environment.

Genome-wide characterization and evolution analysis of miniature inverted-repeat transposable elements in Barley (Hordeum vulgare)

Miniature inverted-repeat transposable elements (MITEs) constitute a class of class II transposable elements (TEs) that are abundant in plant genomes, playing a crucial role in their evolution and diversity. Barley (Hordeum vulgare), the fourth-most important cereal crop globally, is widely used for brewing, animal feed, and human consumption. However, despite their significance, the mechanisms underlying the insertion or amplification of MITEs and their contributions to barley genome evolution and diversity remain poorly understood. Through our comprehensive analysis, we identified 32,258 full-length MITEs belonging to 2,992 distinct families, accounting for approximately 0.17% of the barley genome. These MITE families can be grouped into four well-known superfamilies (Tc1/Mariner-like, PIF/Harbinger-like, hAT-like, and Mutator-like) and one unidentified superfamily. Notably, we observed two major expansion events in the barley MITE population, occurring approximately 12-13 million years ago (Mya) and 2-3 Mya. Our investigation revealed a strong preference of MITEs for gene-related regions, particularly in promoters, suggesting their potential involvement in regulating host gene expression. Additionally, we discovered that 7.73% miRNAs are derived from MITEs, thereby influencing the origin of certain miRNAs and potentially exerting a significant impact on post-transcriptional gene expression control. Evolutionary analysis demonstrated that MITEs exhibit lower conservation compared to genes, consistent with their dynamic mobility. We also identified a series of MITE insertions or deletions associated with domestication, highlighting these regions as promising targets for crop improvement strategies. These findings significantly advance our understanding of the fundamental characteristics and evolutionary patterns of MITEs in the barley genome. Moreover, they contribute to our knowledge of gene regulatory networks and provide valuable insights for crop improvement endeavors.

A Study on the Allelopathic Effects of Wild Barley (Hordeum spontaneum) Residue Incorporated with Soil on Growth of Some Plant species

This study examines the allelopathic effects of wild barley (Hordeum spontaneum) on the growth and yield of bread wheat (Triticum aestivum), barley (Hordeum vulgare), and wild barley (Hordeum spontaneum). The experiment was conducted in a greenhouse at Shamamar-Hawler/ Kurdistan Region of Iraq using a complete randomized factorial design (CRD) within 3 replications. The roots, shoots, and seeds of wild barley were dried, powdered, and added to the soil at different concentrations (0%, 10%, 20%, 30%, and 40%) in 500 g pots. Each pot was planted with 5 seeds, which were later reduced to 3 seedlings. Growth parameters such as shoot and root lengths, dry weights, number of tillers, weight of spikes, seeds number per plant, and biological yield was measured. The results indicated significant effects of wild barley residues on the studied crops. Wheat showed the highest roots, shoots and total lengths were (29.56 cm, 17.05 cm and 46.58 cm, respectively) and the highest shoots and roots dry weights were (0.24 g and 0.30 g). Barley showed the highest number of stems (1.96) but the lowest shoots and dry weights of roots were (0.11 g and 0.23 g). Wild barley had the highest biological weight and harvest index (HI). Among the plant parts, seed extracts significantly enhanced growth parameters, while roots and shoots extract had the greatest inhibitory effects as wild barley residue concentrations increased. Nevertheless, the HI showed a decline as the concentrations increased, suggesting a detrimental effect on growth efficiency. The study shows the potential of wild barley as a bio-herbicide, emphasizing its allelopathic effects. This suggests that agricultural practices should be carefully considered to maximize the efficiency of crops. Incorporating these results into precision agriculture can greatly improve crop management and increase yield.

Adaptability and yield of a new cultivar of spring barley Yarushnik

Adaptability and yield of a new cultivar of spring barley Yarushnik

Distribution and redistribution of salt ions in saline soils with shallow groundwater table

Saline water resources are more abundant than freshwater. Bringing these resources into sustainable, productive use will offer opportunities to reduce competition for freshwater resources, especially in arid and semi-arid areas where freshwater is scarce. Hence, the primary objective of this study was to elucidate the dynamics of salt ions in saline profiles of various soil types (sandy Clovelly and sandy loam Bainsvlei) under malt barley cultivation across 2 seasons where no leaching between the seasons took place. Results of this lysimeter study investigating increasing irrigation salinity (ECi) set at 1.5, 4.5, 6, 9, and 12 dSꞏm−1 over 2 seasons were used to explore ion dynamics of a saline environment. The lysimeter set-up included a saline constant (1.2 m) groundwater table with its salinity corresponding to ECi. Findings showed that ion concentrations are higher closer to the water source only in the Bainsvlei soil and remain variable in the Clovelly soil. Salt dynamics were more predictable in sandy loam soil than in sandy soil, making management of saline sandy soils far more challenging when leaching is not possible. Therefore, our hypothesis that the absence of leaching between seasons will lead to a differentiated progressive accumulation of salt ions in the soil profile, with variable effects on the soil depending on soil texture, was true. We conclude that the desalinized zone, which we determined to be at a depth of 600 mm, should be used to guide crop selection. Furthermore, in addition to the apparent provision for leaching of saline profiles, fertilization should target restoring ion balances, especially provisioning for calcium deficiencies. Both soils were prone to nutritional disorders, most especially calcium deficiency. Therefore, in addition to provision for leaching saline profiles, fertilization should target calcium provisioning for crop production in arid saline environments.

Proteomic identification of apoplastic proteins from rice, wheat, and barley after Magnaporthe oryzae infection

The fungal pathogen Magnaporthe oryzae causes devastating blast disease in various cereals, including rice (Oryza sativa), wheat (Triticum aestivum), maize (Zea mays), and barley (Hordeum vulgare). Despite previous reports on fungal host specificity, the mechanisms underlying differential host infection strategies remain unclear. This study aimed to identify differentially abundant proteins (DAPs) in the apoplast of rice, barley, and wheat following infection with two M. oryzae pathovars using liquid chromatography-tandem mass spectrometry (LC–MS/MS). LC–MS/MS analysis revealed an enrichment of both M. oryzae and host proteins in the apoplast during the compatible reaction compared to the incompatible reaction. DAPs from M. oryzae involved in the host interaction included secreted extracellular enzymes (e.g., hydrolases), which were significantly increased in the M. oryzae Oryzae (MoO)-infected rice apoplast. Among host proteins, the proportion of protein-modifying enzymes increased in the M. oryzae Triticum (MoT)-infected rice and MoO-infected wheat apoplastic fluids, particularly rice glycosidases, peroxidases, and serine proteases, as well as wheat serine proteases. Furthermore, DAPs from MoL-infected rice were enriched in carbohydrate metabolism, suggesting that carbohydrate metabolism-related proteins may play a vital role in rice resistance to MoL. Additionally, protein-modifying and cytoskeletal proteins, as well as stress-responsive proteins, were enriched in the MoO-infected wheat apoplastic fluid. Finally, DAPs from both MoO- and MoL-infected barley were enriched in hydrogen peroxide catabolism, suggesting that peroxidases may be vital for barley resistance to M. oryzae. The identification of DAPs from both M. oryzae strains and the three host plants offers valuable insights into the host specificity mechanisms of M. oryzae in cereal crops.

Cathepsin B- and L-like Protease Activities Are Induced During Developmental Barley Leaf Senescence

Leaf senescence is a developmental process allowing nutrient remobilization to sink organs. Previously cysteine proteases have been found to be highly expressed during leaf senescence in different plant species. Using biochemical and immunoblotting approaches, we characterized developmental senescence of barley (Hordeum vulgare L. var. ‘GemCraft’) leaves collected from 0 to 6 weeks after the onset of flowering. A decrease in total protein and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) large subunits occurred in parallel with an increase in proteolytic activity measured using the fluorogenic substrates Z-RR-AMC, Z-FR-AMC, and casein labeled with fluorescein isothiocyanate (casein-FITC). Aminopeptidase activity detected with R-AMC peaked at week 3 and then decreased, reaching a low level by week 6. Maximal proteolytic activity with Z-FR-AMC and Z-RR-AMC was detected from pH 4.0 to pH 5.5 and pH 6.5 to pH 7.4, respectively, while two pH optima (pH 3.6 to pH 4.5 and pH 6.5 to pH 7.4) were found for casein-FITC. Compound E-64, an irreversible cysteine protease inhibitor, and CAA0225, a selective cathepsin L inhibitor, effectively inhibited proteolytic activity with IC50 values in the nanomolar range. CA-074, a selective cathepsin B inhibitor, was less potent under the same experimental conditions, with IC50 in the micromolar range. Inhibition by leupeptin and phenylmethylsulfonyl fluoride (PMSF) was weak, and pepstatin A, an inhibitor of aspartic acid proteases, had no effect at the concentrations studied (up to 0.2 mM). Maximal proteolytic activity with the aminopeptidase substrate R-AMC was detected from pH 7.0 to pH 8.0. The pH profile of DCG-04 (a biotinylated activity probe derived from E-64) binding corresponded to that found with Z-FR-AMC, suggesting that the major active proteases are related to cathepsins B and L. Moreover, immunoblotting detected increased levels of barley SAG12 orthologs and aleurain, confirming a possible role of these enzymes in senescing leaves.

PERFORMANCE AND STABILITY FOR GRAIN YIELD AND YIELD COMPONENTS OF SIX-ROW BARLEY CULTIVARS UNDER VARIOUS ENVIRONMENTS IN KURDISTAN REGION-IRAQ

This study was aimed to investigate yield and yield components of barley (Hordeum vulgare L.) under six different environmental conditions E1- E6 including two sowing date S1 and S2 at three location (Qlyasan, Kanipanka, Chamchamal) in KIR using 10 barley cultivars (C), Numar, Rafidain, Al-warka, Al-Amal, IPPA 265, IPPA 99, Arivat (local), Samir, Qalay 1, and Ukraine (Common cultivated). Experiment was applied using to complete randomized blocks design. The stability analysis was done using the linear regression model. The differences between the means were compared through Duncan multiple range test. The results was revealed that the mean sum of squares due to cultivars, environment, and C x E were highly significant for all studied characters. The cultivar Numar which had highest mean grain yield (3.559) th-1, high bi value1.96 and low S2di 0.058) considered optimal yield stability cultivar. The combination C1E3 gave the top grain yielding (6.91 th-1) due to very high GS, high NS and good TGW performances.

Acidity and Salinization of Soil Following the Application of Ashes from Biomass Combustion Under Different Crop Plant Species Cultivation

Ashes from biomass combustion (BAs) are a valuable source of plant nutrients, making them suitable for fertilizing crops. BAs also contain components that directly affect soil environmental conditions, leading to improved growth and development of plants. Their deacidifying properties allow BAs to serve as a substitute for calcium fertilizers. However, they contain substantial amounts of components that can increase soil salinity, which can have negative effects. The aim of this study was to assess the impact of BAs on changes in pH and salinity of haplicluvisol soil under the cultivation of various plant species. The study also analyzed the effects of BAs on the content of total forms of calcium (Ca), magnesium (Mg), potassium (K), and sodium (Na) in the soil. The BAs used in the experiment were sourced from a combined heat and power plant that combusts forest and agricultural biomass. These BAs are distributed as a product for fertilizing agricultural land. However, their application is not subjected to further monitoring. The results indicated that the application of different doses of BAs significantly affected the pH of the analyzed soil. Compared to control objects, a significant increase in pH was observed, with these changes dependent on the species of the cultivated plant. Additionally, even the smallest doses of BAs caused an increase in the electrolytic conductivity (EC) of soil solutions, which serves as a measure of soil salinity. Despite the increase in the average EC value, the application of BAs did not alter the salinity class. The use of BAs also significantly influenced other analyzed parameters. An increase in the average content of total forms of Ca, Mg, K, and Na in the soil was observed, along with a higher degree of soil saturation with alkaline cations, compared to the control and the soil condition before the experiment. The changes in the analyzed soil parameters were significantly influenced not only by the different doses of BAs but also by the species of the cultivated plant. The greatest fluctuations in the obtained values were observed in soil under winter rape cultivation, while the smallest fluctuations were noted in soil under spring barley and potato cultivation.

Inactivation Efficiency of Bacillus atrophaeus Spores on Seeds of Barley, Wheat, Lupine and Rapeseed by Direct Cold Atmospheric Pressure Plasma

The objective of this study was to evaluate the antimicrobial effect of direct cold atmospheric plasma (CAPP) treatment for pre-harvest application using four different crop species: Hordeum vulgare L. (barley), Triticum aestivum L. (wheat), Brassica napus L. (rapeseed) and Lupinus angustifolius L. (lupine). The model bacterium Bacillus atrophaeus served as a proxy for spore-forming plant pathogens on the seed surface. After semi-dry inoculation of spores onto the seeds, treatment with two different plasma sources, a volume-dielectric barrier discharge and a corona discharge, and different exposure times was carried out. Subsequently, recovery of viable spores from the seeds’ surfaces was performed. Moreover, seed viability was determined based on maximum germination, as well as water contact angle as a measure for seed surface hydrophilicity. Direct CAPP treatment was efficient in reducing viable spores of B. atrophaeus with no significant differences between the plasma sources, reaching a mean inactivation of 1 log10 CFU/mL across all treatment times and crops species. Maximum germination of seeds was not negatively affected under any treatment condition. Seed hydrophilicity was increased for both plasma sources tested. Overall, this study provides valuable information on the efficiency of direct CAPP treatment of seeds with the purpose of seed hygienization with the premise of unaltered seed vitality and evaluates the potential application in comparison with previous investigated CAPP methods.

Radiation Limits the Yield Potential of Main Crops Under Selected Agrivoltaic Designs—A Case Study of a New Shading Simulation Method

Agrivoltaics (APVs) represent a growing technology in Europe that enables the co-location of energy and food production in the same field. Photosynthesis requires photosynthetic active radiation, which is reduced by the shadows cast on crops by APV panels. The design of the module rows, material, and field orientation significantly influences the radiation distribution on the ground. In this context, we introduce an innovative approach for the effective simulation of the shading effects of various APV designs. We performed an extensive sensitivity analysis of the photovoltaic (PV) geometry influence on the ground-incident radiation and crop growth of selected cultivars. Simulations (2013–2021) for three representative arable crops in eastern Austria (winter wheat, spring barley, and maize) and seven different APV designs that only limited to the shading effect showed that maize and spring barley experienced the greatest annual above-ground biomass and grain yield reduction (up to 25%), with significant differences between the APV design and the weather conditions. While spring barley had similar decreases within the years, maize was characterized by high variability. Winter wheat had only up to a 10% reduction due to shading and a reduced photosynthetic performance. Cold/humid/cloudy weather during the growing season had more negative yield effects under APVs than dry/hot periods, particularly for summer crops such as maize. The lowest grain yield decline was achieved for all three crops in the APV design in which the modules were oriented to the east at a height of 5 m and mounted on trackers with an inclination of +/−50°. This scenario also resulted in the highest land equivalent ratios (LERs), with values above 1.06. The correct use of a tracker on APV fields is crucial for optimizing agricultural yields and electricity production.

Comprehensive analysis of transcription factor binding sites and expression profiling of rice pathogenesis related genes (OsPR1)

Pathogenesis-related (PR) proteins, found in plants, play a crucial role in responding to both biotic and abiotic stresses and are categorized into 17 distinct families based on their properties and functions. We have conducted a phylogenetic analysis of OsPR1 genes (rice PR1 genes) in conjunction with 58 putative PR1 genes identified in Brachypodium distachyon, Hordeum vulgare, Brassica rapa, and Zea mays through BLASTP predictions. We extensively investigated the responses of the remaining 11 rice PR1 genes, using OsPR1a as a reference, under various stress conditions, including phytohormone treatments (salicylic acid and brassinosteroid [BR]), wounding, and heat stress (HS). In rice, of the 32 predicted OsPR1 genes, 12 have been well-characterized for their roles in disease resistance, while the functions of the remaining genes have not been studied extensively. In our study, we selected an additional 11 OsPR1 genes for further analysis and constructed a phylogenetic tree based on the presence of a 10-amino-acid-long conserved motif within these proteins. The phylogenetic analysis revealed that both OsPR1a from earlier studies and OsPR1-74 from our current study belong to the same clade. These genes consistently exhibit upregulation in response to diverse stress treatments such as biotic stress and abiotic stresses such as heat, drought, and salinity, indicating their potential roles in enhancing stress tolerance in rice. Significantly, this study delves into the previously unexplored role of OsPR1 genes in responding to Brassinosteroid (BR) and heat stress (HS) treatments, confirming their involvement in stress responses through qRT-PCR analysis. We found that seven genes were upregulated by EBR treatment. During heat stress (HS), six and seven genes were upregulated at 1hand 4h HS, respectively. The remaining genes OsPR1-22 and OsPR1-75 were upregulated at 1h but downregulated at 4h HS and under EBR treatment. In contrast, OsPR1-76 was upregulated at both 1h and 4h HS, but downregulated under EBR treatment. Promoters of PR1 genes in rice and other crops are rich in transcription factor binding sites (TFBSs) and feature a conserved Cysteine-rich secretory protein (SCP or CAP) motif. This study advances our understanding of PR1 gene regulation and its potential to enhance stress tolerance in rice.

Isolation, Identification, and Application of Endophytic Fungi from Lavandula stoechas L.: Mitigating Salinity Stress in Hydroponic Winter Cereal Fodder

Soil and irrigation water salinity is a growing global problem affecting farmland, due to poor agricultural practices and climate change, leading to reduced crop yields. Given the limited amount of arable land and the need to boost production, hydroponic systems offer a viable solution. Additionally, endophytic fungi have been shown to mitigate salinity effects through symbiosis with plants. This study evaluated three endophytic fungi isolated from Lavandula stoechas L. in the grasslands of Extremadura (i.e., Diplodia corticola L11, Leptobacillium leptobactrum L15, and Cladosporium cladosporioides L16) for their ability to improve hydroponic forage production under saline conditions. In vitro experiments were conducted assessing plant growth promotion and fungal growth under salinity, followed by research evaluating the impact of fungal inoculation on hydroponic wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) forages irrigated with NaCl solutions (0, 100, and 200 mM). The results showed improved fungal growth and production of plant growth-promoting substances, which could explain the improved plant germination, shoot and root length, fresh and dry weight, and yield of inoculated plants growing under salinity. Plants inoculated with L15 or L16 showed the best performance overall. L15 demonstrated broader bioactivity in vitro, potentially explaining its superior performance in both wheat and barley growth. Conversely, L16 was more effective in barley, while L11 was beneficial in wheat but detrimental in barley. This study provides a preliminary exploration of the capabilities of these fungi and their optimization for hydroponic forage production.

Increasing nitrogen use efficiency in agronomically important plants: An insight into gene characteristics on a genome-wide scale in barley

Nitrogen (N) is a critical element for plant growth and development. Hence, improving nitrogen use efficiency (NUE) is vital for reducing costs and the environmental impact of agricultural practices. Understanding the genetic control of N metabolism is crucial to improve NUE, especially in agronomically important plants, such as barley (Hordeum vulgare).Using bioinformatics and functional genomics tools, we identified and characterized sixteen barley nitrogen metabolism-related gene families (HvNMGs) on a genome-wide scale, analysing gene features and evolution. These genes, located on six of seven barley chromosomes, are highly conserved in plants (including barley, rice, and Arabidopsis), as shown by phylogenetic analysis. We further explored the evolutionary relationships of NMGs through a genome-to-genome synteny analysis, which indicated higher conservation of NMGs between barley and other monocots, suggesting that these orthologous pairs predate species divergence. Protein-protein interaction analyses revealed that all of the HvNMGs show interactions, mainly with each other. The H. vulgare miRNAs target sites (hvu-miR) prediction identified six hvu-miR in 4 HvNMGs (HvGABA-T2, HvALDH10-1, HvALDH10-2 and HvARGAH), indicating their potential involvement in stress responses. The expression patterns analysis of publicly available RNA-seq data revealed that HvNMGs are expressed in all developmental stages of barley, and they respond to different stress conditions, indicating their essential role in plant growth, development and stress response. The organ-specific expression analysis, conducted using qPCR, of HvNMGs revealed higher expression of HvNiR and HvNRs in the leaf and significantly higher expression of HvARGAH and HvALDH10 in the spike than in other tissues, showing that some of the genes may be particularly important in some tissues than others. This data provides a foundation for understanding HvNMG function and could be used to improve barley yield by enhancing NUE — an important goal for both crop productivity and environmental sustainability.