Spectroscopic Properties Research Articles

FROG: Exploiting all-atom molecular dynamics trajectories to calculate linear and non-linear optical responses of molecular liquids within Dalton's QM/MM polarizable embedding scheme.

Quantum mechanical/molecular mechanics (QM/MM) methods are interesting to model the impact of a complex environment on the spectroscopic properties of a molecule. In this context, a FROm molecular dynamics to second harmonic Generation (FROG) code is a tool to exploit molecular dynamics trajectories to perform QM/MM calculations of molecular optical properties. FROG stands for "FROm molecular dynamics to second harmonic Generation" since it was developed for the calculations of hyperpolarizabilities. These are relevant to model non-linear optical intensities and compare them with those obtained from second harmonic scattering or second harmonic generation experiments. FROG's specificity is that it is designed to study simple molecular liquids, including solvents or mixtures, from the bulk to the surface. For the QM/MM calculations, FROG relies on the Dalton package: its electronic-structure models, response theory, and polarizable embedding schemes. FROG helps with the global workflow needed to deal with numerous QM/MM calculations: it permits the user to separate the system into QM and MM fragments, to write Dalton's inputs, to manage the submission of QM/MM calculations, to check whether Dalton's calculation finished successfully, and finally to perform averages on relevant QM observables. All molecules within the simulation box and several time steps are tackled within the same workflow. The platform is written in Python and installed as a package. Intermediate data such as local electric fields or individual molecular properties are accessible to the users in the form of Python object arrays. The resulting data are easily extracted, analyzed, and visualized using Python scripts that are provided in tutorials.

The Butterfly Effect: Multifaceted Consequences of Sensitizer Concentration Change in Phase Transition-based Luminescent Thermometer of LiYO2:Er3+,Yb3.

In response to the ongoing quest for new, highly sensitive upconverting luminescent thermometers, this article introduces, for the first time, upconverting luminescent thermometers based on thermally induced structured phase transitions. As demonstrated, the transition from the low-temperature monoclinic to the high-temperature tetragonal structures of LiYO2:Yb3+,Er3+ induces multifaceted modification in the spectroscopic properties of the examined material, influencing the spectral positions of luminescence bands, energy gap values between thermally coupled energy levels, and the red-to-green emission intensities ratio. Moreover, as illustrated, both the color of the emitted light and the phase transition temperature (from 265 K, for LiYO2:Er3+, 1%Yb3+, to 180 K, for 10%Yb3+), and consequently, the thermometric parameters of the luminescent thermometer can be modulated by the concentration of Yb3+ sensitizer ions. Establishing a correlation between the phase transition temperature and the mismatch of ion radii between the host material and dopant ions allows for smooth adjustment of the thermometric performance of such a thermometer following specific application requirements. Three different thermometric approaches were investigated using thermally coupled levels (SR = 1.8%/K at 180 K for 1%Yb3+), green to red emission intensities ratio (SR = 1.5%/K at 305 K for 2%Yb3+), and single band ratiometric approach (SR = 2.5%/K at 240 K for 10%Yb3+). The thermally induced structural phase transition in LiYO2:Er3+,Yb3+ has enabled the development of multiple upconverting luminescent thermometers. This innovative approach opens avenues for advancing the field of luminescence thermometry, offering enhanced relative thermal sensitivity and adaptability for various applications.

2-in-1 Phase Space Sampling for Calculating the Absorption Spectrum of the Hydrated Electron.

The investigation of vibrational effects on absorption spectrum calculations often employs Wigner sampling or thermal sampling. While Wigner sampling incorporates zero-point energy, it may not be suitable for flexible systems. Thermal sampling is applicable to anharmonic systems yet treats nuclei classically. The application of generalized smoothed trajectory analysis (GSTA) as a postprocessing method allows for the incorporation of nuclear quantum effects (NQEs), combining the advantages of both sampling methods. We demonstrate this approach in computing the absorption spectrum of a hydrated electron. Theoretical exploration of the hydrated electron and its embryonic forms, such as water cluster anions, poses a significant challenge due to the diffusivity of the excess electron and the continuous motion of water molecules. In many previous studies, the wave nature of atomic nuclei is often neglected, despite the substantial impact of NQEs on thermodynamic and spectroscopic properties, particularly for hydrogen atoms. In our studies, we examine these NQEs for the excess electrons in various water systems. We obtained structures from mixed classical-quantum simulations for water cluster anions and the hydrated electron by incorporating the quantum effects of atomic nuclei with the filtration of the classical trajectories. Absorption spectra were determined at different theoretical levels. Our results indicate significant NQEs, red shift, and broadening of the spectra for hydrated electron systems. This study demonstrates the applicability of GSTA to complex systems, providing insights into NQEs on energetic and structural properties.

Evolution of structure and spectroscopic properties of a new 1,3-diacetylpyrene polymorph with temperature and pressure.

A new polymorph of 1,3-diacetylpyrene has been obtained from its melt and thoroughly characterized using single-crystal X-ray diffraction, steady-state UV-Vis spectroscopy and periodic density functional theory calculations. Experimental studies covered the temperature range from 90 to 390 K and the pressure range from atmospheric to 4.08 GPa. Optimal sample placement in a diamond anvil cell according to our previously presented methodology ensured over 80% data coverage up to 0.8 Å for a monoclinic sample. Unrestrained Hirshfeld atom refinement of the high-pressure crystal structures was successful and anharmonic behavior of carbonyl oxygen atoms was observed. Unlike the previously characterized polymorph, the structure of 2°AP-β is based on infinite π-stacks of antiparallel 2°AP molecules. 2°AP-β displays piezochromism and piezofluorochromism which are directly related to the variation in interplanar distances within the π-stacking. The importance of weak intermolecular interactions is reflected in the substantial negative thermal expansion coefficient of -55.8 (57) MK-1 in the direction of C-H...O interactions.

Structure and Spectroscopic Insights for CH3PCO Isomers: A High-Level Quantum Chemical Study.

The exploration of phosphorus-bearing species stands as a prolific field in current astrochemical research, particularly within the context of prebiotic chemistry. Herein, we have employed high-level quantum chemistry methodologies to predict the structure and spectroscopic properties of isomers composed of a methyl group and three P, C, and O atoms. We have computed relative and dissociation energies, as well as rotational, rovibrational, and torsional parameters using the B2PLYPD3 functional and the explicitly correlated coupled cluster CCSD(T)-F12b method. Based upon our study, all the isomers exhibit a bent heavy atom skeleton with CH3PCO being the most stable structure, regardless of the level theory employed. Following in energy, we found four high-energy isomers, namely, CH3OCP, CH3CPO, CH3COP, and CH3OPC. The computed adiabatic dissociation energies support the stability of all [CH3, P, C, O] isomers against fragmentation into CH3 and [P, C, O]. Torsional barrier heights associated with the methyl internal rotation for each structure have been computed to evaluate the occurrence of possible A-E splittings in the rotational spectra. For the most stable isomer, CH3PCO, we found a V3 barrier of 82 cm-1, which is slightly larger than that obtained experimentally for the N-counterpart, CH3NCO, yet still very low. Therefore, the analysis of its rotational spectrum can be anticipated as a challenging task owing to the effect of the CH3 internal rotation. The complete set of spectroscopic constants and transition frequencies reported here for the most stable isomer, CH3PCO, is intended to facilitate eventual laboratory searches.

The Role of the Unbinding Cycle on the Coordination Abilities of the Bi-Cyclopeptides toward Cu(II) Ions

Bicyclic peptides have attracted the interest of pharmaceutical companies because of their remarkable properties, putting them on a new path in medicine. Their conformational rigidity improves proteolytic stability and leads to rapid penetration into tissues via any possible route of administration. Moreover, elimination of renal metabolism is of great importance, for example, for people with a history of liver diseases. In addition, each ring can function independently, making bicyclic peptides extremely versatile molecules for further optimization. In this paper, we compared the potentiometric and spectroscopic properties studied by UV–vis, MCD, and EPR of four synthetic analogues of the bi-cyclic peptide c(PKKHP-c(CFWKTC)-PKKH) (BCL). In particular, we correlated the structural and spectral properties of complexes with coordinating abilities toward Cu(II) ions of MCL1 (Ac-PKKHPc(CFWKTC)PKKH-NH2) that contains the unbinding cycle and N- and C-terminal linear parts with two histidine residues, one per part; two monocyclic ligands containing one histidine residue, both in the N-terminal position, i.e., MCL2 (Ac-PKKHPc(CFWKTC)PKKS-NH2) and in the C-terminal position, i.e., MCL3 (Ac-PKKSPc(CFWKTC)PKKH-NH2), respectively; and the linear structure LNL (Ac-PKKHPSFWKTSPKKH-NH2). Potentiometric results have shown that the bicyclic structure promotes the involvement of the side chain imidazole donors in Cu(II) binding. On the other hand, the results obtained for the mono-cyclic analogues lead to the conclusion that the coordination of the histidine moiety as an anchoring group is promoted by its location in the peptide sequence further from the nonbinding cycle, strongly influencing the involvement of the amide donors in Cu(II) coordination.

Synthesis and Regioselective Functionalization of Tetrafluorobenzo-[α]-Fused BOPYPY Dyes.

The synthesis of a new bis-BF2 tetrafluorobenzo-[α]-fused BOPYPY dye from 4,5,6,7-tetrafluoroisoindole and 2-hydrazinopyrazine is reported. The regioselectivity of nucleophilic substitution reactions at the periphery of the tetrafluorinated BOPYPY and its α-bromo derivative were investigated using N-, O-, S-, and C-based nucleophiles. Among the aromatic fluorine atoms, the F2 atom is consistently regioselectively substituted, except when the α-position contains a thiophenol group; in this case, F4 is substituted instead due to stabilizing π-π-stacking between the two aromatic groups. The α-bromo BOPYPY derivative also reacts under Stille cross-coupling reaction conditions to produce the corresponding α-substituted product. The spectroscopic properties of these new fluorinated BOPYPYs were investigated and compared with nonfluorinated analogs.

Crystal growth and spectroscopic properties of Nd3+ -doped SrB4O7 single crystal

Single crystal of Nd3+ -doped SrB4O7 (SBO) has been successfully grown by the Czochralski method. The spectroscopic properties were investigated and spectral parameters were calculated based on the Judd–Ofelt theory. The results suggest that the Nd:SBO crystal may have great potential as laser crystal, and through self-frequency doubling, it is expected to achieve the frequency conversion of the characteristic output of Nd3+ in the near infrared to obtain a visible laser.

Meso-Tetrahexyl-7,8-dihydroxychlorin and Its Conversion to ß-Modified Derivatives.

meso-Tetrahexylporphyrin was converted to its corresponding 7,8-dihydroxychlorin using an osmium tetroxide-mediated dihydroxylation strategy. Its diol moiety was shown to be able to undergo a number of subsequent oxidation reactions to form a chlorin dione and porpholactone, the first meso-alkylporphyrin-based porphyrinoid containing a non-pyrrolic building block. Further, the diol chlorin was shown to be susceptible to dehydration, forming the porphyrin enol that is in equilibrium with its keto-chlorin form. The meso-hexylchlorin dione could be reduced and it underwent mono- and bis-methylation reactions using methyl-Grignard reagents, and trifluoromethylation using the Ruppert-Prakash reagent. The optical and spectroscopic properties of the products are discussed and contrasted to their corresponding meso-aryl derivatives (where known). This contribution establishes meso-tetrahexyl-7,8-dihydroxychlorins as a new and versatile class of chlorins that is susceptible to a broad range of conversions to generate functionalized chlorins and a pyrrole-modified chlorin analogue.

Current problems in the field of structure, properties of minerals and methods of their investigation

The main goal of research into the structure and properties of minerals, as well as their crystal chemistry and physics, consists in obtaining fundamental information about the actual atomic and electronic structure of mineral objects and physical regularities of their transformations under the influence of external factors (temperature, pressure, radiation, and environmental chemistry). Such information forms the basis for mineral typification and restoration of mineral crystallization conditions and their evolution in a certain geological situation. This information is widely used in petrogenetic and geochronological constructions. Such studies are also relevant to the development of nature-like technologies for obtaining new promising functional materials. Knowledge of the structure, crystal chemistry, and physics of minerals, typomorphism of their spectroscopic properties, as well as the development of analytical techniques and methods for the synthesis of mineral-like materials are of particular significance. This thematic issue of the Lithosphere journal aims to review of these problems in the context of the materials reported at the XIII All-Russian Scientific Conference “Minerals: Structure, Properties, Research Methods” held in 2023 at the Institute of Geology and Geochemistry of the Ural Branch of the Russian Academy of Sciences in Yekaterinburg.

Optoelectronic Response to the Fluor Ion Bond on 4-(4,4,5,5-Tetramethyl-1,3,2-dioxoborolan-2-yl)benzaldehyde.

Boronate esters are a class of compounds containing a boron atom bonded to two oxygen atoms in an ester group, often being used as precursors in the synthesis of other materials. The characterization of the structure and properties of esters is usually carried out by UV-visible, infrared, and nuclear magnetic resonance (NMR) spectroscopic techniques. With the aim to better understand our experimental data, in this article, the density functional theory (DFT) is used to analyze the UV-visible and infrared spectra, as well as the isotropic shielding and chemical shifts of the hydrogen atoms 1H, carbon 13C and boron 11B in the compound 4-(4,4,5,5-tetramethyl-1,3,2-dioxoborolan-2-yl)benzaldehyde. Furthermore, this study considers the change in its electronic and spectroscopic properties of this particular ester, when its boron atom is coordinated with a fluoride anion. The calculations were carried out using the LSDA and B3LYP functionals in Gaussian-16, and PBE in CASTEP. The results show that the B3LYP functional gives the best approximation to the experimental data. The formation of a coordinated covalent B-F bond highlights the remarkable sensitivity of the NMR chemical shifts of carbon, oxygen, and boron atoms and their surroundings. Furthermore, this bond also highlights the changes in the electron transitions bands n → π* and π → π* during the absorption and emission of a photon in the UV-vis, and in the stretching bands of the C=C bonds, and bending of BO2 in the infrared spectrum. This study not only contributes to the understanding of the properties of boronate esters but also provides important information on the interactions and responses optoelectronic of the compound when is bonded to a fluorine atom.

Structural and Spectroscopic properties of Eu3+ doped SiO2–TiO2 nanoparticles for photonic applications

The Eu3+-doped TiO2 nanoparticles in sol gel silicate glasses of composition (80-x)SiO2 + 20TiO2 + 0.5xEu2O3, (SiTiEu) where x = 0.0 0.5, 1.5, 2.5 and 3.5 mol%, have been prepared by sol-gel technique. The glass samples were investigated by thermos-gravimetric analysis (TGA/DTA), ATR-FTIR, XRD, SEM, TEM, EDX, optical absorption and photoluminescence emission spectroscopy at room temperature (RT). The absorption wavelength of TiO2 doped sol-gel silicate glass were red shifted due to a reduction in band gap energy with increasing annealing temperatures. According to the TEM images, all of the particles were spherical and had an average diameter is around 10 nm. The visible spectra of the Eu3+ doped TiO2 nanoparticles in sol-gel silicate glasses displayed characteristic PL emission 5D0→7FJ (J = 0, 1, 2, 3, 4, 5) transitions of Eu3+ ions at 370 nm excitation. The anatase TiO2:1.5Eu3+ nanocomposite showed high photoluminescence emission at 370 nm excitation, which was attributed to the f-f transitions of Eu3+. The hypersensitive 5D0→7F2 transition was responsible for the major red emission. From the recorded spectra, radiative parameters and Judd-Ofelt (JO) intensity parameters were computed. The Eu3+ co-doped TiO2 nanoparticles in sol-gel silicate glasses displayed emissions mostly in the red regions realized from a CIE chromaticity diagram. The results suggested that materials may be used as an optical material of technological importance such as display devices and also for optical amplifier.

Photo-transformations of 2-aminothiazole-4-carboxylic acid in low-temperature matrices

The structure, spectroscopic properties and photo-induced conformational changes of 2-aminothiazole-4-carboxylic acid (ACA) isolated in argon and nitrogen matrices were studied using matrix-isolation FTIR spectroscopy and DFT calculations undertaken at the B3LYPD3/6–311++G(3df,3pd) level of theory. Out of 18 stable isomers, the three most stable structures with the five-membered ring stabilized by two C = C and C = N double bonds and with different arrangement of the carboxyl group were identified in both matrices after deposition. Conformer ACA1 has trans and conformers ACA2 and ACA3 have cis conformation of the COOH group and the calculated abundance of 69.5 %, 18.2 % and 12.2 %, respectively. Following irradiation at 285 nm, a rotation of the OH group around the C–O bond in ACA1 was detected leading to increase of ACA2. The corresponding reverse photo-rotamerization was detected at 296 nm, resulting in the recovery of the initial isomer ACA1. Upon NIR irradiation a dominant process was rotamerization within the carboxylic group leading to changes in the population of the ACA1 trans and ACA2 cis forms.

Insights into a New Multi‐Stimuli‐Responsive Photochromic Metal‐Organic Framework: Highly Sensitive Turn‐On Luminescence in a Lanthanum Phosphonate

AbstractThe new microporous metal organic framework [La2(H2O)5(H2TPPE)]·3H2O (CAU‐54), is obtained in a hydrothermal reaction of the linker 1,1,2,2‐tetrakis(4′‐phosphonophenyl)ethylene (H8TPPE) and La3+ ions. The extensive characterization including temperature‐dependent crystal structures and spectroscopic properties allowed to understand the unique, multi‐responsive material properties. CAU‐54 exhibits rarely observed reversible photochromism as well as turn‐on photoluminescence by various external chemical or physical stimuli including change of pressure, solvent exchange, and temperature variation. These properties can be unequivocally assigned to the presence of tetraphenylethylene (TPE) moieties of the linker molecules within the MOF, i.e., the ordered spatial arrangement of the linker molecules, the presence of accessible pores as well as the coordination flexibility of the phosphonate groups and the rotational freedom of the linker. By temperature‐dependent steady‐state and time‐resolved luminescence studies, it is shown that this compound exhibits a) blue fluorescence that becomes effectively quenched at room temperature, b) green efficient luminescence with thermal stability up to 400 K, and c) red phosphorescence correlated to the observed photochromism. In addition, CAU‐54 shows unusual thermal expansion properties as shown by temperature‐dependent powder X‐ray diffraction measurements with identified transition points that correlate with the observed temperature‐dependent changes in the photoluminescence.

Electron paramagnetic resonance and luminescence spectroscopy of transition metal ion impurities and X-ray-induced radicals in brushite

Calcium phosphates hold paramount importance as the constituents of hard tissue of living organisms. Among them, brushite (CaHPO4·2H2O), also known as dicalcium phosphate dihydrate (DCPD), is a common precursor in phosphate synthesis and is becoming increasingly appealing as a biomaterial for bone regeneration applications. This study presents a comparative analysis of structural, morphological, thermal, and spectroscopic properties of synthetic brushite prepared by the wet precipitation method with several brushite products available from commercial vendors. Electron paramagnetic resonance (EPR) spectroscopy revealed that Mn2+ and Fe3+ ions are common trace impurities in commercial products. Following exposure to X-rays, EPR signals of several phosphorous-related radicals emerge. The annealing of the irradiated samples gives rise to broad thermally stimulated luminescence (TSL) signals in the 40-120 °C range, which correlates with the annealing kinetics of the radicals. The stability of radiation-induced EPR and TSL signals is limited by the phase transformation temperature from brushite to monetite (CaHPO4). The results of this study provide novel insights into the formation and stability of phosphorous-related radicals and demonstrate how minuscule amounts of impurity ions can strongly influence the spectroscopic properties of brushite.

New insight on the nature of cosmic reionizers from the CEERS survey

The Epoch of Reionization (EoR) began when galaxies grew in abundance and luminosity, so their escaping Lyman continuum (LyC) radiation started ionizing the surrounding neutral intergalactic medium (IGM). Despite significant recent progress, the nature and role of cosmic reionizers are still unclear: in order to define them, it would be necessary to directly measure their LyC escape fraction (fesc). However, this is impossible during the EoR due to the opacity of the IGM. Consequently, many efforts at low and intermediate redshift have been made to determine measurable indirect indicators in high-redshift galaxies so that their fesc can be predicted. This work presents the analysis of the indirect indicators of 62 spectroscopically confirmed star-forming galaxies at 6 ≤ z ≤ 9 from the Cosmic Evolution Early Release Science (CEERS) survey, combined with 12 sources with public data from other JWST-ERS campaigns. From the NIRCam and NIRSpec observations, we measured their physical and spectroscopic properties. We discovered that on average 6 < z < 9 star-forming galaxies are compact in the rest-frame UV (re ∼ 0.4 kpc), are blue sources (UV-β slope ∼ − 2.17), and have a predicted fesc of about 0.13. A comparison of our results to models and predictions as well as an estimation of the ionizing budget suggests that low-mass galaxies with UV magnitudes fainter than M1500 = −18 that we currently do not characterize with JWST observations probably played a key role in the process of reionization.

Crystal structures, Hirshfeld surface analysis, thermogravimetric, and spectroscopic properties of three Zn(Ⅱ) complexes bridged by 4,4′-bipy with organic sulfonate anions as counterions

Three Zn(Ⅱ) sulfonate compounds: {[Zn3(Ac)4(4,4′-bipy)4]·2(3-pySO3)·H2O}n (1), {[Zn(4,4′-bipy)(H2O)4]·2(Me-phSO3)}n (2), and {[Zn(4,4′-bipy)(H2O)4]·2(NH2-phSO3)}n (3), were synthesized through solvent diffusion method at room temperature (3-pySO3H = Pyridine-3-Sulfonic acid; Me-phSO3H = P-Toluene Sulfonic acid; NH2-phSO3H = Sulfanilic acid). Single-crystal X-ray diffractions reveal that the crystal structure of compound 1 contains a 2D cationic layer with pseudo-square grid motifs formed by trinuclear Zn(II) units which connected by 4,4′-bipy ligands. Water molecule forms hydrogen bonds with free 3-PySO3− anions which are located in the voids of the cationic grids. Compounds 2 and 3 show isostructural 1D [Zn(4,4′-bipy)(H2O)4]2+ chains with sulfonate anions connected to the chain via hydrogen bonding. The weak interactions in the structures of the three compounds have been assessed using Hirshfeld surface analyses and 2D fingerprint plots. The Hirshfeld surface shows that the most important contributions for the crystal packing are from H···H and H··O/O··H interactions, which indicate dominant van der Waals interactions. In addition, the compounds were investigated by powder X-ray diffraction (PXRD), elemental analyses, UV–vis, FT-IR, solid-state fluorescence spectroscopy, and thermal analyses (TG-DSC).

Coordination Variations within Binuclear Copper Dioxygen-Derived (Hydro)Peroxo and Superoxo Species; Influences upon Thermodynamic and Electronic Properties.

Copper ion is a versatile and ubiquitous facilitator of redox chemical and biochemical processes. These include the binding of molecular oxygen to copper(I) complexes where it undergoes stepwise reduction-protonation. A detailed understanding of thermodynamic relationships between such reduced/protonated states is key to elucidate the fundamentals of the chemical/biochemical processes involved. The dicopper(I) complex [CuI2(BPMPO-)]1+ {BPMPOH = 2,6-bis{[(bis(2-pyridylmethyl)amino]methyl}-4-methylphenol)} undergoes cryogenic dioxygen addition; further manipulations in 2-methyltetrahydrofuran generate dicopper(II) peroxo [CuII2(BPMPO-)(O22-)]1+, hydroperoxo [CuII2(BPMPO-)(-OOH)]2+, and superoxo [CuII2(BPMPO-)(O2•-)]2+ species, characterized by UV-vis, resonance Raman and electron paramagnetic resonance (EPR) spectroscopies, and cold spray ionization mass spectrometry. An unexpected EPR spectrum for [CuII2(BPMPO-)(O2•-)]2+ is explained by the analysis of its exchange-coupled three-spin frustrated system and DFT calculations. A redox equilibrium, [CuII2(BPMPO-)(O22-)]1+ ⇄ [CuII2(BPMPO-)(O2•-)]2+, is established utilizing Me8Fc+/Cr(η6-C6H6)2, allowing for [CuII2(BPMPO-)(O2•-)]2+/[CuII2(BPMPO-)(O22-)]1+ reduction potential calculation, E°' = -0.44 ± 0.01 V vs Fc+/0, also confirmed by cryoelectrochemical measurements (E°' = -0.40 ± 0.01 V). 2,6-Lutidinium triflate addition to [CuII2(BPMPO-)(O22-)]1+ produces [CuII2(BPMPO-)(-OOH)]2+; using a phosphazene base, an acid-base equilibrium was achieved, pKa = 22.3 ± 0.7 for [CuII2(BPMPO-)(-OOH)]2+. The BDFEOO-H = 80.3 ± 1.2 kcal/mol, as calculated for [CuII2(BPMPO-)(-OOH)]2+; this is further substantiated by H atom abstraction from O-H substrates by [CuII2(BPMPO-)(O2•-)]2+ forming [CuII2(BPMPO-)(-OOH)]2+. In comparison to known analogues, the thermodynamic and spectroscopic properties of [CuII2(BPMPO-)] O2-derived adducts can be accounted for based on chelate ring size variations built into the BPMPO- framework and the resulting enhanced CuII-ion Lewis acidity.

The Characterization of Multifaceted PREP1 Peptides Provides Insights into Correlations between Spectroscopic and Structural Properties of Amyloid-like Assemblies.

The widespread ability of proteins and peptides to self-assemble by forming cross-β structure is one of the most significant discoveries in structural biology. Intriguingly, the cross-β association of proteins/peptides may generate intricate supramolecular architectures with uncommon spectroscopic properties. We have recently characterized self-assembled peptides extracted from the PREP1 protein that are endowed with interesting structural/spectroscopic properties. We here demonstrate that the green fluorescence emission of the peptide PREP1[117-132] (λem ~ 520 nm), can be induced by excitation with UV radiation. The associated unusually large Stokes shift (Δλ ~ 150 nm) represents, to the best of our knowledge, the first evidence of an internal resonance energy transfer in amyloid-like structures, where the blue emission of some assemblies becomes the excitation radiation for others. Moreover, the characterization of PREP1[117-132] variants provides insights into the sequence/structure and structure/spectroscopic properties relationships. Our data suggests that the green fluorescence is plausibly associated with antiparallel β-sheet states of the peptide whereas parallel β-sheet assemblies are only endowed with blue fluorescence. Notably, the different PREP1[117-132] variants also form assemblies characterized by distinct morphologies. Indeed, the parent peptide and single mutants form compact but structured aggregates whereas most of the double mutants exhibit elongated and highly extended fibers.

Molecular electrostatic potential (MEP), thermodynamic properties and spectral analysis of methyl orange doped L–lysine sulfate (MLLS) semi organic crystals

AbstractSemi organic compounds enable several structural and bonding methods for the molecular engineering of novel materials. The optical analysis, methyl orange doped L‐lysine sulfate (MLLS) is an innovative NLO material enabling the rate of frequency up change for stronger systems with lasers in the UV range with clear absorption. With this experimental studies the theoretical studies of the L‐lysine sulfate and its molecules were studied using Gaussian09w software. X‐ray analysis, UV, FTIR, NMR, Mulliken Charges, HOMO‐LUMO, MEP and some related thermodynamic properties were studied. The chosen nucleophilic site is symbolized by the color red, the more popular electrophilic site has been highlighted during MEP mapping. Spectroscopical and thermodynamical properties related to functional behavior of molecules were also discussed with obtained results.