Spectroscopic Optical Coherence Tomography Research Articles

Chromatic dispersion measurement of optical fiber using spectroscopic optical coherence tomography

Chromatic dispersion (CD) in optical fibers results in the broadening and overlapping of transmitted lights, and thus reduces the capacity of information transmission and increases the bit-error-rate of communication system. Hence it needs to be accurately measured and then compensated. There have been various methods for fiber CD measurement, but most of them are complicated to obtain wavelength components and require adjustment during measurement, and thus have the drawbacks of being time-consuming, and susceptible to system stability and environmental influences. In this work, a measurement method of fiber CD based on the principle of spectroscopic optical coherence tomography (OCT) was proposed by using a swept-source OCT system to capture interference signal, and using Wigner-Villy distribution as time-frequency analysis method to extract spectral − spatial distribution. Wavelength − OPD curve could be obtained from the distribution, where the OPD (optical path difference) is the spatial delay induced by the fiber CD, and the CD profile varying with the wavelength was finally obtained from the curve. One fiber sample was measured with 1060 and 1310 nm band systems, and another different type of fiber sample was measured with 1310 nm band system. The measured results are agreement with the claimed or theoretical results, demonstrating the feasibility of this method. It has some significant advantages and is a promising method for fiber CD measurements.

Deep learning classification of ex vivo human colon tissues using spectroscopic optical coherence tomography.

Screening for colorectal cancer (CRC) with colonoscopy has improved patient outcomes; however, it remains the third leading cause of cancer-related mortality, novel strategies to improve screening are needed. Here, we propose an optical biopsy technique based on spectroscopic optical coherence tomography (OCT). Depth resolved OCT images are analyzed as a function of wavelength to measure optical tissue properties and used as input to machine learning algorithms. Previously, we used this approach to analyze mouse colon polyps. Here, we extend the approach to examine human biopsied colonic epithelial tissue samples ex vivo. Optical properties are used as input to a novel deep learning architecture, producing accuracy of up to 97.9% in discriminating tissue type. SOCT parameters are used to create false colored en face OCT images and deep learning classifications are used to enable visual classification by tissue type. This study advances SOCT toward clinical utility for analysis of colonic epithelium.

Dispersion mismatch correction for evident chromatic anomaly in low coherence interferometry.

The applications of ultrafast optics to biomedical microscopy have expanded rapidly in recent years, including interferometric techniques like optical coherence tomography and microscopy (OCT/OCM). The advances of ultra-high resolution OCT and the inclusion of OCT/OCM in multimodal systems combined with multiphoton microscopy have marked a transition from using pseudo-continuous broadband sources, such as superluminescent diodes, to ultrafast supercontinuum optical sources. We report anomalies in the dispersion profiles of low-coherence ultrafast pulses through long and non-identical arms of a Michelson interferometer that are well beyond group delay or third-order dispersions. This chromatic anomaly worsens the observed axial resolution and causes fringe artifacts in the reconstructed tomograms in OCT/OCM using traditional algorithms. We present DISpersion COmpensation Techniques for Evident Chromatic Anomalies (DISCOTECA) as a universal solution to address the problem of chromatic dispersion mismatch in interferometry, especially with ultrafast sources. First, we demonstrate the origin of these artifacts through the self-phase modulation of ultrafast pulses due to focusing elements in the beam path. Next, we present three solution paradigms for DISCOTECA: optical, optoelectronic, and computational, along with quantitative comparisons to traditional methods to highlight the improvements to the dynamic range and axial profile. We explain the piecewise reconstruction of the phase mismatch between the arms of the spectral-domain interferometer using a modified short-term Fourier transform algorithm inspired by spectroscopic OCT. Finally, we present a decision-making guide for evaluating the utility of DISCOTECA in interferometry and for the artifact-free reconstruction of OCT images using an ultrafast supercontinuum source for biomedical applications.

Spectroscopic optical coherence tomography at 1200nm for lipid detection.

Spectroscopic analysis of optical coherence tomography (OCT) data can yield added information about the sample's chemical composition, along with high-resolution images. Typical commercial OCT systems operate at wavelengths that may not be optimal for identifying lipid-containing samples based on absorption features. The main aim of this study was to develop a 1200nm spectroscopic OCT (SOCT) for the classification of lipid-based and water-based samples by extracting the lipid absorption peak at 1210nm from the OCT data. We developed a 1200nm OCT system and implemented a signal processing algorithm that simultaneously retrieves spectroscopic and structural information from the sample. In this study, we validated the performance of our OCT system by imaging weakly scattering phantoms with and without lipid absorption features. An orthogonal projections to latent structures-discriminant analysis (OPLS-DA) model was developed and applied to classify weakly scattering samples based on their absorption features. The OCT system achieved an axial resolution of and a sensitivity of 95dB. The calibrated OPLS-DA model on weakly scattering samples with lipid and water-based absorption features correctly classified 19/20 validation samples. The 1200nm SOCT system can discriminate the lipid-containing weakly scattering samples from water-based weakly scattering samples with good predictive ability.

Latent fingerprint imaging by spectroscopic optical coherence tomography

Optical coherence tomography (OCT) is a non-contact and non-invasive optical method for evaluating semitransparent and scattering objects. Its unique features, such as non-destructive 3D measurements of tested objects with a fast scanning rate, make this technique interesting for latent fingerprint reading, which is the subject of this paper. So far, OCT has not found widespread use for reading fingerprints directly from surfaces due to its insufficient axial resolution. This problem has been overcome by applying spectroscopic analysis to the OCT measurements, which is based on retrieving the spatially resolved spectral characteristics of the recorded backscattered light directly from the OCT measurement data. The spectroscopic analysis is very sensitive to thin film thickness variations, improving the readability of the latent fingerprints by OCT, which is reported here as well. This study includes a description of spectroscopic analysis in combination with OCT and indicates the benefits for thin film evaluation, in particular, latent fingerprints. The example of latent fingerprint OCT measurements enhanced by spectroscopic analysis has been shown, as well as a brief discussion of the method's applicability. Finally, improving fingerprint OCT imaging contrast and readability by applying spectroscopic analysis have been confirmed.

Monte Carlo-based full-wavelength simulator of Fourier-domain optical coherence tomography.

Monte Carlo (MC) simulation has been widely used to study imaging procedures, including Fourier-domain optical coherence tomography (FD-OCT). Despite the broadband nature of FD-OCT, the results obtained at a single wavelength are often used in previous studies. Some wavelength-relied imaging applications, such as spectroscopic OCT (S-OCT), are unlikely to be simulated in this way due to the lack of information from the entire spectrum. Here, we propose a novel simulator for full-wavelength MC simulation of FD-OCT. All wavelengths within the emission spectrum of the light source will be simulated, and the optical properties derived from Mie theory will be applied. We further combine the inverse discrete Fourier transform (IDFT) with a probability distribution-based signal pre-processing to combat the excessive noises in the OCT signal reconstruction, which is caused by the non-uniform distribution of the scattering events at different wavelengths. Proof-of-concept simulations are conducted to show the excellent performance of the proposed simulator on signal reconstruction and optical properties extraction. Compared with the conventional method, the proposed simulator is more accurate and could better preserve the wavelength-dependent features. For example, the mean square error (MSE) computed between the backscattering coefficient extracted by the proposed simulator and the ground truth is 0.11, which is far less than the value (7.67) of the conventional method. We believe this simulator could be an effective tool to study the wavelength dependency in FD-OCT imaging as well as a preferred solution for simulating spectroscopic OCT.

Degeneration of Melanin-Containing Structures Observed Longitudinally in the Eyes of SOD1-/- Mice Using Intensity, Polarization, and Spectroscopic OCT.

PurposeMelanin plays an important function in maintaining eye health, however there are few metrics that can be used to study retinal melanin content in vivo.MethodsThe slope of the spectral coefficient of variation (SSCoV) is a novel biomarker that measures chromophore concentration by analyzing the local divergence of spectral intensities using optical coherence tomography (OCT). This metric was validated in a phantom and applied in a longitudinal study of superoxide dismutase 1 knockout (SOD1−/−) mice, a model for wet and dry age-related macular degeneration. We also examined a new feature of interest in standard OCT image data, the ratio of maximum intensity in the retinal pigment epithelium to that of the choroid (RC ratio). These new biomarkers were supported by polarization-sensitive OCT and histological analysis.ResultsSSCoV correlated well with depolarization metrics both in phantom and in vivo with both metrics decreasing more rapidly in SOD1−/− mice with age (P < 0.05). This finding is correlated with reduced melanin pigmentation in the choroid over time. The RC ratio clearly differentiated the SOD1−/− and control groups (P < 0.0005) irrespective of time and may indicate lower retinal pigment epithelium melanin in the SOD1−/− mice. Histological analysis showed decreased melanin content and potential differences in melanin granule shape in SOD1−/− mice.ConclusionsSSCoV and RC ratio biomarkers provided insights into the changes of retinal melanin in the SOD1−/− model longitudinally and noninvasively.Translational RelevanceThese biomarkers were designed with the potential for rapid adoption by existing clinical OCT systems without requiring new hardware.

Microcrystalline diamond film evaluation by spectroscopic optical coherence tomography

This study has focused on the microcrystalline diamond film (MCD) thickness evaluation. For this purpose, optical coherence tomography (OCT) enhanced by spectroscopic analysis has been used as a method of choice. The average thickness of the tested layer was about 1.5 µm, which is below the standard 2-point OCT resolution. In this case, the usefulness of the spectroscopic analysis was confirmed for the evaluation of the thickness changes in the submicrometer range. Full Text: PDF ReferencesM.D. Drory, J.W. Hutchinson, "Diamond Coating of Titanium Alloys", Science, 263 (1994). CrossRef J. Wang, J. Zhou, H.Y. Long, Y.N. Xie, X.W. Zhang, H. Luo, Z.J. Deng, Q. Wei, Z.M. Yu, J. Zhang, Z.G. Tang, "Tribological, anti-corrosive properties and biocompatibility of the micro- and nano-crystalline diamond coated Ti6Al4V", Surf. Coat. Technol., 258 (2014). CrossRef P.A. Nistor, P.W. May, F. Tamagnini, A.D. Randall, M.A. Caldwell, "Long-term culture of pluripotent stem-cell-derived human neurons on diamond – A substrate for neurodegeneration research and therapy", Biomaterials, 61 (2015). CrossRef C.A. Love, R.B. Cook, T.J. Harvey, P.A. Dearnley, R.J.K. Wood, "Diamond like carbon coatings for potential application in biological implants—a review", Tribol. Int., 63 (2013). CrossRef P. Strąkowska, R. Beutner, M. Gnyba, A. Zielinski, D. Scharnweber, "Electrochemically assisted deposition of hydroxyapatite on Ti6Al4V substrates covered by CVD diamond films — Coating characterization and first cell biological results", Materials Science and Engineering: C, 59 (2016). CrossRef T.S. Ho, P. Yeh, C.C. Tsai, K.Y. Hsu, S.L. Huang., "Spectroscopic measurement of absorptive thin films by Spectral-Domain Optical Coherence Tomography", Opt. Express 22, 5 (2014). CrossRef N. Bosschaart, T.G. van Leeuwen, M.C.G. Aalders, D.J. Faber, "Quantitative comparison of analysis methods for spectroscopic optical coherence tomography", Biomedical Opt. Express 4, 11 (2013). CrossRef F.E Robles, C. Wilson, G. Grant, A. Wax, "Molecular imaging true-colour spectroscopic optical coherence tomography", Nat. Photonics 5, 12 (2011). CrossRef A.F. Fercher, W. Drexler, C.K. Hitzenberger, T. Lasser, "Optical coherence tomography - principles and applications", Rep. Prog. Phys. 66, 239 (2003). CrossRef A.M. Kamińska, M.R. Strąkowski, J. Pluciński, "Spectroscopic Optical Coherence Tomography for Thin Layer and Foil Measurements", Sensors 20, 19, (2020). CrossRef M. Kraszewski, M. Strąkowski, J. Pluciński, B.B. Kosmowski, "Spectral measurement of birefringence using particle swarm optimization analysis", Appl. Opt. 54, 1 (2015). CrossRef

Spectroscopic optical coherence tomography for classification of colorectal cancer in a mouse model.

Noninvasive diagnosis of the malignant potential of colon polyps can improve prevention of colorectal cancer without the need for time-consuming and expensive biopsies. This study examines the use of spectroscopic optical coherence tomography (OCT) to classify tissue from genetically engineered mouse models of early-stage adenoma (APC) and advanced adenocarcinoma (AKP) in which tumors are induced in the distal colon. The optical tissue properties of scattering power and scattering attenuation coefficient are evaluated by analyzing the imaging data collected from tissues. Classifications are generated using 2D linear discriminant analysis with high levels of discrimination obtained. The overall classification accuracy obtained was 91.5%, with 100% sensitivity and 96.7% specificity in separating tumors from benign tissue, and 77.8% sensitivity and 99.4% specificity in separating adenocarcinoma from nonmalignant tissue. Thus, this study demonstrates the clinical potential of using spectroscopic OCT for rapid detection of colon adenoma and colorectal cancer.

Latent Fingerprint Imaging by Spectroscopic Optical Coherence Tomography

Latent Fingerprint Imaging by Spectroscopic Optical Coherence Tomography

Inverse spectroscopic optical coherence tomography (IS-OCT) for characterization of particle size and concentration

Inverse spectroscopic optical coherence tomography (IS-OCT) methods apply inverse problem formulations to acquired spectra to estimate depth-resolved sample properties. In the current study, we modelled the time-frequency-distributions using Lambert-Beer’s law and implemented IS-OCT using backscattering spectra calculated from Mie theory, then demonstrated the algorithm on polystyrene microspheres under idealized conditions. The results are significant because the method generates depth dependent estimates of both the concentration and diameter of scattering particles.

The mechanism of intraocular pressure rise after keratoplasty

Purpose: To determine the pathomechanism of increased intraocular pressure after penetrating and lamellar keratoplasty based on clinical observation and literature data.&#x0D; Materials and methods: Morphometric analysis of the anterior segment of the eye using spectroscopic optical coherence tomography, gonioscopy and biomicroscopy.&#x0D; Results: Pre- and postoperative spectroscopic optical coherence tomography scans in patients after keratoplasty reveal deformation of the peripheral cornea, narrowing of the iridocorneal angle, presence of anterior synechiae and various types of pupillary block.&#x0D; Conclusions: The mechanism of elevated intraocular pressure after corneal grafting is complex and depends on pre-, intra- and postoperative factors, such as anatomy changes of the iridocorneal angle, presence of anterior synechiae, as well as anterior and posterior pupillary block. Spectroscopic optical coherence tomography plays an important role in diagnosis and further treatment management.

Origins of subdiffractional contrast in optical coherence tomography.

We demonstrate that OCT images quantify subdiffractional tissue structure. Optical coherence tomography (OCT) measures stratified tissue morphology with spatial resolution limited by the temporal coherence length. Spectroscopic OCT processing, on the other hand, has enabled nanoscale sensitive analysis, presenting an unexplored question: how does subdiffractional information get folded into the OCT image and how does one best analyze to allow for unambiguous quantification of ultrastructure? We first develop an FDTD simulation to model spectral domain OCT with nanometer resolution. Using this, we validate an analytical relationship between the sample statistics through the power spectral density (PSD) of refractive index fluctuations and three measurable quantities (image mean, image variance, and spectral slope), and have found that each probes different aspects of the PSD (amplitude, integral and slope, respectively). Finally, we found that only the spectral slope, quantifying mass scaling, is monotonic with the sample autocorrelation shape.

Optical density based quantification of total haemoglobin concentrations with spectroscopic optical coherence tomography

Spectroscopic optical coherence tomography (sOCT) has emerged as a new possibility for non-invasive quantification of total haemoglobin concentrations [tHb]. Recently, we demonstrated that [tHb] measured in ex-vivo human whole-blood with a conventional sOCT system achieves a precision of 9.10 g/dL with a bias of 1.50 g/dL. This precision improved by acquiring data with a combination of focus tracking and zero-delay acquisition (FZA) that compensated for experimental limitations, increasing to 3.80 g/dL with a bias of 1.50 g/dL. Nevertheless, sOCT precision should improve at least to sim 2 g/dL to be clinically relevant. Therefore, sOCT-based [tHb] determinations require the development of new analysis methods that reduce the variability of [tHb] estimations. In this work, we aim to increase sOCT precision by retrieving the [tHb] content from a numerical optimisation of the optical density (OD), while considering the blood absorption flattening effect. The OD-based approach simplifies previous two-step Lambert–Beer fitting approaches to a single step, thereby reducing errors during the fitting procedure. We validated our model with ex-vivo [tHb] measurements on flowing whole-blood samples in the clinical range (7–23 g/dL). Our results show that, with the new model, conventional sOCT can determine [tHb] with a precision of 3.09 g/dL and a bias of 0.86 g/dL compared to a commercial blood analyser. We present further precision improvement by combining the OD methodology with FZA, leading to a precision of 2.08 g/dL with a bias of 0.46 g/dL.

In vivo quantitative analysis of anterior chamber white blood cell mixture composition using spectroscopic optical coherence tomography.

Anterior uveitis is the most common form of intraocular inflammation, and one of its main signs is the presence of white blood cells (WBCs) in the anterior chamber (AC). Clinically, the true composition of cells can currently only be obtained using AC paracentesis, an invasive procedure to obtain AC fluid requiring needle insertion into the AC. We previously developed a spectroscopic optical coherence tomography (SOCT) analysis method to differentiate between populations of RBCs and subtypes of WBCs, including granulocytes, lymphocytes and monocytes, both in vitro and in ACs of excised porcine eyes. We have shown that different types of WBCs have distinct characteristic size distributions, extracted from the backscattered reflectance spectrum of individual cells using Mie theory. Here, we further develop our method to estimate the composition of blood cell mixtures, both in vitro and in vivo. To do so, we estimate the size distribution of unknown cell mixtures by fitting the distribution observed using SOCT with a weighted combination of reference size distributions of each WBC type calculated using kernel density estimation. We validate the accuracy of our estimation in an in vitro study, by comparing our results for a given WBC sample mixture with the cellular concentrations measured by a hemocytometer and SOCT images before mixing. We also conducted a small in vivo quantitative cell mixture validation pilot study which demonstrates congruence between our method and AC paracentesis in two patients with uveitis. The SOCT based method appears promising to provide quantitative diagnostic information of cellular responses in the ACs of patients with uveitis.

Design and optimization of line-field optical coherence tomography at visible wavebands.

Parallel line-field Fourier-domain optical coherence tomography (LF-FDOCT) has emerged to enable relatively higher speeds than the conventional FDOCT system. In the LF-FDOCT, one B-scan is captured at a time instead of scanning the beam to acquire hundreds of A-scans. On the other hand, spectroscopic OCT using the visible waveband provides absorption information over multiple wavelengths at each voxel. This information of spectral absorption enables quantitative measurement of blood oxygenation, voxel by voxel. Here, we presented the design and optimization of a LF-FDOCT system at the visible waveband (520-620 nm), especially using a generic Camera Link area sensor (2048 × 1088 pixels). To optimize the axial resolution and depth of imaging volume, we simulated various parameters and found that two Nyquist optima can exist, the origin and implication of which has been discussed. As a result, our system acquired 1088 A-scans in parallel at the camera's frame rate of 281 frame per second, achieving an equivalent rate of over 300,000 A-scan/s, while minimizing sacrifice in the point spread function (2.8 × 3.1 × 3.2 µm3, x × y × z) and the field of view (750 × 750 × 750 µm3). As an example of application, we presented high-speed imaging of blood oxygenation in the rodent brain cortex.

Spectroscopic Optical Coherence Tomography for Thin Layer and Foil Measurements.

The main goal of this research was to assess if it is possible to evaluate the thickness of thin layers (both thin films on the surface and thin layers below the surface of the tested object) and foils using optical coherence tomography (OCT) for thickness assessment under the resolution of the standard commercially available OCT measurement system. In the proposed solution, light backscattered from the evaluated thin layer has been expressed as a multiple beam interference. Therefore, the OCT system was modeled as a two-beam interferometer (e.g., Michelson), in which one beam propagates from the reference arm and the other comes from a Fabry–Pérot interferometer. As a consequence, the mathematical model consists of the main Michelson interferometer, in which the measuring arm represents the Fabry–Pérot interferometer. The parameters of the layer (or foil) are evaluated by analyzing the minimum value of the interference contrast. The model developed predicts the behavior of the thin layers made from different materials (with different refractive indexes) with different thickness and located at different depths. To verify the correctness of the proposed model, an experiment with a wedge cell has been carried out. The wedge cell was shifted across the scanning beam using a linear translation stage with a micrometer screw under the scanning head. The relationship between the thickness of the gap of the wedge cell and the OCT output signal is presented. For the additional verification of the proposed model, the results of the measurements of the thickness of the thin foil were compared with the theoretical results of the simulations. The film thickness was evaluated based on the calculated positions of the minimum value of interference contrast. A combination of the standard potentialities of OCT with the proposed approach to analyzing the signal produces new metrological possibilities. The method developed allows us to evaluate thickness under the resolution of the system and the location of the layer as well. This produces the possibility of measuring a layer which is covered by another layer. Moreover, it is possible to create a thickness map with high sensitivity to thickness changes. These experiments and simulations are the culmination of preliminary research for evaluating the potential of the proposed measurement method.

Direct inverse linearization of piezoelectric actuator’s initial loading curve and its applications in full-field optical coherence tomography (FF-OCT)

Piezoelectric actuator (PEA) has become popular in spectroscopic optical coherence tomography (SOCT) as it can provide depth dependent spectra with sub‐nanometer positioning resolution. However, the inherent hysteresis of the PEA introduces unwanted distortions to the obtained spectra and image. OCT imaging can be completed during the first forward motion of the PEA, i.e., the initial loading curve (ILC). Therefore, this paper proposes a feedforward hysteresis compensation method for the linearization of the ILC, aiming at improving the spectroscopic and imaging accuracy of OCT without any feedback on the PEA’s displacement or feedback controllers. A polynomial operator is adopted as the hysteresis compensator and the coefficients are directly identified from the measured ILC, following the direct inverse modeling approach. Experimental results on a standalone PEA verifies that the proposed method is superior to the popular Prandtl-Ishlinskii model in the linearization of the ILC. This proposed method is further implemented on a full‐field OCT system to linearize the motion of the PEA‐driven scanner. Experimental results show that the ILC of the scanner can be efficiently linearized. In vivo skin imaging is then performed to evaluate the performance of the proposed method. Ultra-high precision linearization enables remarkable positioning accuracy in the skin constituents and skin layers observed in the in vivo forearm cross-sectional skin image. Depth-dependent spectral analysis could quantify molecular/chemical composition of the tissue constituents accurately.

Ophthalmologic Diseases in Kidney Transplant Recipients: A Single-Center Prospective Study

BackgroundKidney transplant (KTx) recipients usually experience many comorbidities (eg, hypertension, diabetes, cardiovascular disease, glaucoma). They usually are older and have some ophthalmologic disorders, which may deteriorate after Ktx and some others may develop. ObjectiveWe aimed to review a 1-year examination of the eyesight characteristics in patients after KTx. MethodsThe study encompassed 82 eyes in 41 patients who underwent KTx in the years 2014 to 2018. All patients had visual acuity measurement, tonometry, slit lamp examination, and spectroscopic optical coherence tomography. ResultsThe most frequently observed changes during the 1-year observation were cataract (46%), hypertensive angiopathy (20%), and glaucoma (20%). One year after the renal transplant visual acuity declined in 22 patients (54%). In 45% of those with eyesight deterioration the cause was cataract, while in patients with no changes in eyesight (n = 9) cataract was not diagnosed. Patients with cataracts had been more often treated with high doses of steroids (steroid boluses), mainly because of acute rejection, which was significantly associated with cataract developing after Ktx (42% vs 11%; P = .019). On univariate analysis Charlson Comorbidity Index, total ischemic time, and steroid boluses were significantly associated with cataract developing after Ktx; none of these factors were an independent predictor on multivariate analysis. ConclusionsThe most common ophthalmologic diagnoses in patients after Ktx include cataract, glaucoma, and hypertensive angiopathy. Visual acuity deterioration, seen so often in the studied group of the patients, was mainly the effect of cataract progress. The effect of steroid boluses on cataract progress was meaningful.

Spectral and time domain optical coherence spectroscopy

We propose a novel method for spectroscopic optical coherence tomography (OCT). This method uses the dependence of the Doppler frequency spectrum on the wavenumber. Controlled modulation of the light in the spectral OCT interferometer allows for an instantaneous depth-resolved reconstruction of the backscattered light spectrum from all depths. The feasibility of the spectroscopic analysis using the proposed scheme was confirmed experimentally.