Species-specific Characteristics Research Articles

Genome-Wide Identification and Expression Analysis of the MADS-Box Gene Family in Cassava (Manihot esculenta)

The MADS-box gene family constitutes a vital group of transcription factors that play significant roles in regulating plant growth, development, and signal transduction processes. However, research on the MADS-box genes in cassava (Manihot esculenta) has been relatively limited. To gain deeper insights into the functions of the MADS-box genes in cassava development, in this study, we undertook a comprehensive genome-wide identification of the MADS-box gene family in cassava. We identified a total of 86 MADS-box genes with complete domains in the cassava genome, designated as MeMADS01 to MeMADS86. Through bioinformatic analyses, we investigated the basic physicochemical properties, conserved motifs, chromosomal locations, and phylogenetic relationships of the cassava MADS-box genes. The MADS-box gene family of cassava exhibited conservation, as well as species-specific characteristics, with intron loss being a predominant mode of evolution for the MADS-box genes. Expression pattern variations in the MeMADS genes across different tissues offer insights into their potential functions. Time-ordered gene co-expression network (TO-GCN), transcriptome data, and RT-qPCR analysis suggested the responsiveness of the MADS-box genes to drought stress. Meanwhile, MeMADS12 might be involved in regulating flowering under drought conditions via an ABA (abscisic acid)-dependent pathway. These findings provide valuable resources for a deeper understanding of the biological roles of the MADS-box genes in cassava.

Trends in shigellosis notifications in England, January 2016 to March 2023.

We reviewed all diagnoses of Shigella species notified to the UK Health Security Agency from January 2016 to March 2023. An overall increase in notifications of shigellosis was seen between 2016 (n = 415/quarter) and 2023 (n = 1029/quarter). However, notifications dramatically declined between March 2020 and September 2021 during the COVID-19 pandemic (n = 208/quarter) highlighting the impact of travel and social distancing restrictions on transmission. S. sonnei diagnoses were more affected by lockdown restrictions than S. flexneri, most likely due to a combination of species-specific characteristics and host attributes. Azithromycin resistance continued to be associated with epidemics of sexually transmissible S. flexneri (adult males = 45.6% vs. adult females = 8.7%) and S. sonnei (adult males = 59.5% vs. adult females = 14.6%). We detected resistance to ciprofloxacin in S. sonnei from adult male cases not reporting travel at a higher frequency (79.4%) than in travel-associated cases (61.7%). Extensively drug-resistant Shigella species associated with sexual transmission among men almost exclusively had ESBL encoded by blaCTX-M-27, whereas those associated with returning travellers had blaCTX-M-15. Given the increasing incidence of infections and AMR, we recommend that enhanced surveillance is used to better understand the impact of travel and sexual transmission on the acquisition and spread of MDR and XDR Shigella species.

In vitro comparison of human and murine trabecular meshwork cells: implications for glaucoma research

The trabecular meshwork (TM) is crucial for regulating intraocular pressure (IOP), and its dysfunction significantly contributes to glaucoma, a leading cause of vision loss and blindness worldwide. Although rodents are commonly used as animal models in glaucoma research, the applicability of these findings to humans is limited due to the insufficient understanding of murine TM. This study aimed to compare primary human TM (hTM) and murine TM (mTM) cells in vitro to enhance the robustness and translatability of murine glaucoma models. In this in vitro study, we compared primary hTM and mTM cells under simulated physiological and pathological conditions by exposing both cell types to the glucocorticoid dexamethasone (DEX) and Transforming Growth Factor β (TGFB2), both of which are critical in the pathogenesis of several ophthalmological diseases, including glaucoma. Phagocytic properties were assessed using microbeads. Cells were analyzed through immunocytochemistry (ICC) and Western blot (WB) to evaluate the expression of extracellular matrix (ECM) components, such as Fibronectin 1 (FN1) and Collagen IV (COL IV). Filamentous-Actin (F-Act) staining was used to analyze cross-linked actin network (CLAN) formation. Additionally, we evaluated cytoskeletal components, including Vimentin (VIM), Myocilin (MYOC), and Actin-alpha-2 (ACTA2). Our results demonstrated significant similarities between human and murine TM cells in basic morphology, phagocytic properties, and ECM and cytoskeletal component expression under both homeostatic and pathological conditions in vitro. Both human and murine TM cells exhibited epithelial-to-mesenchymal transition (EMT) after exposure to DEX or TGFB2, with comparable CLAN formation observed in both species. However, there were significant differences in FN1 and MYOC induction between human and murine TM cells. Additionally, MYOC expression in hTM cells depended on fibronectin coating. Our study suggests that murine glaucoma models are potentially translatable to human TM. The observed similarities in ECM and cytoskeletal component expression and the comparable EMT response and CLAN formation support the utility of murine models in glaucoma research. The differences in FN1 and MYOC expression between hTM and mTM warrant further investigation due to their potential impact on TM properties. Overall, this study provides valuable insights into the species-specific characteristics of TM and highlights opportunities to refine murine models for better relevance to human glaucoma.

MiR827 orchestrates the regulation of SPX-MFS1 and SPX-MFS5 with the assistance of lncRNA767 to enhance phosphate starvation tolerance and maize development.

MicroRNA827 (miR827) is functionally conserved among different plant species and displays species-specific characteristics, but the mechanisms by which miR827 regulates phosphate (Pi) starvation tolerance and maize development remain elusive. We found that miR827 selectively targets the Pi transporter genes SPX-MFS1 and SPX-MFS5. miR827 overexpression improved the Pi starvation tolerance, plant architecture and grain yield and quality, whereas miR827 suppression yielded a contrasting phenotype. In addition, we identified a specific long noncoding RNA (lncRNA767) that serves as a direct target and a facilitator of miR827 and can stabilize the SPX-MFS1 and SPX-MFS5 transcripts, leading to their translation inhibition. The orchestrated regulation of SPX-MFS1 and SPX-MFS5 modulates PHR1; 1 and PHR1; 2, which are critical transcription factors in Pi signalling, and thereby affects the expression of downstream Pi starvation-induced genes. Together, these findings demonstrate that miR827, assisted by lncRNA767, enhances SPX-MFS1 and SPX-MFS5 suppression and thus exerts a significant impact on Pi homeostasis and several essential agronomic traits of maize.

Local neighborhood affects stem rehydration under drought: evidence from mixtures of European beech with two different conifers.

Mixed-species forests are, for multiple reasons, promising options for forest management in Central Europe. However, the extent to which interspecific competition affects tree hydrological processes is not clear. High-resolution dendrometers capture sub-daily variations in stem diameter; they can simultaneously monitor stem growth (irreversible changes in diameter) and water status (reversible changes) of individual trees. Using the information on water status, we aimed to assess potential effects of tree species mixture, expressed as local neighborhood identity, on night-time rehydration and water stress. We deployed 112 sensors in pure and mixed forest stands of European beech, Norway spruce, and Douglas fir on four sites in north-western Germany, measuring stem diameter in 10-minute intervals for a period of four years (2019-2022). In a mixture distribution model, we used environmental variables, namely soil matric potential, atmospheric vapor pressure deficit, temperature, precipitation, and neighborhood identity to explain night-time rehydration, measured as the daily minimum tree water deficit (TWDmin). TWDmin was used as a daily indicator of water stress and the daily occurrence of sufficient water supply, allowing for stem growth (potential growth). We found that species and neighborhood identity affected night-time rehydration, but the impacts varied depending on soil water availability. While there was no effect at high water availability, increasing drought revealed species-specific patterns. Beech improved night-time rehydration in mixture with Douglas fir, but not in mixture with spruce. Douglas fir however, only improved rehydration at a smaller share of beech in the neighborhood, while beech dominance tended to reverse this effect. Spruce was adversely affected when mixed with beech. At species level and under dry conditions, we found that night-time rehydration was reduced in all species, but beech had a greater capacity to rehydrate under high to moderate soil water availability than the conifers, even under high atmospheric water demand. Our study gives new insights into neighborhood effects on tree water status and highlights the importance of species-specific characteristics for tree-water relations in mixed-species forests. It shows that drought stress of European beech can be reduced by admixing Douglas fir, which may point towards a strategy to adapt beech stands to climate change.

Pile driving noise impacts behavioral patterns of important East Asian juvenile marine fishes

The surge in renewable energy demand, particularly from offshore wind farm (OWF), raises concerns about underwater noise pollution during their construction. Despite extensive studies on underwater noise impacts in European and Western countries, local species targeted investigations are crucial for global application. We assessed how pile driving noise during OWF construction affected the behavior of three juvenile Korean fishes (Lateolabrax japonicus, Acanthopagrus schlegelii, and Platichthys stellatus) prevalent in East Asian seas. Pile driving noise playback induced rapid changes in L. japonicus and A. schlegelii swimming speed and group cohesion, with 40 % remaining un-habituated after 5 min. Notably, L. japonicus showed clear avoidance of the noise source, while P. stellatus behavior remained unchanged at all. Our findings confirm that even relatively low-intensity impulsive noise can alter fish behavior, potentially due to species-specific characteristics. Accumulated data will inform the development of strategies for smart OWF establishment, advancing sustainable energy practices.

Study on the wettability of microsphere-containing emulsion on different wood surfaces

ABSTRACT Applying microsphere-containing emulsion onto wood surfaces can enable microspheres to self-assemble into photonic crystal structures, generating structural colors that serve to decorate the wood surfaces. Wettability of the wood surface to emulsions significantly influences the construction of structural color layers. The wettability is further modulated by the inherent species-specific characteristics of the wood. To elucidate the differences in wettability of emulsions on wood surfaces, this study selected seven wood types, analyzed the changes in the contact angles of emulsions on their surfaces in different directions. It was found that the initial contact angle in parallel-fiber direction of wood was generally smaller than that in perpendicular-fiber direction, indicated that the parallel-fiber direction was more easily wetted by the emulsion. After the emulsion was dripped onto the wood surface and an initial contact angle was formed, it would rapidly spread and gradually penetrate into the wood. The properties of the main transport cells directly affected the change in contact angle. The emulsion transmission ability of hardwood was better than that of softwood, but this was not an advantage for assembling structural color layers. It was found that the change pattern conformed to the characteristics of an exponential function through non-linear fitting analysis.

Transcriptomic responses of Mediterranean sponges upon encounter with symbiont microbial consortia

BackgroundSponges (phylum Porifera) constantly interact with microbes. They graze on microbes from the water column by filter-feeding and they harbor symbiotic partners within their bodies. In experimental setups, sponges take up symbionts at lower rates compared with seawater microbes. This suggests that sponges have the capacity to differentiate between microbes and preferentially graze in non-symbiotic microbes, although the underlying mechanisms of discrimination are still poorly understood. Genomic studies showed that, compared to other animal groups, sponges present an extended repertoire of immune receptors, in particular NLRs, SRCRs, and GPCRs, and a handful of experiments showed that sponges regulate the expression of these receptors upon encounter with microbial elicitors. We hypothesize that sponges may rely on differential expression of their diverse repertoire of poriferan immune receptors to sense different microbial consortia while filter-feeding. To test this, we characterized the transcriptomic response of two sponge species, Aplysina aerophoba and Dysidea avara, upon incubation with microbial consortia extracted from A. aerophoba in comparison with incubation with seawater microbes. The sponges were sampled after 1 h, 3 h, and 5 h for RNA-Seq differential gene expression analysis.ResultsD. avara incubated with A. aerophoba-symbionts regulated the expression of genes related to immunity, ubiquitination, and signaling. Within the set of differentially-expressed immune genes we identified different families of Nucleotide Oligomerization Domain (NOD)-Like Receptors (NLRs). These results represent the first experimental evidence that different types of NLRs are involved in microbial discrimination in a sponge. In contrast, the transcriptomic response of A. aerophoba to its own symbionts involved comparatively fewer genes and lacked genes encoding for immune receptors.ConclusionOur work suggests that: (i) the transcriptomic response of sponges upon microbial exposure may imply “fine-tuning” of baseline gene expression as a result of their interaction with microbes, (ii) the differential response of sponges to microbial encounters varied between the species, probably due to species-specific characteristics or related to host’s traits, and (iii) immune receptors belonging to different families of NLR-like genes played a role in the differential response to microbes, whether symbionts or food bacteria. The regulation of these receptors in sponges provides further evidence of the potential role of NLRs in invertebrate host-microbe interactions. The study of sponge responses to microbes exemplifies how investigating different animal groups broadens our knowledge of the evolution of immune specificity and symbiosis.

Cnida Morphology as Taxonomic Tools within Tube-Dwelling Anemones (Ceriantharia, Cnidaria)

Cnidome morphology appears to be a valuable tool for anthozoan (Octocarallia, Ceriantharia, and Hexacorallia) taxonomy. Ceriantharian cnidomes consist of b-mastigophores, isorhizas, spirocysts, and ptychocysts, including different subtypes. The b-mastigophores are the most valuable ceriantharian cnidae for species identification. The Ceriantharian b-mastigophore terminology is congruent to the b-mastigophores of Carlgren, b-rhabdoids, including the “faltstück” of Schmidt, spirulae, and also potentially the penicilli of den Hartog. The apical tightly folded, inverted b-mastigophore shafts, the “faltstück”, are important species-specific characteristics due to their various patterns. The mesenterial structures known as craspedonemes, cnidorages, and acontioids also have high taxonomic value. Drop-shaped b-mastigophores might be characteristic nematocysts for mesenteries. The occurrence of isorhizas and striations on the inner ptychocyst capsule walls are other species’ characteristics. The morphological similarities of spirulae and penicilli to b-mastigophores within Hexacorallia are highlighted by naming spirulae and penicilli as b-mastigophores/spirulae and b-mastigophores/penicilli subtypes, respectively. The slight morphological distinction between spirulae and penicilli will doubtfully justify the suborders Spirularia and Penicillaria. The spirocysts presence in Ceriantharia and Hexacorallia indicates a closer relationship between Ceriantharia and Hexacorallia than between Ceriantharia and Octocorallia. Octocorallia are the only anthozoans without spirocysts. This work underlines the importance of cnidome morphological analysis for taxonomic identification and classification.

Species-specific histological characterizations of renal tubules and collecting ducts in the kidneys of cats and dogs.

The histomorphological features of normal kidneys in cats and dogs have been revealed despite the high susceptibility of cats to tubulointerstitial damage. Herein, the histological characteristics of the two species were compared. Cytoplasmic lipid droplets (LDs) were abundant in the proximal convoluted tubules (PCTs) of cats aged 23-27 months but scarce in dogs aged 24-27 months. LDs were rarely observed in the distal tubules (DTs) and collecting ducts (CDs) of either species, as visualized by the expression of Tamm-Horsfall protein 1, calbindin-D28K, and aquaporin 2. The occupational area ratio of proximal tubules (PTs) in the renal cortex was higher, but that of DTs or CDs was significantly lower in adult cats than in dogs. Single PT epithelial cells were larger, but PCT, DT, and CD lumens were significantly narrower in adult cats than in dogs. Unlike adults, young cats at 6 months exhibited significantly abundant cytoplasmic LDs in proximal straight tubules, indicating lipid metabolism-related development. Histochemistry of the 21 lectins also revealed variations in glycosylation across different renal tubules and CDs in both species. Sodium-glucose cotransporter 2 was expressed only in PTs, excluding the proximal straight tubules with few LDs in adult cats or the PCTs of young cats and adult dogs. These findings are crucial for understanding species-specific characteristics of renal histomorphology and pathogenesis.

Taylor's power law for freshwater fishes: Functional traits beyond statistical inevitability.

Taylor's power law (TPL) describes the expected range of parameters of the mean-variance scaling relationship and has been extensively used in studies examining temporal variations in abundance. Few studies though have focused on biological and ecological covariates of TPL, while its statistical inherences have been extensively debated. In the present study, we focused on species-specific features (i.e. functional traits) that could be influential to temporal TPL. We combined field surveys of 180 fish species from 972 sites varying from small streams to large rivers with data on 31 ecological traits describing species-specific characteristics related to three main niche dimensions (trophic ecology, life history, and habitat use). For each species, the parameters of temporal TPL (intercept and slope) were estimated from the log-log mean-variance relationships while controlling for spatial dependencies and biological covariates (species richness and evenness). Then, we investigated whether functional traits explained variations in TPL parameters. Differences in TPL parameters among species were explained mostly by life history and environmental determinants, especially TPL slope. Life history was the main determinant of differences in TPL parameters and thereby aggregation patterns, with traits related to body size being the most influential, thus showing a high contrast between small-sized species with short lifespans and large-bodied migratory fishes, even after controlling for phylogenetic resemblances. We found that life history traits, especially those related to body size, mostly affect TPL and, as such, can be determinants of temporal variability of fish populations. We also found that statistical effects and phylogenetic resemblances are embedded in mean-variance relationships for fish, and that environmental drivers can interact with ecological characteristics of species in determining temporal fluctuations in abundance.

Tree species identity drives soil carbon and nitrogen stocks in nutrient-poor sites

The establishment of mixed forest stands is an option to enhance soil organic carbon stocks and to protect forest ecosystems from various impacts of climate change. Increasing temperatures and drought potentially affect the vitality of the native coniferous Norway spruce (Picea abies), often used in mixed forests. We investigated the effects of a replacement of Norway spruce by Douglas fir (Pseudotsuga menziesii) admixed to European beech (Fagus sylvatica) on carbon (C) and nitrogen (N) concentrations and stocks, as well as the vertical distribution and changes in forest floor and mineral soil (down to 30 cm depth). Two regions with different soil conditions (loamy vs sandy soils textures) were selected, considering four sites in each region. Each site included a quintet of neighboring forest stands (>85 yrs) of European beech, Douglas fir, and Norway spruce stands as well as mixtures of beech with either Douglas fir or spruce. Our results showed that the C stocks of the organic layer were significantly influenced by tree species, while the C stock of the mineral soil varied among soil types. Total soil organic C stocks demonstrated notable species-specific characteristics, primarily driven by the elevated C stocks in the organic layer. In sandy soils, conifers and mixed forests store 10 % more C and N in the organic layer compared to loamy soils, whereas the C and N stocks under beech remained unaffected, regardless of the site condition. The interaction between species and sites was significant only for Douglas fir and mixed Douglas fir/beech, indicating that the impact of species on C and N varied across sites and was notably pronounced in sandy soils. The higher potential for carbon and N storage in mixed-species forests compared to pure stands emphasizes the capacity of mixed forests to provide valuable ecosystem services, enhancing C sequestration in sandy soils.

Classification of acacia, rape and multifloral Hungarian honey types

The composition of honey is mostly determined by the species-specific characteristics of flowering plants, which is reflected in the significant deviations in composition of honey varieties. The high-quality acacia honey is assessed based on both physical-chemical parameters and melissopalynology. The appearance of rape pollen in acacia honey makes the acacia honey be sorted into the multifloral honey category. Over carrying out melissopalynology, the149 samples of various honeys (acacia, rape and multifloral) have also been analysed by using physical-chemical and elemental analysis. Multivariate data analysis revealed that multifloral honey is much closer to acacia honey than to rape honey, as it can be observed from the examined unique parameters. By the PCA (Principal Component Analysis) analysis based on united set of physico-chemical and melissopalynology results the acacia and rape honey samples are entirely separated for each other, while multifloral honey samples are very close to acacia honey group and partially overlap with it. On ignoring the pollen analysis and based on the rest of the results, the multifloral honey category is almost indistinguishable from the declared and verified acacia honey category.

Habitat changes explain shifts in bird community composition in abandoned military training areas: Lessons for conservation

Military training areas are important biodiversity refuges and may serve as viable components of regional conservation networks, mainly due to the blocking of ecological succession by the disturbance regime creating a heterogeneous open habitat mosaic hosting many threatened species. However, European armies have undergone downsizing over the past decades and numerous military training areas have been abandoned. The assessment of the consequences of this abandonment for biodiversity would show us whether these abandoned areas still provide conservation benefits. For this purpose, we carried out bird surveys in 30 abandoned military training areas in Czechia. The surveys were performed in two periods (2009 and 2020–2021) to track small-scale changes in land cover and bird abundance after the areas were abandoned in the 1990s. We tested (i) whether changes in bird abundance were related to land cover changes and (ii) whether the observed bird species’ responses to the land cover changes can be explained by species-specific characteristics. Multivariate spatial analyses uncovered significant shifts in land cover composition towards a higher representation of dense shrub, forest and built-up areas at the expense of open areas represented by grassland and sparse shrub. These land cover changes explained a small but significant part of bird abundance variation across the areas. Correspondingly, species benefiting from these land cover changes were associated with dense scrub or forest, such as the Common Chiffchaff, Willow Warbler, or Eurasian Blackcap, whereas species suffering from these changes were associated with grassland, such as the European Stonechat and Eurasian Skylark. Phylogenetically informed interspecific analysis aiming to explain changes in bird abundance between periods confirmed that population declines were linked to open habitat preference, while population increases were linked to the preference for dense shrub and forest. In addition, we found that protected species increased their abundance, most likely due to the existence of conservation management that kept their habitats available. These patterns indicate that military training areas transform toward later successional stages after their abandonment with corresponding changes in bird community composition. However, these changes may not necessarily be negative provided that species of conservation concern enjoy the support of conservation management.

Collective effects of cell cleavage dynamics.

A conserved process of early embryonic development in metazoans is the reductive cell divisions following oocyte fertilization, termed cell cleavages. Cell cleavage cycles usually start synchronously, lengthen differentially between the embryonic cells becoming asynchronous, and cease before major morphogenetic events, such as germ layer formation and gastrulation. Despite exhibiting species-specific characteristics, the regulation of cell cleavage dynamics comes down to common controllers acting mostly at the single cell/nucleus level, such as nucleus-to-cytoplasmic ratio and zygotic genome activation. Remarkably, recent work has linked cell cleavage dynamics to the emergence of collective behavior during embryogenesis, including pattern formation and changes in embryo-scale mechanics, raising the question how single-cell controllers coordinate embryo-scale processes. In this review, we summarize studies across species where an association between cell cleavages and collective behavior was made, discuss the underlying mechanisms, and propose that cell-to-cell variability in cell cleavage dynamics can serve as a mechanism of long-range coordination in developing embryos.

Unsupervised AI reveals insect species-specific genome signatures.

Insects are a highly diverse phylogeny and possess a wide variety of traits, including the presence or absence of wings and metamorphosis. These diverse traits are of great interest for studying genome evolution, and numerous comparative genomic studies have examined a wide phylogenetic range of insects. Here, we analyzed 22 insects belonging to a wide phylogenetic range (Endopterygota, Paraneoptera, Polyneoptera, Palaeoptera, and other insects) by using a batch-learning self-organizing map (BLSOM) for oligonucleotide compositions in their genomic fragments (100-kb or 1-Mb sequences), which is an unsupervised machine learning algorithm that can extract species-specific characteristics of the oligonucleotide compositions (genome signatures). The genome signature is of particular interest in terms of the mechanisms and biological significance that have caused the species-specific difference, and can be used as a powerful search needle to explore the various roles of genome sequences other than protein coding, and can be used to unveil mysteries hidden in the genome sequence. Since BLSOM is an unsupervised clustering method, the clustering of sequences was performed based on the oligonucleotide composition alone, without providing information about the species from which each fragment sequence was derived. Therefore, not only the interspecies separation, but also the intraspecies separation can be achieved. Here, we have revealed the specific genomic regions with oligonucleotide compositions distinct from the usual sequences of each insect genome, e.g., Mb-level structures found for a grasshopper Schistocerca americana. One aim of this study was to compare the genome characteristics of insects with those of vertebrates, especially humans, which are phylogenetically distant from insects. Recently, humans seem to be the "model organism" for which a large amount of information has been accumulated using a variety of cutting-edge and high-throughput technologies. Therefore, it is reasonable to use the abundant information from humans to study insect lineages. The specific regions of Mb length with distinct oligonucleotide compositions have also been previously observed in the human genome. These regions were enriched by transcription factor binding motifs (TFBSs) and hypothesized to be involved in the three-dimensional arrangement of chromosomal DNA in interphase nuclei. The present study characterized the species-specific oligonucleotide compositions (i.e., genome signatures) in insect genomes and identified specific genomic regions with distinct oligonucleotide compositions.

Investigation of duty cycles for measuring activity in passive acoustic bat monitoring

Echolocating bats are important bioindicators that can be monitored effectively using passive acoustic monitoring (PAM) techniques. In PAM, duty-cycle-based temporal subsampling is often used to collect data at ON/OFF intervals to circumvent the limitations of recorder battery and storage capacity to enable long-term monitoring. However, potential bias introduced by temporal subsampling has not been systematically investigated for bat monitoring. Here, we use continuous audio recordings from the Union Bay Natural Area in Seattle in Summer 2022 to simulate the effects of temporal subsampling using different duty cycle parameters. We detected bat calls automatically using a deep learning model [Aodha et al., 2022, BioRxiv] and calculated three metrics as proxy for bat activity: number of calls, Activity Index (AI), and Bout Time Percentage (BTP). We found that although the number of calls and AI are more readily computable using the detected calls, BTP is likely a more accurate measure that relies less on the performance of automated call detection methods. In addition, reduced sampling for only a portion of the night (e.g., 4 hrs) was generally inadequate for capturing bat activity. Our results suggest that considering species-specific acoustic characteristics is crucial for reducing sampling bias for PAM of bats.

A study of annual tree-wise LiDAR intensity patterns of boreal species observed using a hyper-temporal laser scanning time series

This study introduces the annual tree-wise intensity patterns of three boreal tree species, silver birch (Betula pendula Roth.), Scots pine (Pinus sylvestris L.), and Norway spruce (P,icea abies H. Karst.), observed from a long-term hyper-temporal point cloud dataset collected with a permanent laser scanning (LiDAR) station. An annual LiDAR intensity pattern refers to the trend of variations of tree-wise calibrated LiDAR intensity values over the course of a year, primarily linked to species-specific phenological characteristics. Such pattern was discovered from hyper-temporal (76 observations between April 2020 and April 2021) high resolution (0.01 m 3D point spacing at 100 m distance) point cloud observations acquired using a single wavelength (1550 nm) static LiDAR system installed on a climate monitoring tower at the Hyytiälä forest research station in central Finland. A set of experiments was designed to explore the interactions among tree-wise calibrated LiDAR intensity, species, data quality, and observation dates. Thus, to provide practical suggestions for expectable accuracies of tree species classification using diverse types of LiDAR systems and data acquisition strategies. It was revealed that by combining high spatial resolution (up to 100,000 points/m2) with bi-weekly observations (two scans per week except winter period), the average tree species classification accuracy reaches 96.8% for the three boreal tree species in the study area, where the few misclassified cases are attributed to inaccurate individual tree segmentation. This suggests that the annual tree-wise LiDAR intensity patterns, which reflects the tree-wise phenological dynamics, are robust and species-specific. When the spatial resolution was reduced to 5 points/ m2, the average accuracy of species classification among the three studied species reached 85% when using bi-temporal data from spring and autumn. Our analysis further indicates that arranging data acquisition with a two-week variability in late autumn and late spring could yield higher accuracy in species classification. Furthermore, our study revealed the importance of subcanopy information for species classification, specifically in distinguishing different coniferous species. When limited to upper canopy data (as in simulated airborne LiDAR scenarios), achieving a tree species classification accuracy of over 80% required either high point density (e.g. 8000 points/m2) combined with bi-temporal collection in a year, or low point density (5 points/ m2) with a dense time series (e.g., 76 time points within a year), which showcased the possibility to compensate low spatial resolution with high temporal resolution, and vice versa, in capturing species-specific phenological characteristics of trees.

First Report on Three Lesser-Known Magelona Species from Korean Waters: Details of All Thoracic Chaetigers and Methyl Green Staining Patterns

This study assessed the taxonomic statuses of three lesser-known Magelona F. Müller, 1858 species collected from intertidal to sublittoral habitats in Korean coastal waters, basing identification on morphological features and comparing them with their closest congeners. We present a comprehensive description and illustration of taxonomically significant and standardized characters, covering all thoracic chaetigers of three newly discovered Magelona species from Korea. Within the documented Korean Magelona species, these three species exhibit the following distinctive characteristics. Magelona sachalinensis Buzhinskaja, 1985, possess diminutive superior dorsal lobes in the initial four chaetigers and specialized chaetae on chaetiger 9; Magelona lenticulata Gallardo, 1968, is characterized by foliaceous postchaetal superior dorsal lobes in chaetigers 1–8; and Magelona cf. longicornis Johnson, 1901, is distinguished by notably elongated noto- and neuropodial postchaetal lamellae on chaetiger 9. Methyl green staining patterns showed species-specific characteristics and were confirmed to be effective in distinguishing the examined Korean species from each other and useful for making comparisons with previously reported Magelona species. Our study suggests that further comprehensive research on the morphological and genetic characteristics of Magelona species will enhance our understanding of their diversity.

Molecular Discrimination for Two Anadenanthera Species of Seasonally Dry Tropical Forest Remnants in Brazil

Anadenanthera colubrina (Acol) and Anadenanthera peregrina (Aper) (Fabaceae) are two species popularly known as “angicos” that occur in seasonally dry tropical forest (SDTR) remnants in Brazil. Since many of the morphological characteristics of Anadenanthera species are superimposed and species-specific characteristics are difficult to observe, their identification is complex. Therefore, in this research, a set of ISSR (Inter-Simple Sequence Repeat Polymorphic DNA) molecular markers was standardized, aiming to characterize A. colubrina and A. peregrina species and study the genetic diversity of three populations of each species located within a fragmented landscape in São Paulo State, southeastern Brazil. Seven ISSR markers (UBC 2, 820, 851, 858, 864, 866, and 886) that show polymorphism for both species were used. The Bayesian cluster, PCoA and dendrogram analysis show that the total sample divides into two groups corresponding to each species. Also, a genetic divergence (Gst = 0.143) and a high number of migrants per generation (Nm = 3.0) were detected between them. The Acol populations showed significantly higher values for mean genetic diversity (h = 0.30) than Aper (h = 0.25) (p < 0.05). The ISSR marker UBC2250bp showed species-specific electrophoretic fingerprints for both species. The molecular tools generated herein support the conservation of Anadenanthera sp. and the restoration of vegetation where the species naturally occurs.