Species Of Polygonaceae Research Articles

Comparative Analyses of the Complete Mitogenomes of Two Oxyria Species (Polygonaceae) Provide Insights into Understanding the Mitogenome Evolution Within the Family

Oxyria (Polygonaceae) is a small genus only comprising two species, Oxyria digyna and O. sinensis. Both species have well-documented usage in Chinese herbal medicine. We sequenced and assembled the complete mitogenomes of these two species and conducted a comparative analysis of the mitogenomes within Polygonaceae. Both O. digyna and O. sinensis displayed distinctive multi-branched conformations, consisting of one linear and one circular molecule. These two species shared similar gene compositions and exhibited distinct codon preferences, with mononucleotides as the most abundant type of simple sequence repeats. In the mitogenome of O. sinensis, a pair of long forward repeat sequences can mediate the division of molecule 1 into two sub-genomic circular molecules. Homologous sequence analysis revealed the occurrence of gene transfer between the chloroplast and mitochondrial genomes within Oxyria species. Additionally, a substantial number of homologous collinear blocks with varied arrangements were observed across different Polygonaceae species. Phylogenetic analysis suggested that mitogenome genes can serve as reliable markers for constructing phylogenetic relationships within Polygonaceae. Comparative analysis of eight species revealed Polygonaceae mitogenomes exhibited variability in gene presence, and most protein-coding genes (PCGs) have undergone negative selection. Overall, our study provided a comprehensive overview of the structural, functional, and evolutionary characteristics of the Polygonaceae mitogenomes.

Factors contributing to organelle genomes size variation and the intracellular DNA transfer in Polygonaceae

The use of complete organelle genomes, including chloroplast and mitochondrial genomes, is a powerful molecular method for studying biological evolution and gene transfer. However, in the case of Polygonaceae, an important family with numerous edible, medicinal, and ornamental species, the mitochondrial genomes of only three species have been sequenced and analyzed. In this study, we present the mitochondrial and chloroplast genomes of two important Tibetan medicinal plants, Bistorta viviparum and B. macrophyllum. All the organelle genomes are assembled into a single circular structure and contain a common set of 32 protein-coding genes (PCGs). Some genes such as rps2 and ndhF were found to have high nucleotide polymorphism (Pi) in the chloroplast genomes, while cox1, mttB and rps12 showed pronounced Pi values in the mitochondrial genomes. Furthermore, our analysis revealed that most chloroplast genes and mitochondrial PCGs in Polygonaceae plants are under purifying selection. However, a few genes, including the chloroplast gene psaJ and the mitochondrial genes ccmFc, atp8 and nad4, showed positive selection in certain Polygonaceae plants, as indicated by a Ka/Ks ratio greater than one. Structural variation analysis revealed a wealth of differences between the mitochondrial genomes of five Polygonaceae species, with a particularly notable large-scale inversion observed between Reynoutria japonica and Fallopia aubertii. Furthermore, an analysis of the homologous sequences in the chloroplast and mitochondrial genomes revealed that the rps7 has been transferred from the chloroplast to the mitochondrial genome in all five Polygonaceae species. Finally, ecological niche models were constructed for B. viviparum and B. macrophyllum, indicating that mean annual temperature and altitude are the main climatic factors influencing the distribution of both species. Although the current distribution of B. viviparum is significantly wider than that of B. macrophyllum, projections suggest that the optimal growth ranges of both species will expand in the future, with B. macrophyllum potentially exceeding B. viviparum. This study not only contributes to the plastid genome database for Polygonaceae plants, but also provides theoretical insights into the adaptive evolution of these plants.

Functional Properties and Components of Koenigia alpina Extract.

Koenigia alpina (All.) T.M.Schust. & Reveal (alpine knotweed) is a perennial herb belonging to the Polygonaceae family. Several studies have examined Polygonaceae species' potential applications as cosmeceutical materials; however, the potential of K. alpina as a cosmeceutical has not yet been studied. Hydrogen peroxide (H2O2) and lipopolysaccharide were used to induce an inflammatory response in RAW 264.7 cells. 2,2-Diphenyl-1-picrylhydrazyl (DPPH) radicals and H2O2 were used to evaluate the free-radical scavenging activity of K. alpina extract and its protective effect against reactive oxygen species (ROS)-induced cell damage. The whitening, antiaging, and cell proliferation/migration effects of the extracts were evaluated via tyrosinase inhibition, collagenase/elastase inhibition, and wound healing assays, respectively. The anti-inflammatory effect was confirmed by evaluating nitric oxide (NO) production in RAW 264.7 cells. High-performance liquid chromatography (HPLC), UV, and MS/MS were used to determine the main components of the extract and fractions. The ethyl acetate (EA) fraction and its aglycone fraction showed very high free-radical scavenging activities (47.5 and 47.1µg/mL, respectively). The extract/fractions also showed significant tyrosinase inhibition (IC50 = 0.38mg/mL in EA fraction), collagenase inhibition (IC50 = 0.21mg/mL in EA fraction), and elastase inhibition (IC50 = 0.57mg/mL in aglycone fraction). NO production in lipopolysaccharide-induced RAW 264.7 cells was inhibited by the extract/fractions. The extract also promoted the closure of scratch wounds in HaCaT cells. The K. alpina extract/fractions contained cardamonin, quercetin, and quercitrin. K. alpina extracts/fractions showed antioxidant, antiaging, whitening, and anti-inflammatory activities, suggesting they may have potential as antiaging cosmeceuticals.

\(\textit{Persicaria runcinata}\), a new generic record for Vietnam, and a key to Vietnamese polygonaceae

Persicaria runcinata is reported from Lai Chau provinces in Northern Vietnam, representing the first record of this species and the genus Persicaria in the country. Detailed photographic illustrations of studied specimens are provided. A key to the Vietnamese genera and species of Polygonaceae is presented.

Complete Genome and Comprehensive Analysis of Knorringia sibirica Chloroplast

Knorringia sibirica is a typical species of Polygonaceae with high medicinal and ecological value. However, there are few available phylogenetic and genetic studies about the chloroplast genome of K. sibirica. In the current study, a comprehensive examination of the chloroplast genome of K. sibirica was performed. The K. sibirica chloroplast genome is 161,384 bp, circular with a typical quadripartite structure, and comprised of guanine + cytosine content of 37.63%. The genome consists of 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Seventy simple sequence repeats were identified in the genome. When compared with three closely related species, the result revealed that the chloroplast genome of K. sibirica was conserved in genome composition and structure. The specific sites in the genome suitable for DNA barcodes were identified by calculation of the nucleotide diversity. Finally, a phylogenetic tree of 49 species in Polygonaceae was constructed using the whole chloroplast genome. The phylogenetic analysis suggested that Knorringia is an independent genus in the Polygonea tribe. This research could provide support for the utilization of genetic sources and the evolutionary study of K. sibirica.

DNA barcoding combined with high-resolution melting analysis to discriminate rhubarb species and its traditional Chinese patent medicines.

Introduction: Rhubarb is a frequently used and beneficial traditional Chinese medicine. Wild resources of these plants are constantly being depleted, meaning that rhubarb products have been subjected to an unparalleled level of adulteration. Consequentially, reliable technology is urgently required to verify the authenticity of rhubarb raw materials and commercial botanical drugs. Methods: In this study, the barcode-DNA high-resolution melting (Bar-HRM) method was applied to characterize 63 rhubarb samples (five Polygonaceae species: Rheum tanguticum, Rh. palmatum, Rh. officinale, Rumex japonicus and Ru. sp.) and distinguish the rhubarb contents of 24 traditional Chinese patent medicine (TCPM) samples. Three markers, namely ITS2, rbcL and psbA-trnH, were tested to assess the candidate DNA barcodes for their effectiveness in distinguishing rhubarb from its adulterants. A segment from ITS2 was selected as the most suitable mini-barcode to identify the botanical drug rhubarb in TCPMs. Then, rhubarbs and TCPM samples were subjected to HRM analysis based on the ITS2 barcode. Results: Among the tested barcoding loci, ITS2 displayed abundant sites of variation and was effective in identifying Polygonaceae species and their botanical origins. HRM analysis based on the ITS2 mini-barcode region successfully distinguished the authenticity of five Polygonaceae species and eight batches of TCPMs. Of the 18 TCPM samples, 66.7 % (12 samples) were identified as containing Rh. tanguticum or Rh. officinale. However, 33.3 % were shown to consist of adulterants. Conclusions: These results demonstrated that DNA barcoding combined with HRM is a specific, suitable and powerful approach for identifying rhubarb species and TCPMs, which is crucial to guaranteeing the security of medicinal plants being traded internationally.

Interpopulation variation in seed traits of five Polygonaceae

Interpopulation variability in seed traits may drive the regeneration capacity of a species to colonize different environments. In the present study, we evaluated the variation in seed physical traits (mass / size, water imbibition, shape index) and physiological traits (germination) of five Polygonaceae species. Seeds of Polygonum lapathifolium var. salicifolium, P. lapathifolium, Reynoutria japonica, Rumex trisetifer, and R. obtusifolius were collected from two or three populations in Jiujiang, China. Physical seed traits were measured before germination tests conducted under different combinations of light and temperatures. Most species had a significant variation in seed physical and physiological traits, although populations are geographically close. Interpopulation variation in seed traits appeared to be species-specific, with the highest variation for R. japonica and lowest for R. trisetifer seeds. Germination response to temperature and light conditions also varied among species and populations, being mostly inhibited in the dark treatments. The light dependence of germination can be related to the small seed size, except for the round-seeded Rumex, depending on the temperature regime. Optimal temperature ranges mainly varied from 10/20°C to 25/35°C, with significant decreases in germination percentage at both coolest and warmest extremes. Germination requirements seem to be related to altitudinal gradients in populations of P. lapathifolium and R. japonica seeds.

A new species of Eriogonum (Polygonaceae) from the Cape region of the Baja California Peninsula, Mexico

We describe and illustrate Eriogonum calaverense, a new species of Polygonaceae from the southern tip of the Baja California peninsula, Mexico. It is known only from the granitic rock crevices of Cerro de la Calavera, and others in the vicinity, in the southern Cape region mountains. This species is characterized by its suffrutescent habit, as well as by its densely tomentose indumentum, which on its leaves is manifested by different color shades on the upper and lower sides. We present a detailed botanical description, illustrations, and photographs of this new taxon. Since this species seems to be linked to special edaphic conditions, we provide some locations where it might also be found with additional field exploration. The exact taxonomic placement of this new taxon within the genus Eriogonum is still in question and future cytogenetic and molecular data might help to address this problem.

Suitability of Amaranthaceae and Polygonaceae species as food source for the sugar beet weevil Asproparthenis punctiventris Germar

This study explores the food plant spectrum of the sugar beet weevil (Asproparthenis punctiventris Germar; Coleoptera: Curculionidae), one of the most important pests of sugar beet (Beta vulgaris subsp. vulgaris Altissima group). It examines the potential of various weeds and other plants to maintain populations of A. punctiventris adults and larvae outside sugar beet fields. To this end, leaf consumption of females and males on twelve Amaranthaceae and six Polygonaceae species was compared over a 24-h period in a laboratory environment. Both sexes consumed the greatest amount of leaf mass from Beta spp. and on average about a third less from Atriplex spp., indicating that these plants have the highest nutritional value for A. punctiventris. Weevils consumed between 30 and 60% of the amount of A. retroflexus and Chenopodium spp. than they fed on sugar beet leaves. Like Spinacia oleracea (Amaranthaceae), plant species of the Polygonaceae family were hardly or not at all fed on. Mated females generally consumed more leaf mass than unmated, especially from Chenopodium spp. and A. retroflexus, i.e. plants with low feeding value. Experiments with potted plants revealed that the most and heaviest 4th instar larvae developed on sugar beet, while fewer individuals with lesser weight were found on B. vulgaris subsp. maritima and A. hortensis. Very few larvae were able to develop on C. album, and none on A. retroflexus. To prevent promotion of pest population, special attention should be paid to the control of weeds from the Amaranthaceae family in sugar beet growing areas.

Plastome comparison and phylogenomics of Fagopyrum (Polygonaceae): insights into sequence differences between Fagopyrum and its related taxa

BackgroundFagopyrum (Polygonaceae) is a small plant lineage comprised of more than fifteen economically and medicinally important species. However, the phylogenetic relationships of the genus are not well explored, and the characteristics of Fagopyrum chloroplast genomes (plastomes) remain poorly understood so far. It restricts the comprehension of species diversity in Fagopyrum. Therefore, a comparative plastome analysis and comprehensive phylogenomic analyses are required to reveal the taxonomic relationship among species of Fagopyrum.ResultsIn the current study, 12 plastomes were sequenced and assembled from eight species and two varieties of Fagopyrum. In the comparative analysis and phylogenetic analysis, eight previously published plastomes of Fagopyrum were also included. A total of 49 plastomes of other genera in Polygonaceae were retrieved from GenBank and used for comparative analysis with Fagopyrum. The variation of the Fagopyrum plastomes is mainly reflected in the size and boundaries of inverted repeat/single copy (IR/SC) regions. Fagopyrum is a relatively basal taxon in the phylogenomic framework of Polygonaceae comprising a relatively smaller plastome size (158,768–159,985 bp) than another genus of Polygonaceae (158,851–170,232 bp). A few genera of Polygonaceae have nested distribution of the IR/SC boundary variations. Although most species of Fagopyrum show the same IRb/SC boundary with species of Polygonaceae, only a few species show different IRa/SC boundaries. The phylogenomic analyses of Fagopyrum supported the cymosum and urophyllum groups and resolved the systematic position of subclades within the urophyllum group. Moreover, the repeat sequence types and numbers were found different between groups of Fagopyrum. The plastome sequence identity showed significant differences between intra-group and inter-group.ConclusionsThe deletions of intergenic regions cause a short length of Fagopyrum plastomes, which may be the main reason for plastome size diversity in Polygonaceae species. The phylogenomic reconstruction combined with the characteristics comparison of plastomes supports grouping within Fagopyrum. The outcome of these genome resources may facilitate the taxonomy, germplasm resources identification as well as plant breeding of Fagopyrum.

The complete chloroplast genome of Persicaria perfoliata and comparative analysis with four medicinal plants of Polygonaceae.

Polygonaceae is a large family of medicinal herbs that includes many species used as traditional Chinese medicine, such as Per sicaria per foliata. Here, we sequenced the complete chloroplast genome of P. per foliata using Illumina sequencing technology with the purpose of providing a method to facilitate accurate identification. After being annotated, the complete chloroplast genome of P. per foliata was compared with those of Fagopyrum tataricum, Per sicaria chinensis, Fagopyrum dibotrys, and Fallopia multiflora. The complete chloroplast genome of P. per foliata is 160 730bp in length, containing a small single-copy region of 12 927bp, a large single-copy region of 85 433bp, and a pair of inverted repeat regions of 62 370bp. A total of 131 genes were annotated, including 8 rRNA genes, 34 tRNA genes, and 84 protein-coding genes. Forty-two simple sequence repeats and 55 repeat sequences were identified. Mutational hotspot analyses indicated that five genes (matK, ndhF, ccsA, cemA, and rpl20) could be selected as candidates for molecular markers. Moreover, phylogenetic analysis showed that all the Polygonaceae species formed a monophyletic clade, and P. per foliata showed the closest relationship with P. chinense. The study provides valuable molecular information to accurately identify P. per foliata and assist in its development and application.

Reproductive Ecology of Distylous Shoreside Polygonum criopolitanum Hance

In this study, distyly was clearly confirmed in Polygonum criopolitanum Hance, which exhibited strict self-incompatibility. Unlike other distylous species, style-morph ratios of P. criopolitanum often deviated obviously from 1:1, and many populations were solely composed of long or short stylous flowers; the 1:1 style-morph ratio was occasionally found in very large populations. P. criopolitanum was dimorphic for intrinsic features such as style height and anther height and ancillary features such as pollen size and number. The L-morph flowers produced a significantly smaller and higher number of pollen grains than the S-morph flowers, and the stigma papillae of both morphs were not significantly different. We nearly found no seed sets in most wild populations and very low seed sets occasionally occurred in large populations, which was different from other species of Polygonaceae. Mating experiments showed that P. criopolitanum has a strict self-incompatibility system and clonal propagation was more common than sexual propagation, which was adaptive with the unisexual wild populations. Hygrocolous habitat, 20–60% soil water content, and height gap less than 4 m to the adjacent water were the main limiting factors for the distribution of P. criopolitanum.

'Candidatus Liberibacter' Pathosystems at the Forefront of Agricultural and Biological Research Challenges.

'Candidatus Liberibacter' Pathosystems at the Forefront of Agricultural and Biological Research Challenges.

Botrytis polygoni, a new species of the genus Botrytis infecting Polygonaceae in Gansu, China

ABSTRACT A new species, Botrytis polygoni, was isolated from several species of Polygonaceae in 2011 and 2012 in Tongwei County, Gansu Province, China. The species infects Fagopyrum esculentum, F. tataricum, and Fallopia convolvulus, causing brown leaf spots and large blotches with concentric rings in the field. Botrytis polygoni is morphologically characterized by conidia spherical, unicellular, hyaline to pale brown or brown, (10.2–)14.3–21.4(–23.5) μm; and sclerotia black, spherical to subspherical, allantoid, or irregular-shaped, 0.2–4.1 × 0.1–3.0 mm. Comparison of the nuc rDNA internal transcribed spacer region (ITS1-5.8S-ITS2) sequences confirmed its placement in the genus Botrytis. Phylogenetic analysis based on the protein-coding genes glyceraldehyde 3-phosphate dehydrogenase (G3PDH), heat shock protein 60 (HSP60), and DNA-dependent RNA polymerase subunit II (RPB2) showed that the new species is clustered close but separate from Botrytis pyriformis, which was distant from 37 other Botrytis species and 17 undescribed species. Pathogenicity tests showed that the new species has aggressive pathogenicity to four species of Polygonaceae, specifically Fag. tataricum, Fal. convolvulus, Polygonum sibiricum, and Pol. aviculare, weak pathogenicity to Vicia faba in the Fabaceae, and no pathogenicity to eight other tested plants: Amaranthus retroflexus, Cirsium arvense, Convolvulus arvensis, Kalanchoe blossfeldiana, Lagopsis supine, Mentha canadensis, Plantago asiatica, and Raphanus sativus.

Complete chloroplast genome sequence determination of Rheum species and comparative chloroplast genomics for the members of Rumiceae

Complete plastomes of Rheum species facilitated to clarify the phylogeny of Polygonaceae, and comparative chloroplast genomics contributed to develop genetic markers for the authentication of Rheum species. Rheum (Polygonaceae) is widely distributed throughout the temperate and subtropical areas of Asian interior. Rheum species are usually perennial herbs, and half of them are endemic to China with important medicinal properties. On account of similar morphological characteristics, species delimitation of Rheum still remains unclear. Chloroplast genomes of eight Rheum species, Rumex crispus and Oxyria digyna were characterized. Based on the comparison of genome structure of these species and the two published Rheum species, it is shown that plastome sequences of these species are relatively conserved with the same gene order, and three Sect. Palmata species remarkably showed high sequence similarities. Some hotspots could be used to discriminate the Rheum species, and 17 plastid genes were subject to positive selection. The phylogenetic analyses indicated that all the Polygonaceae species were clustered in the same group and showed that Rheum species, except for Rheum wittrockii, formed a monophyletic group with high maximum parsimony/maximum likelihood bootstrap support values and Bayesian posterior probabilities. The molecular dating based on plastomes indicated that the divergences within Polygonaceae species were dated to the Upper Cretaceous period [73.86-77.99 million years ago (Ma)]. The divergence of Sect. Palmata species was estimated to have occurred around 1.60Ma, indicating that its diversification was affected by the repeated climatic fluctuation in the Quaternary.

Morphological and anatomical studies on some species of Polygonaceae in Egypt

Morphological and anatomical studies on some species of Polygonaceae in Egypt

Use of biological fertilizers in white mustard crops in the non-Chernozem zone of Russia

This article presents statistical parameters for the cultivation of oilseeds in Russia. Ryazan region is not among the regions that are traditional producers of vegetable oil, but recently oilseed production has been actively developing in the region. Gradually developing and processing oilseeds. In 2018, the area under oilseeds in Ryazan region was 121.1 thousand hectares (+ 25.7 thousand hectares by 2017). The prospects for the use of mustard in the region are noted. Currently, the production of mustard grain in Ryazan region has decreased from 18.6 to 13.1 thousand hectares, which indicates an underestimation of the significance of this crop. The study of multicomponent liquid fertilizers in the field confirmed their beneficial effect on the growth and development of white mustard. Foliar dressing according to the vegetation phases contributed to better preservation of plants, due to this, and obtaining the greatest yield of white mustard seed. The maximum number of seeds was obtained on variety Lucius - 13.9 dt/ha, with the effect of Azotovit + Phosphatovit + RauAktiv - 16.5 dt/ha. The effective action of Galleon herbicide on such weed families as Asteraceae, Labiatae, Solanaceae, some species of Polygonaceae and Chenopodiaceae was observed.

The complete chloroplast genome of a medicinal resource plant (Rumex crispus)

Rumex crispus has high medicinal value which belongs to the family Polygonaceae. We sequenced the complete chloroplast genome of R. crispus, which is 158,851 bp in length. A total of 111 unique genes have been predicted in the chloroplast genome of this species, consisting of 77 protein-coding sequences, 30 tRNA and 4 rRNA genes. A maximum likelihood (ML) phylogenetic tree based on 80 protein-coding genes of 18 Polygonaceae species showed the phylogenetic position of R. crispus within the family Polygonaceae. These results facilitate population and biological studies of R. crispus and benefit further investigations of this important species.

Tepal surface micromorphology and its taxonomic implications in some species of Polygonaceae in Egypt

Tepal micromorphological characters of 15 species belonging to six genera of the tribe polygonoideae (Polygonaceae) in Egypt has been investigated using Scanning Electron Microscope (SEM) to assess the value and utility of the micromorphological topology of the tepals as an additional source of evidence in diagnosis and separation of Polygonaceae. The tepal surface have revealed some striking differences among the studied species. Four main patterns of sculpturing can be recognized viz. Favulariate, tuberculate, scalariform, and irregular reticulate. The cell surface is marked with striae, which exhibit various patterns of distribution. The microcharacters of tepals are discussed in relation to taxonomy and proved their significance in distinction between the studied taxa at the generic and specific levels. An identification key based on the tepal surface feature is provided.

畑地雑草の生態と防除技術 : 第2報 タデ科雑草の出芽特性

畑地雑草の生態と防除技術 : 第2報 タデ科雑草の出芽特性