Duck Species Research Articles

Variation in diurnal and nocturnal movements distances revealed in wintering dabbling ducks in the Mississippi Alluvial Valley

Movement of waterfowl during winter is central to resource acquisition and mortality avoidance, despite the imminent risk to survival and overall fitness induced by hunting disturbance and energy expenditure. Weather and other environmental conditions may influence movement by altering resource needs, in which ducks must balance the trade‐offs of resource acquisition and risk management. We compared how environmental factors influenced total daily diurnal and nocturnal movement distances of three dabbling duck species wintering in the Mississippi Alluvial Valley. We estimated total daily diurnal and nocturnal movement distances of green‐winged teal (Anas crecca; n = 51), American wigeon (Mareca americana; n = 38), and mallards (Anas platyrhynchos; n = 31) using backpack transmitters during the winter period of February–November 2020–2021 and 2021–2022. We used linear mixed effects models to model the influence of weather, hunt season, day of season, and sex on total diurnal and nocturnal movement distances by species. Green‐winged teal moved 7.7% further during the nocturnal period (x̅ = 3.38 km; SE = 0.32; p < 0.001) than during the diurnal period (x̅ = 3.13 km SE = 0.10), while American wigeon and mallards moved 36.6% (x̅ = 4.95 km; SE = 0.20; p < 0.001) and 28.1% (x̅ = 4.39 km; SE = 0.23; p < 0.001) further during the diurnal period than the nocturnal period (x̅ = 3.42 km, SE = 0.28 and x̅ = 3.31 km, SE = 0.22), respectively. Fine‐scale movement distances during the diurnal period were weakly associated with environmental covariates for all species. Conversely, moon illumination influenced nocturnal movement distances for all species. Nightly movement distances of mallards increased by 2.1 times from new to full moon during the hunting season. Conversely, there were no changes in nocturnal movement distance during pre‐hunt and post‐hunt periods when hunting disturbance was absent. In the face of intensifying environmental pressures on movement patterns in dabbling duck populations, this research demonstrates a behavioral response to moon illumination as a mechanism for moving about the landscape for resource acquisition in the presence of human disturbances that induce risk, such as hunting.

Molecular Screening and Characterization of Enteric Protozoan Parasites and Microsporidia in Wild Ducks from Portugal.

Enteric parasites pose significant threats to both human and veterinary health, ranking among the top causes of mortality worldwide. Wild migratory waterfowl, such as ducks, may serve as hosts and vectors for these parasites, facilitating their transmission across ecosystems. This study conducted a molecular screening of enteric parasites in three species of wild ducks of the genus Anas (A. acuta, A. platyrhynchos and A. crecca) from Portugal, targeting Blastocystis sp., Balantioides coli, Cryptosporidium spp., Encephalitozoon spp., and Enterocytozoon bieneusi. Fecal samples from 71 ducks were analyzed using PCR and sequencing techniques. The results revealed a 2.82% occurrence of Blastocystis sp. subtype 7 and Cryptosporidium baileyi, marking the first molecular detection of these pathogens in wild ducks in Portugal. While previous studies have documented these parasites in Anas spp. in other regions, this study contributes novel data specific to the Portuguese context. No evidence of Balantioides coli, Encephalitozoon spp. or Enterocytozoon bieneusi was found. These findings highlight the potential role of migratory ducks as vectors for zoonotic protozoa, emphasizing the need for enhanced surveillance of avian populations to mitigate cross-species transmission risks. Further research is warranted to understand the global public health implications associated with migratory waterfowl.

Home range sizes and nychthemeral habitat uses by the Northern Shoveler (Spatula clypeata) on prenuptial stopovers in Vendée marshes, western France

The wetlands of Marais breton (MB) and Marais poitevin (MP) on the French Atlantic coast are commonly used by several duck species, especially as stopover sites during the prenuptial migration. Understanding the ecological requirements of Anatidae at spring stopover sites is important to define appropriate management actions that might have a carry over effect on the subsequent reproduction success. This study focused on the Northern Shoveler (Spatula clypeata), a species that regularly visits the two marshes during spring and fall migrations and is highly dependent on freshwater invertebrates as the food resource. Fifteen Northern Shovelers were equipped with GPS/GSM tags and monitored during their stopover in both marshes in 2020 and 2021. The aims of the study were to understand the habitat use on stopover sites and relate home range (HR) size with characteristics of the feeding habitats (such as freshwater invertebrates’ density and diversity). The HR area of the studied individuals was mainly constituted of ponds in MB (83% of the HR) and wet meadows in MP (71% of the HR). The Northern Shovelers equipped with tag spent more than 72 consecutive hours in 31 wetlands, using them during the day, at night or all day. The diurnal visited sites were deep ponds that were sparsely vegetated and dominated by microcrustaceans, whereas the nocturnal visited sites were wet meadows or ponds with high aquatic vegetation cover and high invertebrate taxonomic diversity. The 31 described sites appeared to be rich in freshwater invertebrates, with no significant difference in invertebrate densities between the diurnal and nocturnal sites. HR sizes were highly homogenous between the two study sites (MB and MP), between sexes or between age classes. In conclusion, according to this study, an appropriate HR for the Northern Shoveler at spring stopover is 8.49 ± 5.95 km² (mean ± standard error).

AVIAN HAEMOSPORIDIANS IN GREATER SCAUP (AYTHYA MARILA) AND LESSER SCAUP (AYTHYA AFFINIS) FROM WISCONSIN.

Avian haemosporidians are a diverse group of protozoan parasites that infect a wide range of host species. Waterfowl are an ecologically and economically important group of hosts that have been underrepresented in studies of haemosporidians. Diving ducks have unique life history traits, and morphological, behavioral, and dietary differences separate them from more common dabbling ducks. Greater scaup (Aythya marila) and lesser scaup (Aythya affinis) are closely related diving ducks with declining population trends in North America. To better understand the diversity of haemosporidians within diving ducks and factors related to host infections in scaup, we surveyed 82 hunter-donated waterfowl from 8 species of divers, sea ducks, and dabblers from Green Bay, Wisconsin from 2019 to 2021. We used molecular detection methods and phylogenetic and statistical analyses to describe the diversity, host associations, and prevalence of haemosporidians. We detected 14 unique genetic lineages of haemosporidians, including 4 novel lineages. We identified at least 1 lineage of haemosporidian in each of the 8 host species of divers, sea ducks, and dabblers examined. Lesser scaup had more diverse haemosporidian communities than did greater scaup, but lineages showed no clustering among these hosts when incorporated in phylogenetic analyses with lineages from other Nearctic waterfowl. Female lesser scaup had the highest infection prevalence, but there was no effect of host age or year of sampling. Our findings underscore the importance of species and sex differences that could lead to a higher risk of infections. Our results also fill an important geographical sampling gap for haemosporidians along a key migratory route. Increased monitoring of haemosporidians in waterfowl could contribute to insights into parasite evolution and ecology and the conservation and management of host populations.

Trace elements in liver and muscle tissues from wild waterfowls in Australia: Risk associated with human consumption in a global context

Trace elements in game meats remain a point of concern for both the public and policymakers alike due to the human health implications if levels present are above guideline limits. This study aimed to: (1) determine trace element concentrations (As, Cd, Hg, Pb Cr, Cu, Se, Zn) in edible portions (breast meat and liver) of the four most frequently hunted duck Anatidae species inhabiting wetlands in Victoria, Australia, to identify the risk to human health from consumption; (2) investigate landscape-scale variables that may influence the detected concentrations and; (3) review the studies available (n = 41) in duck liver and muscle tissues from the 1970s to 2024, to contextualise the detected concentrations found on a global scale. Our study shows that ducks in Victoria had trace element concentrations below tolerable daily intake (TDI) guidelines for human health with one exception: notably high Hg in a filter-feeding specialist, the Pink-eared duck (Malacorhynchus membranaceus). Yet, the only trace element concentrations that were influenced by proximity to populated centres, were As and Zn. Compared to international reports, Pb concentrations in livers and muscle of Victorian waterfowl were lower, however, Pink-eared ducks had higher Hg than other duck (Anas spp.) species. Review of the worldwide data indicate that Pb concentrations in liver tissues from all Anas species have declined from the 1970s to 2024. This is the first study to identify this trend at a global scale. International movements towards Pb-shot bans, along with phasing out of Pb in gasoline and paint are the most likely cause of declining concentrations in tissues of wild waterfowl. These findings strongly underscore the importance of legislative efforts to limit trace elements entering the environment.

Postbreeding ecology of wood ducks in the Illinois River Valley

AbstractThe wood duck (Aix sponsa) consistently ranks within the top 5 harvested duck species for both Illinois and the Mississippi Flyway. While substantial research has been done on wood ducks, especially their breeding ecology, few studies have investigated the postbreeding ecology of the species. We captured and marked wood ducks with either a very high frequency (VHF) radio transmitter or a solar‐charged global system of mobile communication (GSM) transmitter during the postbreeding period from August through September 2018–2020. Capture locations were within the La Grange Pool of the Illinois River extending from near Pekin, Illinois to the La Grange Lock and Dam near Meredosia, Illinois, USA. We used conventional radio‐telemetry techniques to track wood ducks to determine cover type use, home range size, daily movement patterns, survival, and migration chronology. Home range size (95% minimum convex polygon) for wood ducks averaged 6,820 ± 572 ha (SE) and we did not find evidence for a difference by age, sex, or transmitter type. Daily movement distance in August (2,031 ± 51 m) was similar to daily movement distance in September (1,922 ± 44 m), but daily movement distances for August and September were less than daily movement distance for October (3,509 ± 53 m) and November (3,347 ± 106 m). Wood ducks primarily used wetlands with woody (45.0%) and emergent vegetation (40.4%), and the most commonly used wetland types by wood ducks were impounded wetlands (53.8%), lakes (17.6%), and ponds (10.7%). Model‐derived survival during the postbreeding period was 0.79 (95% CI = 0.74–0.84). Daily survival was positively related to increased river level and had a mean increase of 4.06 ± 0.67% for every 0.3‐m increase in the Illinois River level at low river levels (1.5–3.0 m) and a mean increase of 1.38 ± 0.32% for every 0.3‐m increase in the Illinois River level at high river levels (4.0–5.5 m). Average departure date of wood ducks leaving the Illinois River Valley was 27 October (range =13 August–15 December), and adult male wood ducks left the study area 11–16 days earlier than the other age and sex cohorts (H2 = 11.6, P = 0.01). Providing additional waterfowl sanctuaries that contain wooded wetlands, especially in years of low river levels, may increase survival for wood ducks during the postbreeding period.

Neu5Gc binding loss of subtype H7 influenza A virus facilitates adaptation to gallinaceous poultry following transmission from waterbirds.

Between 2013 and 2018, the novel A/Anhui/1/2013 (AH/13)-lineage H7N9 virus caused at least five waves of outbreaks in humans, totaling 1,567 confirmed human cases in China. Surveillance data indicated a disproportionate distribution of poultry infected with this AH/13-lineage virus, and laboratory experiments demonstrated that this virus can efficiently spread among chickens but not among Pekin ducks. The underlying mechanism of this selective transmission remains unclear. In this study, we demonstrated the absence of Neu5Gc expression in chickens across all respiratory and gastrointestinal tissues. However, Neu5Gc expression varied among different duck species and even within the tissues of the same species. The AH/13-lineage viruses exclusively bind to acetylneuraminic acid (Neu5Ac), in contrast to wild waterbird H7 viruses that bind both Neu5Ac and N-glycolylneuraminic acid (Neu5Gc). The level of Neu5Gc expression influences H7 virus replication and facilitates adaptive mutations in these viruses. In summary, our findings highlight the critical role of Neu5Gc in affecting the host range and interspecies transmission dynamics of H7 viruses among avian species.IMPORTANCEMigratory waterfowl, gulls, and shorebirds are natural reservoirs for influenza A viruses (IAVs) that can occasionally spill over to domestic poultry, and ultimately humans. This study showed wild-type H7 IAVs from waterbirds initially bind to glycan receptors terminated with N-acetylneuraminic acid (Neu5Ac) or N-glycolylneuraminic acid (Neu5Gc). However, after enzootic transmission in chickens, the viruses exclusively bind to Neu5Ac. The absence of Neu5Gc expression in gallinaceous poultry, particularly chickens, exerts selective pressure, shaping IAV populations, and promoting the acquisition of adaptive amino acid substitutions in the hemagglutinin protein. This results in the loss of Neu5Gc binding and an increase in virus transmissibility in gallinaceous poultry, particularly chickens. Consequently, the transmission capability of these poultry-adapted H7 IAVs in wild water birds decreases. Timely intervention, such as stamping out, may help reduce virus adaptation to domestic chicken populations and lower the risk of enzootic outbreaks, including those caused by IAVs exhibiting high pathogenicity.

Demographic History and Inbreeding in Two Declining Sea Duck Species Inferred From Whole-Genome Sequence Data.

Anthropogenic impact has transitioned from threatening already rare species to causing significant declines in once numerous organisms. Long-tailed duck (Clangula hyemalis) and velvet scoter (Melanitta fusca) were once important quarry sea duck species in NW Europe, but recent declines resulted in their reclassification as vulnerable on the IUCN Red List. We sequenced and assembled genomes for both species and resequenced 15 individuals of each. Using analyses based on site frequency spectra and sequential Markovian coalescence, we found C. hyemalis to show more historical demographic stability, whereas M. fusca was affected particularly by the Last (Weichselian) Glaciation. This likely reflects C. hyemalis breeding continuously across the Arctic, with cycles of glaciation primarily shifting breeding areas south or north without major population declines, whereas the more restricted southern range of M. fusca would lead to significant range contraction during glaciations. Both species showed evidence of declines over the past thousands of years, potentially reflecting anthropogenic pressures with the recent decline indicating an accelerated process. Analysis of runs of homozygosity (ROH) showed low but nontrivial inbreeding, with F ROH from 0.012 to 0.063 in C. hyemalis and ranging from 0 to 0.047 in M. fusca. Lengths of ROH suggested that this was due to ongoing background inbreeding rather than recent declines. Overall, despite demographically important declines, this has not yet led to strong inbreeding and genetic erosion, and the most pressing conservation concern may be the risk of density-dependent (Allee) effects. We recommend monitoring of inbreeding using ROH analysis as a cost-efficient method to track future developments to support effective conservation of these species.

The intensity of supplementary feeding in an urban environment impacts overwintering Mallards (Anas platyrhynchos) as wintering conditions get harsher

Although urbanization poses various threats to avifauna, some bird species, including Mallards (Anas platyrhynchos), choose towns and cities as their wintering habitats, possibly due to favourable temperatures and abundant anthropogenic food. In this study, we investigated how population dynamics changed in relation to winter harshness and intensity of supplementary bird feeding in Mallard, a dabbing duck species well adapted to an urban environment. We surveyed 15 city ponds for five consecutive years, counting overwintering individuals and incidents of bird feeding conducted by the citizens of Gdańsk. Number of Mallards observed in the studied area fluctuated both annually and within seasons, with on average 327 (± SD = 108.5) individuals and a male-biased sex ratio reported. We observed a gradient of feeding intensity on the surveyed ponds, with number of feeding incidents ranging from 0 to 30 in a day. The results indicated that the number of Mallards increased with the bird feeding intensity, independently of the size of the studied ponds, and both males and females were similarly attracted by food provisioning. More severe wintering conditions, expressed by the percentage of the ice cover of studied ponds resulted in more birds wintering in the urban area. This effect was more pronounced in females compared to males, possibly due to females having a lower ability to withstand severe wintering conditions, forcing them to relocate towards urban areas. Our results confirm that urbanized areas may serve as wintering grounds for birds, due to additional food resources available there and milder wintering conditions compared to surrounding rural areas.

Body mass changes of dabbling and diving ducks wintering in California

AbstractBird body mass is often used as an index of body condition and fluctuates throughout the year in response to environmental conditions and avian life‐history events. We examined the body mass of 59,572 ducks representing 13 species (7 dabbling duck species and 6 diving duck species) harvested within the 3 regions of the Central Valley in California, USA (Sacramento Valley, Suisun Marsh, San Joaquin Valley). Data collection occurred in winter during 5 hunting seasons (2014–2015, 2015–2016, 2017–2018, 2018–2019, 2019–2020). For all species, age, and sex classes, the body mass of dabbling ducks varied temporally and was lowest at the end of the hunting season in late January, declining from the beginning of the hunting season in mid‐October (northern pintail [Anas acuta]: −11.4% to −20.4%; northern shoveler [Spatula clypeata]: −3.5% to −17.3%; cinnamon teal [Anas cyanoptera]: −5.0% to −17.1%; American wigeon [Mareca americana]: −6.9% to −12.2%; American green‐winged teal [Anas carolinensis]: −5.9% to −11.9%; mallard [Anas platyrhynchos]: −1.8% to −9.6%; gadwall [Mareca strepera]: −2.2% to −8.4%). As expected, adults (after hatch‐year) were heavier than immature (hatch‐year) birds (within males: 0.6–8.6%; within females: 0.1–6.6%) and males were heavier than females (within adults: 3.1–38.6%; within immatures: 5.4–33.5%) at the end of the hunting season in all species. Within dabbling duck species, body masses did not differ among regions at the beginning of the hunting season but were heavier in the Sacramento Valley (0.5–14.4%) than other areas by the end of the hunting season. In contrast, body masses of diving ducks did not vary substantially during the hunting season or among regions. Diving ducks demonstrated inconsistent changes in mass from the beginning to the end of the season (lesser scaup [Aythya affinis]: 3.4% to 12.3%; canvasback [Aythya valisineria]: 5.1% to 6.1%; bufflehead [Bucephala albeola]: −3.2% to 1.6%; ring‐necked duck [Aythya collaris]: −4.9% to 2.6%; common goldeneye [Bucephala clangula]: −3.2% to −2.4%; ruddy duck [Oxyura jamaicensis]: −16.5% to 5.5%). The substantial temporal and spatial differences in dabbling duck body masses suggest that habitat quality (as measured by caloric value of the available food) or quantity may decline during winter and varies regionally within California's Central Valley.

Consistent changes in muscle phenotype and mitochondrial abundance underlie dive performance across multiple lineages of diving ducks.

Diving animals must sustain high muscle activity with finite oxygen (O2) to forage underwater. Studies have shown that some diving mammals exhibit changes in the metabolic phenotype of locomotory muscles compared with non-divers, but the pervasiveness of such changes across diving animals is unclear, particularly among diving birds. Here, we examined whether changes in muscle phenotype and mitochondrial abundance are associated with dive capacity across 17 species of ducks from three distinct evolutionary clades (tribes) in the subfamily Anatinae: the longest diving sea ducks, the mid-tier diving pochards and the non-diving dabblers. In the gastrocnemius (the primary swimming and diving muscle), mitochondrial volume density in both oxidative and glycolytic fiber types was 70% and 30% higher in sea ducks compared with dabblers, respectively. These differences were associated with preferential proliferation of the subsarcolemmal subfraction, the mitochondria adjacent to the cell membrane and nearest to capillaries, relative to the intermyofibrillar subfraction. Capillary density and capillary-to-fiber ratio were positively correlated with mitochondrial volume density, with no variation in the density of oxidative fiber types across tribes. In the pectoralis, sea ducks had greater abundance of oxidative fiber types than dabblers, whereas pochards were intermediate between the two. These data suggest that skeletal muscles of sea ducks have a heightened capacity for aerobic metabolism and an enhanced ability to utilize O2 stores in the blood and muscle while diving.

The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes).

We present genome sequences of 29 species of ducks from 8 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

Comparative Analysis of Morphometric, Densitometric, and Mechanical Properties of Skeletal Locomotor Elements in Three Duck Species (Anatidae: Anatinae).

Ducks (Anatinae) play a crucial role in wetland ecosystems, contributing to seed dispersal and nutrient cycling. This study investigates the skeletal adaptations of three duck species: the Mallard (Anas platyrhynchos), Tufted Duck (Aythya fuligula), and Green-Winged Teal (Anas crecca). The focus is on the tibiotarsus and humerus bones to understand how these adaptations support their different locomotion and habitat preferences. Bone samples n = 6 of deceased ducks (both male and female) from each species (for a total of 36 samples) were cleaned and measured for length, weight, and density. Dual-energy X-ray absorptiometry was used to determine bone mineral density (BMD) and bone mineral content (BMC), and mechanical properties like yield force and stiffness were tested using a 3-point bending test. The results show significant differences in body weight, bone weight, and bone length among the species, with Mallards being the largest and Teals the smallest. Male Teals displayed higher relative bone weight (RBW) in their tibia compared to male Mallards, and male Mallards had significantly lower RBW in the humerus compared to the other species. Female Teals had higher RBW than the other species. Teals also exhibited much lower BMD in the tibia, whereas female Mallards had lower BMD in the humerus. The Seedor index revealed that male Mallards had the highest values in the tibia, while female Teals had the lowest. Mechanical testing indicated that Teals had lower yield force and breaking force in the tibia, whereas Mallards showed the highest stiffness in both bones. Tufted Ducks had intermediate values, consistent with their diving behaviour. These findings suggest that the Mallard's robust bones support its adaptability to various environments and diverse locomotion and foraging strategies. The Teal's lighter and less dense bones facilitate rapid flight and agility in shallow wetlands. The Tufted Duck's intermediate bone characteristics reflect its specialization in diving, requiring a balance of strength and flexibility. Understanding these skeletal differences may provide valuable insights into the evolutionary biology and biomechanics of these species, aiding in their conservation and enhancing our knowledge of their roles in wetland ecosystems. By exploring the functional morphology of these ducks, this study aims to shed light on the biomechanical mechanisms that underpin their locomotion and foraging behaviours.

On the wing: Morphological variation in the osteology of Mediterranean, Near Eastern, and EuropeanAnatidae (excluding Anserinae).

Accurate identification of waterfowl bones in archaeological and fossil assemblages has potential to unlock new methods of past environmental reconstruction, as species have differing habitat preferences and migration patterns. Therefore, identifying the presence of avian species with different ecological niches is key to determining past environments and ultimately how prehistoric people responded to climatic and environmental realignments. However, the identification of osteological remains of waterbirds such as ducks to species level is notoriously challenging. We address this by presenting a new two-dimensional geometric morphometric protocol on wing elements from over 20 duck species and test the utility of these shape data for correct species identification. This is an ideal starting point to expand utilization of these types of approaches in avifaunal research and test applicability to an extremely difficult taxonomic group.

H19 influenza A virus exhibits species-specific MHC class II receptor usage

Avian influenza A virus (IAV) surveillance in Northern California, USA, revealed unique IAV hemagglutinin (HA) genome sequences in cloacal swabs from lesser scaups. We found two closely related HA sequences in the same duck species in 2010 and 2013. Phylogenetic analyses suggest that both sequences belong to the recently discovered H19 subtype, which thus far has remained uncharacterized. We demonstrate that H19 does not bind the canonical IAV receptor sialic acid (Sia). Instead, H19 binds to the major histocompatibility complex class II (MHC class II), which facilitates viral entry. Unlike the broad MHC class II specificity of H17 and H18 from bat IAV, H19 exhibits a species-specific MHC class II usage that suggests a limited host range and zoonotic potential. Using cell lines overexpressing MHC class II, we rescued recombinant H19 IAV. We solved the H19 crystal structure and identified residues within the putative Sia receptor binding site (RBS) that impede Sia-dependent entry.

Long-term changes in autumn-winter harvest distributions vary among duck species, months, and subpopulations.

Our aim was to describe shifts in autumn and winter harvest distributions of three species of dabbling ducks (blue-winged teal [Spatula discors], mallard [Anas platyrhynchos], and northern pintail [Anas acuta]) in the Central and Mississippi flyways of North America during 1960-2019. We measured shifts in band recovery distributions corrected for changes in hunting season dates and zones by using kernel density estimators to calculate 10 distributional metrics. We then assessed interannual and intraspecific variation by comparing species-specific changes in distributional metrics for 4 months (October-January) and three geographically based subpopulations. During 1960-2019, band recovery distributions shifted west- and southwards (blue-winged teal) or east- and northwards (mallard and northern pintail) by one hundred to several hundred kilometers. For all three species, the broad (95% isopleth) and core distributions (50% isopleth) showed widespread decreases in overlap and increases in relative area compared to a 1960-1979 baseline period. Shifts in band recovery distributions varied by month, with southward shifts for blue-winged teal most pronounced in October and northward shifts for mallard and northern pintail greatest during December and January. Finally, distributional metric response varied considerably among mallard subpopulations, including 2-4-fold differences in longitude, latitude, and overlap, whereas differences among subpopulations were minimal for blue-winged teal and northern pintail. Our findings support the popular notion that winter (December-January) distributions of duck species have shifted north; however, the extent and direction of distributional changes vary among species and subpopulations. Long-term distributional changes are therefore complex and summarizing shifts across species, months, or subpopulations could mask underlying finer-scale patterns that are important to habitat conservation and population management. A detailed understanding of how species distributions have changed over time will help quantify important drivers of species occurrence, identify habitat management options, and could inform decisions on where to focus conservation or restoration efforts.

Viral pathogen detection in U.S. game-farm mallard (Anas platyrhynchos) flags spillover risk to wild birds.

The threat posed by emerging infectious diseases is a major concern for global public health, animal health and food security, and the role of birds in transmission is increasingly under scrutiny. Each year, millions of mass-reared game-farm birds are released into the wild, presenting a unique and a poorly understood risk to wild and susceptible bird populations, and to human health. In particular, the shedding of enteric pathogens through excrement into bodies of water at shared migratory stop-over sites, and breeding and wintering grounds, could facilitate multi-species long-distance pathogen dispersal and infection of high numbers of naive endemic birds annually. The Mallard (Anas platyrhynchos) is the most abundant of all duck species, migratory across much of its range, and an important game species for pen-rearing and release. Major recent population declines along the US Atlantic coast has been attributed to game-farm and wild mallard interbreeding and the introduction maladaptive traits into wild populations. However, pathogen transmission and zoonosis among game-farms Mallard may also impact these populations, as well as wildlife and human health. Here, we screened 16 game-farm Mallard from Wisconsin, United States, for enteric viral pathogens using metatranscriptomic data. Four families of viral pathogens were identified - Picobirnaviridae (Genogroup I), Caliciviridae (Duck Nacovirus), Picornaviridae (Duck Aalivirus) and Sedoreoviridae (Duck Rotavirus G). To our knowledge, this is the first report of Aalivirus in the Americas, and the first report of Calicivirus outside domestic chicken and turkey flocks in the United States. Our findings highlight the risk of viral pathogen spillover from peri-domestically reared game birds to naive wild bird populations.

Human-Induced Range Expansions Result in a Recent Hybrid Zone between Sister Species of Ducks.

Landscapes are consistently under pressure from human-induced ecological change, often resulting in shifting species distributions. For some species, changing the geographical breadth of their niche space results in matching range shifts to regions other than those in which they are formally found. In this study, we employ a population genomics approach to assess potential conservation issues arising from purported range expansions into the south Texas Brush Country of two sister species of ducks: mottled (Anas fulvigula) and Mexican (Anas diazi) ducks. Specifically, despite being non-migratory, both species are increasingly being recorded outside their formal ranges, with the northeastward and westward expansions of Mexican and mottled ducks, respectively, perhaps resulting in secondary contact today. We assessed genetic ancestry using thousands of autosomal loci across the ranges of both species, as well as sampled Mexican- and mottled-like ducks from across overlapping regions of south Texas. First, we confirm that both species are indeed expanding their ranges, with genetically pure Western Gulf Coast mottled ducks confirmed as far west as La Salle county, Texas, while Mexican ducks recorded across Texas counties near the USA-Mexico border. Importantly, the first confirmed Mexican × mottled duck hybrids were found in between these regions, which likely represents a recently established contact zone that is, on average, ~100 km wide. We posit that climate- and land use-associated changes, including coastal habitat degradation coupled with increases in artificial habitats in the interior regions of Texas, are facilitating these range expansions. Consequently, continued monitoring of this recent contact event can serve to understand species' responses in the Anthropocene, but it can also be used to revise operational survey areas for mottled ducks.

Genetic diversity and phylogeographic dynamics of avihepadnavirus: a comprehensive full-length genomic view.

Avihepadnavirus is a genus of the Hepadnaviridae family. It primarily infects birds, including species of duck, geese, cranes, storks, and herons etc. To understand the genetic relatedness and evolutionary diversity among avihepadnavirus strains, a comprehensive analysis of the available 136 full-length viral genomes (n = 136) was conducted. The genomes were classified into two major genotypes, i.e., GI and GII. GI viruses were further classified into 8 sub-genotypes including DHBV-I (duck hepatitis B virus-I), DHBV-II (Snow goose Hepatitis B, SGHBV), DHBV-III, RGHBV (rossgoose hepatitis B virus), CHBV (crane hepatitis B virus), THBV (Tinamou hepatitis B virus), STHBV (stork hepatitis B virus), and HHBV (Heron hepatitis B virus). DHBV-I contains two sub-clades DHBV-Ia and DHBV-Ib. Parrot hepatitis B virus (PHBV) stains fall into GII which appeared as a separate phylogenetic branch/clade. All the subtypes of viruses in GI and GII seem to be genetically connected with viruses of DHBV-I by multiple mutational steps in phylogeographic analysis. Furthermore, 16 potential recombination events among different sub-genotypes in GI and one in GII were identified, but none of which is inter-genotypic between GI and GII. Overall, the results provide a whole picture of the genetic relatedness of avihepadnavirus strains, which may assist in the surveillance of virus spreading.

Demographic and conservation genomic assessment of the threatened marbled teal (Marmaronetta angustirostris).

Genetic assessment of species that have experienced dramatic population declines provides critical information that is instrumental for the design of conservation recovery programs. Here, we use different sources of molecular data (mtDNA and ddRAD-seq) to evaluate the genetic status of wild and captive populations of marbled teal (Marmaronetta angustirostris), a duck species classified as critically endangered in Spain and near threatened at a global scale. First, we determined the evolutionary and demographic trajectories of the wild population from Spain and the currently much larger population from Iraq, which is also the documented source of European zoo stocks. Second, we evaluated the suitability of the different captive populations for ongoing restocking programs in Spain and assessed their potential impact on the genetic composition of wild populations. Populations from Spain and Iraq were assigned to distinct genetic clusters, albeit with an overall low level of genetic differentiation, in line with their recent divergence (<8000 years ago) and lack of phylogeographic structure in the species. Demogenomic inferences revealed that the two populations have experienced parallel demographic trajectories, with a marked bottleneck during the last glacial period followed by a sudden demographic expansion and stability since the onset of the Holocene. The wild population from Spain presented high levels of inbreeding, but we found no evidence of recent genetic bottlenecks compatible with the human-driven decline of the species during the past century. The captive populations from the two Spanish centers involved in restocking programs showed genetic introgression from European zoos; however, we found limited evidence of introgression from the zoo genetic stock into the wild population from Spain, suggesting captive-bred birds have limited breeding success in the wild. Our study illustrates how ex situ conservation programs should consider the genetic distinctiveness of populations when establishing breeding stocks and highlights the importance of genetically assessing captive populations prior to reinforcement actions.