The electronic navigational charts are crucial carriers for representing the multi-source heterogeneous data of Waterborne Traffic Elements (WTEs). However, their layer-based modelling method has some shortcomings in expressing the multi-granularity features, complex relationships, and dynamic evolution of elements. This paper proposes an objectification modelling method for WTEs based on the concept of multi-granularity spatiotemporal object modelling. A classification system for waterborne traffic objects is developed based on the relevance of behavior to elements; combining characteristics of waterborne traffic, a data model for waterborne traffic objects is constructed from eight aspects: spatiotemporal reference, spatiotemporal position, spatial form, basic information, attributes, behavioral ability, structure, and associative relationships. An object extraction function is also established, extracting object attributes and relationships between objects according to different element classes. Taking the Jiashan section of the Hangzhou-Shanghai Line in Zhejiang Province as the experimental subject, the multi-granularity spatiotemporal characteristics, dynamic evolution, and relationship expression of channel class objects are tested. The experimental results show that the proposed method provides the theoretical basis and data organization mode for the multi-granularity expression of WTEs.