Abstract. The Southern Ocean plays a central role in Earth's climate, ecology, and biogeochemical cycles. Therefore, understanding long-term changes in Southern Ocean water masses in the geologic past is essential for assessing the role of the Southern Ocean in the climate system. Radiolarian fossils are a useful tool to reconstruct the water masses of the Southern Ocean. However, the radiolarian assemblages in the high latitudes of the Southern Ocean (south of the polar front (PF)) are still poorly understood. In this paper, we report the radiolarian assemblages in surface marine sediment and plankton tow samples collected from the high latitudes south of the PF. In the surface sediments, four factors (named F1–F4) of the radiolarian assemblages were identified using Q-mode factor analysis, which are related to different water masses and hydrological conditions. F1 is related to the surface waters south of the southern boundary (SB) of the Antarctic Circumpolar Current (ACC), which are cooled by melting sea ice and ice sheets. F2 is associated with water masses north of the SB. A comparison with the vertical distribution of the radiolarian assemblages in plankton tow samples indicates that characteristic species are associated with the Circumpolar Deep Water (CDW) and surface waters north of the SB. F3 is associated with modified Circumpolar Deep Water (mCDW). The radiolarian assemblage of F4 does not seem specifically related to any of the water mass here analyzed. However, the species in this assemblage are typically dwells within ice shelf and/or sea ice edge environments. Radiolarian assemblages here identified and associated with water masses, and ice edge environments are useful to reconstruct the environment south of the PF in the geologic past.