Arctocephalus Australis Research Articles

Host genetic diversity and body condition influence parasite resistance and clearance in a wild marine mammal population.

Host genetic variability can modulate infection resistance, although its role in infection clearance remains unclear. Hookworm disease (Uncinaria sp.) is the leading cause of pup mortality in several otariid species, although the parasite can be cleared through immune-mediated processes. We evaluated the association of host genetic diversity, body condition and immune response with hookworm resistance and/or clearance in the South American fur seal (Arctocephalus australis). Uninfected pups had higher heterozygosity than parasitized individuals, indicating a negative relationship between heterozygosity and the chances of infection. Likewise, pups that died of hookworm infection had lower heterozygosity than those that died of non-infectious causes. Interestingly, once infected, pups that survived hookworm infection had heterozygosities similar to pups that died of hookworm disease. However, pups that cleared the infection had a higher body mass and parasite-specific immunoglobulin G levels than those that did not recover or died of hookworm disease. Thus, although heterozygosity predicted resistance to and mortality from hookworm infections, it did not affect parasite clearance, which was facilitated by better body condition and adaptive immune responses. This demonstrates that host genetic variability and host-environment interactions influence disease dynamics, acting at different, well-defined stages of infection.

Unveiling mercury levels: Trophic habits influence on bioaccumulation in two Otariid species

Mercury, a toxic metal released by various human activities, exerts environmental stress through its bioaccumulation and biomagnification, particularly in marine habitats. South American fur seals (Arctocephalus australis) and sea lions (Otaria flavescens) reproduce on the Atlantic coast of Uruguay. As top predators, they can accumulate toxic levels of mercury and are often used as sentinel species for monitoring ecosystem health. Fur seals prey on pelagic species, such as fish and squid, while sea lions consume coastal-benthic prey. We analyzed the total mercury concentration (THg) in hair and the trophic habits (δ13C and δ15N) of females from both species. The average THg concentration in adult female sea lions (30.5 ± 9.3 μg/g dry weight) was significantly higher than in fur seals (6.3 ± 2.5 μg/g dry weight). Additionally, the mean δ15N and δ13C values were significantly higher in sea lion (δ15N: 19.2 ± 0.6‰, δ13C: −13.8 ± 0.2‰) compared to fur seals (δ15N: 16.5 ± 0.5‰, δ13C: −15.5 ± 0.6‰). Our results suggest that different trophic levels and feedings areas affect the THg concentration in Uruguayan Otariids. Notably, at the intraspecific level, the THg concentration in sea lions increased with δ13C values, suggesting a link to coastal feeding habits. This indicates that coastal feeding behaviors, compared to feeding in pelagic environments, enhance mercury bioaccumulation in Otariids along the Uruguayan coast, with the discharge of freshwater from the Río de la Plata (one of the largest estuaries in South America) basin identified as a potential mercury source. THg concentrations found in female sea lion hair are the highest reported in Otariids globally. Mercury levels exceeded toxic thresholds observed in other mammals and could pose significant health risks. Our findings may explain why sea lions were particularly affected by the avian influenza outbreak in Uruguay compared to fur seals. Monitoring the declining sea lion population is crucial, making our results significant for integrated conservation and management strategies.

Coastal connectivity of marine predators over the Patagonian Shelf during the highly pathogenic avian influenza outbreak

Animal movement and population connectivity are key areas of uncertainty in efforts to understand and predict the spread of infectious disease. The emergence of highly pathogenic avian influenza (HPAI) in South America poses a significant threat to globally significant populations of colonial breeding marine predators in the South Atlantic. Yet, there is a poor understanding of which species or migratory pathways may facilitate disease spread. Compiling one of the largest available animal tracking datasets in the South Atlantic, we examine connectivity and inter‐population mixing for colonial breeding marine predators tagged at the Falkland Islands. We reveal extensive connectivity for three regionally dominant and gregarious species over the Patagonian Shelf. Black‐browed albatrosses (BBA), South American fur seals (SAFS) and Magellanic penguins (MAG) used coastal waters along the Atlantic coast of South America (Argentina and Uruguay). These behaviours were recorded at or in close proximity to breeding colonies and haul‐out areas with dense aggregations of marine predators. Transit times to and from the Falkland Islands to the continental coast ranged from 0.2–70 days, with 84% of animals making this transit within 4 days ‐ a conservative estimate for HPAI infectious period. Our findings demonstrate BBA, SAFS and MAG connectivity between the Falkland Islands and mainland South America over an expansive spatial network and numerous pathways, which has implications for infectious disease persistence, transmission and spread. This information is vital in supporting HPAI disease surveillance, risk assessment and marine management efforts across the region.

Post-mortem detection of hemoplasmas (hemotropic Mycoplasma spp.) in South American fur seal (Arctocephalus australis) sampled in Rio Grande do Sul State, southern Brazil

Hemotropic mycoplasmas are bacteria that attaches to erythrocytes surface, which some species presents zoonotic concerns. In the suborder Pinnipedia, genera Otaria and Arctocephalus are prominent in Brazil. This study investigated the occurrence of hemoplasmas in Arctocephalus sp. and Otaria flavescens found dead along the coast of a Southern Brazilian State. DNA from 135 spleen samples were extracted and subjected to conventional PCR protocols, targeting the 16 S rRNA and 23 S rRNA gene. Three (2.22 %) Arctocephalus australis were positive in the 16 S rRNA gene, and no samples amplified in the 23 S rRNA gene. Samples from this study clustered with Zalophus californianus and Arctocephalus tropicalis mycoplasmas on a Bayesian phylogenetic analysis. Genetic diversity analysis suggested distinct genotypes, indicating A. australis as a new host for hemoplasma, and also a potential putative novel hemoplasma genotype. These findings raises future awareness for pinnipeds conservation, and adds Mycoplasma spp. to be taken into consideration when clinically evaluating rescued animals.

Highly pathogenic avian influenza H5N1 virus infections in pinnipeds and seabirds in Uruguay: Implications for bird-mammal transmission in South America.

The highly pathogenic avian influenza viruses of clade 2.3.4.4b have caused unprecedented deaths in South American wild birds, poultry, and marine mammals. In September 2023, pinnipeds and seabirds appeared dead on the Uruguayan Atlantic coast. Sixteen influenza virus strains were characterized by real-time reverse transcription PCR and genome sequencing in samples from sea lions (Otaria flavescens), fur seals (Arctocephalus australis), and terns (Sterna hirundinacea). Phylogenetic and ancestral reconstruction analysis showed that these strains have pinnipeds most likely as the ancestral host, representing a recent introduction of clade 2.3.4.4b in Uruguay. The Uruguayan and closely related strains from Peru (sea lions) and Chile (sea lions and a human case) carry mammalian adaptative residues 591K and 701N in the viral polymerase basic protein 2 (PB2). Our findings suggest that clade 2.3.4.4b strains in South America may have spread from mammals to mammals and seabirds, revealing a new transmission route.

Historical ecology of pinnipeds of the northern coast of the San Jorge Gulf (central Patagonia, Argentina) since the Late-Holocene

The northern coast of the San Jorge Gulf, Atlantic Patagonia, is recognised as a marine biodiversity hot spot and is designated as a priority conservation area. Among marine mammals, three species of pinnipeds inhabit the region. While South American sea lions ( Otaria flavescens) have a higher abundance and a larger number of colonies than South American fur seals ( Arctocephalus australis), a few individuals of the Southern elephant seal ( Mirounga leonina) reside in the region. Nevertheless, little is known about the abundance and distribution of these pinnipeds before the 18th century, when various extractive activities became widespread, including the unregulated exploitation of furs and oil. This study aims to examine whether the distribution and relative abundance of ancient pinnipeds differ from present-day populations. To achieve this, we conducted inter-specific identification of pinniped bone remains coming from archaeological assemblages dated from 6000 to 600 14C years BP and reviewed historical sources to contrast these retrospective data with modern ecological literature. The results suggest changes over time in the relative abundances of species within the pinniped community. The relative abundance of fur seals was greater than or equal to that of sea lions in most Late-Holocene pinniped assemblages. Additionally, fur seals have been recorded in historical and Late-Holocene periods in places where they are currently very rare. These findings are consistent with the higher relative abundance of fur seals recorded in other archaeological sites along the Patagonian coast, suggesting that modern distribution and abundance have been heavily affected by commercial hunting. This study contributes to a better understanding of the nature and magnitude of the anthropic impact on the marine ecosystem of the northern coast of the San Jorge Gulf. It also provides historical baseline information to strengthen conservation policies and restoration efforts.

A reconstruction of the marine mammal harvest by the Real Compañía Marítima through the analysis of historical sources (AD 1790–1804)

Humans have altered marine ecosystems over very long-time scales and historical data is often needed to understand the true magnitude of human impacts. The Southwest Atlantic Ocean has a long history of large-scale removal of marine vertebrates due to whaling, sealing, and fishing in the past three centuries. Historical catch records are crucial in assessing the conservation status of these historically over-exploited populations and setting suitable recovery goals. However, several gaps in the history of exploitation of many populations limit our ability to judge recoveries success. This study examines the history of the Spanish fishing company, the Real Compañía Marítima (Royal Maritime Company), and reconstructs its catches of marine mammals in Patagonia and on the north coast of the Río de la Plata. The analysis of a wide range of historical sources reveals that, between the years 1790 and 1804, the Company extracted less than 100 southern right whales Eubalaena australis, some 200,000 South American fur seals Arctocephalus australis and South American sea lions Otaria flavescens, and a few southern elephant seals Mirounga leonina. Although the Company’s whale catch is negligible compared to that of other nations in the same whaling grounds, the amount of fur seals and sea lions removed from the ecosystem deserves attention. This historical survey provides us with the first estimate of the catches made by the Real Compañía Marítima. However, these figures only represent a small part of the extractive activities that took place in the region and further research is encouraged to assess the true dimension of human impacts on Southwest Atlantic ecosystems. The incorporation of retrospective data into ecological studies can be laborious and may have inherent biases, but it also provides valuable information for comprehending modern ecosystems and formulating appropriate conservation plans.

Persistent organic pollutants and polycyclic aromatic hydrocarbons in livers of stranded Arctocephalus australis in southern Brazilian beaches

23 livers of South American fur seal (Arctocephalus australis) found stranded in southern Brazilian beaches were evaluated for Persistent Organic Pollutants (POPs) and Polycyclic Aromatic Hydrocarbons (PAHs). POPs (DDTs, mirex, eldrin, dieldrin, aldrin, isodrin, HCHs, chlordanes and PCBs) and PAHs in livers were Soxhlet extracted, analyzed and quantified using Gas Chromatography Tandem Mass Spectrometry (GC-TQMS). The main POPs found were PCBs and DDTs, totaling 81 %. Among pesticides, mirex followed DDTs, possibly due to usage in Uruguay, followed by Σdrins, ΣCHLs and ΣHCHs. Naphthalene was the major PAH found, while heavier compounds did not significantly bioaccumulate. Concentrations of POPs resembled previous findings for A. australis. Considering only juveniles, no POPs showed significant differences between sexes. Lipidic content, weight and length did not show any correlation with POP concentration. This was the first record of PAHs and PBDEs in South American fur seals, and the levels of these pollutants were relatively low.

Concentrations of lead in pinniped bones confirm Galapagos as a relatively unpolluted environment

Lead (Pb) is a trace element that is naturally present in arid regions but it is also released to the marine environment by anthropogenic industrial emissions. Here, we assessed Pb concentrations in bone samples of four pinniped species: the Galapagos sea lion Zalophus wollebaeki, sampled in Galapagos archipelago, the monk seal Monachus monachus from Mauritania, and the South American fur seal Arctocephalus australis and the South American sea lion Otaria flavescens, from Uruguay, and investigate potential geographic differences. Concentrations of lead in the samples from Galapagos were lower than those detected in samples from Mauritania and Uruguay, indicating that the Galapagos archipelago is a comparatively pristine spot for this toxic element as related to the other two areas. The waters of Mauritania and Uruguay are likely affected by the inputs of lead brought by the desert dust and released by the local industry, respectively. This study supports the use of bone to assess lead concentrations in biota, as well as the use of pinnipeds as bioindicators of marine pollution.

Otariid gammaherpesvirus 1 in South American fur seals (Arctocephalus australis) and a novel related herpesvirus in free-ranging South American sea lions (Otaria byronia): Prevalence and effects of age, sex, and sample type.

Otariid gammaherpesvirus 1 (OtGHV1) is associated with high rates of urogenital carcinoma in free-ranging California sea lions (Zalophus californianus; CSL), and until recently was reported only in the Northern Hemisphere. The objective of this study was to survey free-ranging South American sea lions (Otaria byronia; SASL) and South American fur seals (Arctocephalus australis: SAFS) in Punta San Juan, Peru for OtGHV1 and to determine prevalence characteristics. Twenty-one percent (14/67) of urogenital swabs collected over three years (2011, 2014, 2015) from live pinnipeds of both species tested positive with a pan-herpesvirus conventional PCR. Sequencing of SAFS amplicons revealed 100% homology to OtGHV1 at the DNA polymerase, glycoprotein B, and viral bcl2-like genes. Sequencing of SASL amplicons revealed a novel related virus, herein called Otariid gammaherpesvirus 8 (OtGHV8). For comparison of sample sites, urogenital, conjunctival, and oropharyngeal swabs collected from 136 live pinnipeds of both species at Punta San Juan between 2011-2018 were then assayed using quantitative PCR for a segment of the OtGHV1/8 DNA polymerase gene using a qPCR assay now determined to cross-react between the two viruses. In total, across both species, 38.6% (51/132) of urogenital swabs, 5.6% (4/71) of conjunctival swabs, and 1.1% (1/90) of oropharyngeal swabs were positive for OtGHV1/8, with SASL only positive on urogenital swabs. Results from SASL were complicated by the finding of OtGHV8, necessitating further study to determine prevalence of OtGHV1 versus OtGHV8 using an alternate assay. Results from SAFS suggest a potential relationship between OtGHV1 in SAFS and CSL. Though necropsy surveillance in SAFS is very limited, geographic patterns of OtGHV1-associated urogenital carcinoma in CSL and the tendency of herpesviruses to cause more detrimental disease in aberrant hosts suggests that it is possible that SAFS may be the definitive host of OtGHV1, which gives further insight into the diversity and phyogeography of this clade of related gammaherpesviruses.

Intraguild predation in pinnipeds: Southern sea lions prey upon adult female South American fur seals in the Falkland Islands

Intraguild predation in pinnipeds: Southern sea lions prey upon adult female South American fur seals in the Falkland Islands

Late Holocene seasonal human predation of otariids in Santa Cruz River mouth, Southern Patagonia, Argentina

According to archaeological data, Otaria flavescens and Arctocephalus australis were exploited at the mouth of the Santa Cruz River by hunter-gatherers in the late Holocene. These studies suggest the past existence of reproductive colonies from where individuals of different ages were taken, highlighting the offspring available in the austral summer. This paper presents new information on sex, age, and season of death based on the study of teeth growth layers and rings recorded on canines of both species recovered in three archaeological sites located in Punta Entrada, on the southern bank of Santa Cruz River. The results confirm that otariids were captured in the austral summer and show that winter and spring were also important seasons. Prey included females, pups, and adult males captured according to the abundance of each age group at different seasons of the year. These data are in agreement with those obtained from other lines of evidence, such as osteometry and sclerochronology, which indicate this sector of the Patagonian coast was occupied recurrently to hunt otariids as one of the main resources taken by hunter-gatherers when visiting Punta Entrada at different times of the year.

Spatial overlap between South American fur seal foraging effort and commercial trawl fisheries in the Falkland Islands

Spatial overlap between South American fur seal foraging effort and commercial trawl fisheries in the Falkland Islands

Assessing of the use of proteins A, G, and chimeric protein AG to detect marine mammal immunoglobulins.

In recent years, there has been an increase in infectious diseases in marine mammals, including brucellosis, infections of morbillivirus, herpesvirus, and poxvirus. Several serological diagnostic methods, including enzyme-linked immunosorbent assays, immunofluorescence assays (ELISA), and western blotting, have been used to detect antibodies against pathogens in marine mammals. However, options for commercial secondary antibodies used to detect antibodies in marine mammals are limited; therefore, the use of proteins A, G, or chimeric protein AG may provide a suitable alternative. This study aimed to assess the use of proteins A, G, and chimeric protein AG to detect marine mammal immunoglobulins. Currently, there are no comparative studies on the use of proteins A, G, and chimeric protein AG for the detection of immunoglobulins in marine mammals. In this study, we used ten pinnipeds' species (Baikal seal, California sea lion, harbor seal, northern fur seal, ringed seal, South American fur seal, South American sea lion, spotted seal, Steller sea lion, and walrus) and five cetacean species (beluga whale, bottlenose dolphin, harbor porpoise, killer whale, and Pacific white-sided dolphin) and compare binding ability to proteins A, G, or chimeric protein AG by ELISA. The results revealed that the immunoglobulins from pinniped and cetacean species reacted more strongly to protein A than protein G. In addition, the immunoglobulins of pinnipeds and cetaceans showed a strong binding ability to chimeric protein AG. These results suggest that proteins A, G, and chimeric protein AG would be used to help further develop serological assays.

South American Fur Seals (Arctocephalus australis) Out of Range in Northern Peru

South American Fur Seals (Arctocephalus australis) Out of Range in Northern Peru

Hematology and serum chemistry of female South American fur seals (Arctocephalus australis) from Isla de Lobos , Uruguay

Hematology and serum chemistry of female South American fur seals (Arctocephalus australis) from Isla de Lobos , Uruguay

Feeding habits of South American and sub‐Antarctic fur seals during their nonbreeding season in the southwestern Atlantic Ocean

AbstractStomach contents of South American (Arctocephalus australis) (n = 219) (SAFS) and sub‐Antarctic (A. tropicalis) (n = 37) (SFS) fur seals were opportunistically sampled from 1980 to 2021 to examine their feeding habits and resource partitioning in southern Brazil while in their nonreproductive periods. SAFSs mainly consumed abundant coastal pelagic species, such as Anchoa marinii and Doryteuthis sanpaulensis, resulting in high sexual trophic niche overlap. The frequency of occurrence (%FO) of fish prey, especially the overexploited Micropogonias furnieri, decreased between 1980–1992 and 2007–2021, while squid increased. For SFSs, offshore squids such as Ommastrephes bartramii and Illex argentinus were the most important prey considering both sexes in the long‐term. The interspecific trophic niche overlap was low, but it is likely underestimated since it increased with the inclusion of scat samples from SFSs. This sample‐size effect was also observed in Shannon's diversity index, which was lower for underrepresented SFSs. Marine debris ingestion was detected in both species (SAFS %FO = 2.7; SFS %FO = 8.3), with only flexible plastic material found. This study brings novel information on feeding habits of fur seal species in the extreme south of Brazil, as well as unprecedented information about their ecology during the nonreproductive period.

Habitat use by South American fur seals (Arctocephalus australis) and sea lions (Otaria flavescens) in a marine protected area in southern Brazil

We present an analysis of the influence of relief on habitat use by South American fur seals (Arctocephalus australis) and sea lions (Otaria flavescens) in the Wildlife Refuge of Ilha dos Lobos (WRIL) in southern Brazil. To test the hypothesis that the spatial occupation of WRIL by these two species of South American pinnipeds is related to the higher relief found in the northern region of the island, we generated a digital three-dimensional model of Ilha dos Lobos. This model was based on photogrammetry of 157 aerial images obtained from an unmanned aerial vehicle (UAV) in 2019. Aerial censuses were conducted between 2010 and 2020 using a helicopter and a UAV to assess the abundance of pinnipeds. The effects of altitude and seasonality on species abundances were assessed using Generalized Linear Mixed Models with Negative Binomial error distribution. The results indicated the existence of variation in the relief of the island, with higher areas in the northern region highly correlated with higher densities of both South American pinniped species on the island. The relationship between pinniped density and altimetry was statistically significant, indicating that these animals preferred to use the higher areas of the island when resting. These results suggest the importance of UAV operations and employment for understanding habitat use by fauna in protected areas.

Agreement Study between Total Leukocyte Count Methodologies in South American Sea Lions (Otaria byronia) and Peruvian Fur Seals (Arctocephalus australis).

South American sea lions (Otaria byronia) and Peruvian fur seals (Arctocephalus australis) are sympatric species inhabiting the coastal Peruvian marine ecosystem. Declining abundance has prompted population health monitoring programs, including temporal monitoring of blood parameters. Several methods exist to determine total leukocyte count, yet no studies have evaluated agreement between methods in pinnipeds. We assessed agreement between total leukocyte counts determined by blood film estimate, Leuko-TIC, HemoCue, and UNOPETTE methods by using archival results from pinnipeds at Punta San Juan, Peru. Blood film estimates were prospectively performed, and resulting data were compared with retrospective leukocyte counts obtained from both species between 2009 and 2019 by using the other methodologies. Agreement in hematologic counts between methods was evaluated using Passing-Bablok regression and Bland-Altman plots (α=0.05). In total, 295 individuals (201 A. australis and 94 O. byronia) were included in the analysis. The blood film estimate method resulted in the highest leukocyte values (P<0.0001). Leuko-TIC counts were significantly higher than HemoCue counts (P<0.0001). Constant and proportional error was present in the agreement between the blood film estimate method and the other methods. Given the variation demonstrated between the different methodologies, additional research is needed to further evaluate agreement between these methodologies. The results underscore the importance of maintaining consistency in leukocyte count methodology for monitoring trends in population health over time. Method consistency may be the more important clinical consideration for assessing changes in leucocyte count over time and avoiding apparent changes depending on the methodology used.

Genomic evidence for homoploid hybrid speciation in a marine mammal apex predator

Hybridization is widespread and constitutes an important source of genetic variability and evolution. In animals, its role in generating novel and independent lineages (hybrid speciation) has been strongly debated, with only a few cases supported by genomic data. The South American fur seal (SAfs) Arctocephalus australis is a marine apex predator of Pacific and Atlantic waters, with a disjunct set of populations in Peru and Northern Chile [Peruvian fur seal (Pfs)] with controversial taxonomic status. We demonstrate, using complete genome and reduced representation sequencing, that the Pfs is a genetically distinct species with an admixed genome that originated from hybridization between the SAfs and the Galapagos fur seal (Arctocephalus galapagoensis) ~400,000 years ago. Our results strongly support the origin of Pfs by homoploid hybrid speciation over alternative introgression scenarios. This study highlights the role of hybridization in promoting species-level biodiversity in large vertebrates.