Miniaturization of electronic devices has become the new phase of modern technology. Wearable Thermoelectric Generators (WTEG), being flexible, lightweight, self-sustained, and safe are the only replacement for conventional batteries for mobile applications. Molybdenum Disulfide (MoS2), a graphene akin compound having diverse transport behaviour and low thermal conductivity is one of the most preferable candidates for thermoelectric application. However, limited reports are available on MoS2 for Wearable thermoelectric applications. In this study, we have accomplished successful growth of MoS2 nanostructures on conductive carbon fabric via one step hydrothermal method and the effect of thermal oxidation of MoS2 has been studied at various annealing temperature. The structural and elemental analysis confirms the transformation of MoS2 into MoO3. Annealing creates an MoS2/MoO3 interface thus enhancing the carrier mobility resulting in enhancement of power factor (481 nW.m−1K−2) of the sample annealed at 200 °C (M1) by 1.29 times than that of pristine MoS2. The sample possessing high performance has been employed to fabricate a WTEG and its real time output has been measured. The design and operating conditions of the device is studied and optimized to obtain the output open circuit voltage as high as 6.4 mV. This paves a promising route to fabricate self- powered wearable biomedical devices.