<p><strong>Background:</strong> Soil fertility degradation remains the major biophysical cause of declining <em>per capita</em> crop production on smallholder farmers in Central Kenya highlands. The study was carried out for 3 consecutive seasons in Embu County classified as semi-arid lands in Kenya. <strong>Objectives:</strong> To determine the effect of Soil Water Harvesting (SWH), cropping systems and Integrated Soil Fertility Management technologies on sorghum and cowpea production in Mbeere South Sub-County, Kenya. <strong>Methodology:</strong> The treatments were arranged in a factorial structure with 3 levels of SWH, 2 cropping systems and 6 soil fertility management options laid out in a partially balanced incomplete block design. The SWC was measured after 2 weeks after planting interval stages in the whole season. Data were analyzed by ANOVA and significant means separated using Least Significant Difference (LSD) at 95% Confidence Interval. <strong>Results:</strong> There was a two way interactions effect between SWH*Fertility management options on sorghum grain yields was significant (<em>p</em>=0.0027, <em>p</em>=0.0008 and<em> p</em>=0.0057) during long rains (LR) of 2011 and 2012, and short rains (SR) of 2011, respectively. Additionally, SWH methods significantly affected sorghum grain yields in a similar trend (<em>p</em>=0.002, <em>p</em>=0.0005 and<em> p</em>=0.0003) in their respective seasons. In SR 2011 and LR 2012, soil fertility options also produced significant effects (<em>p</em>=0.0047 and <em>p</em>=0.0024) on cowpea grain yields, respectively. The results further indicated that there were significant higher SWC measurements at initial stages of 2 WAP, 4 WAP and 6 WAP intervals as compared to the late stages of the season. However, sole cropping systems had significantly more SWC measurement than those in intercropping systems in both seasons. <strong>Implications:</strong> Manure added treatments positively affected SWC conservation and this could be as a result of increased soil organic carbon which improved soil fertility. The available SWC played a great role in drought effect mitigation by availing moisture to sorghum and cowpea productivity especially when prolonged dry spells coincide with crop’s sensitive phenological growing stages. <strong>Conclusions:</strong> Water harvesting methods cropping systems and soil fertility management options had positive influence on soil moisture conservation and crop yields production in Central Kenya Highland. </p>