Irrigation with Treated Wastewater (TWW) is a well-known agricultural practice in Palestine. The long-term use of irrigation with TWW, a source of water and nutrients, can affect plant development, soil, and groundwater quality. Consequently, the frequency and the intervals of irrigation events should be adequately scheduled, especially when nutrients (TWW-N) cannot be separated from the water. Achieving good water quality implies its immediate reuse in irrigated agriculture. In contrast, long-term soil and groundwater quality conservation is marked by the complex mechanisms that correlate the soil, water, plant, and atmosphere. Therefore, monitoring and modeling (MMA) are combined to retrieve the soil water and nitrate fluxes and identify a proper irrigation management plan in a case study in Beit Dajan-Palestine, where a schedule adapted to conventional water was applied to a 6-year-old citrus orchard continuously irrigated with TWW. Soil nitrogen concentration and water content data were collected from March to August 2021 to calibrate the Hydrus-1D model under the (1) farmer demand (F) scenario, where irrigation volumes are delivered according to the farmer experience, and to define an optimal irrigation management strategy with TWW according to the (2) model demand (M) scenario, based on the irrigation frequency. The latter respects the allowable thresholds of soil solution electrical conductivity, σe, assuming an average soil salinity profile and estimated leaf nitrogen concentrations tolerance as reference; 2021 was taken as a calibration year to retrieve water and nitrate fluxes for 2019 and 2020. In 2021, the measured soil electrical conductivity, σe, showed no salinity risk with an average value of 1.07 dS m−1 (low salinity < 2 dS m−1) but with a leaf nitrogen deficit. Although an acceptable level of available soil nitrogen was observed (ranging between 10 and 35 mg kg−1, whereas the standard value is 10–40 mg kg−1), critical concentrations were observed in the leaves (below 1%) in scenario (F) compared to scenario (M) (ranging between 1.7 and 1.9%). The latter also showed a decrease in nitrate leaching by 33% compared to the former. Overall, the comparison between the simulated and measured soil variables shows that the 1D-Hydrus model could follow the temporal variation in the monitored data, with some overestimation of the measured data during the simulation period. The simulations demonstrate that by modulating the salt tolerance threshold, the M scenario achieved better results in terms of root water and N uptake despite the stress inevitably experienced by citrus with long-term TWW irrigation. Moreover, the optimum threshold values used to assess the soil quality and citrus response under conventional water irrigation were inadequate for TWW practices. Therefore, MMA could be an alternative strategy to schedule proper TWW irrigation.
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