Abstract. CO2 concentrations of 21 soil profiles were measured in Zhaotong City, Yunnan Province. The varying characteristics of soil profile CO2 concentrations are distinguishable between carbonate and noncarbonate areas. In noncarbonate areas, soil profile CO2 concentrations increase and show significant positive correlations with soil depth. In carbonate areas, however, deep-soil CO2 concentrations decrease and have no significant correlations with soil depth. Soil organic carbon is negatively correlated with soil CO2 concentrations in noncarbonate areas. In carbonate areas, such relationships are not clear. This means that the special geological process in carbonate areas – carbonate corrosion – absorbs part of the deep-soil-profile CO2. Isotope and soil pH data also support such a process. A mathematical model simulating soil profile CO2 concentration was proposed. In noncarbonate areas, the measured and the simulated values are almost equal, while the measured CO2 concentrations of deep soils are less than the simulated in carbonate areas. Such results also indicate the occurrence of carbonate corrosion and the consuming of deep-soil CO2 in carbonate areas. The decreased CO2 concentration was roughly evaluated based on stratigraphic unit and farming activities. Soil pH and the purity of CaCO3 in carbonate bedrock deeply affect the corrosion. The corrosion in carbonate areas decreases deep-soil CO2 greatly (accounting for 5.2 %–66.3 % with average of 36 %) and naturally affects the soil CO2 released into the atmosphere. Knowledge of this process is important for karst carbon cycles and global climate changes and it may be a part of the “missing carbon sink”.