Soil Organic Matter Formation Research Articles

Microbial central carbon metabolism in a tidal freshwater marsh and an upland mixed conifer soil under oxic and anoxic conditions.

The central carbon (C) metabolic network is responsible for most of the production of energy and biosynthesis in microorganisms and is therefore key to a mechanistic understanding of microbial life in soil communities. Many upland soil communities have shown a relatively high C flux through the pentose phosphate (PP) or the Entner-Doudoroff (ED) pathway, thought to be related to oxidative damage control. We tested the hypothesis that the metabolic organization of the central C metabolic network differed between two ecosystems, an anoxic marsh soil and oxic upland soil, and would be affected by altering oxygen concentrations. We expected there to be high PP/ED pathway activity under high oxygen concentrations and in oxic soils and low PP/ED activity in reduced oxygen concentrations and in marsh soil. Although we found high PP/ED activity in the upland soil and low activity in the marsh soil, lowering the oxygen concentration for the upland soil did not reduce the relative PP/ED pathway activity as hypothesized, nor did increasing the oxygen concentration in the marsh soil increase the PP/ED pathway activity. We speculate that the high PP/ED activity in the upland soil, even when exposed to low oxygen concentrations, was related to a high demand for NADPH for biosynthesis, thus reflecting higher microbial growth rates in C-rich soils than in C-poor sediments. Further studies are needed to explain the observed metabolic diversity among soil ecosystems and determine whether it is related to microbial growth rates.IMPORTANCEWe observed that the organization of the central carbon (C) metabolic processes differed between oxic and anoxic soil. However, we also found that the pentose phosphate pathway/Entner-Doudoroff (PP/ED) pathway activity remained high after reducing the oxygen concentration for the upland soil and did not increase in response to an increase in oxygen concentration in the marsh soil. These observations contradicted the hypothesis that oxidative stress is a main driver for high PP/ED activity in soil communities. We suggest that the high PP/ED activity and NADPH production reflect higher anabolic activities and growth rates in the upland soil compared to the anaerobic marsh soil. A greater understanding of the molecular and biochemical processes in soil communities is needed to develop a mechanistic perspective on microbial activities and their relationship to soil C and nutrient cycling. Such an increased mechanistic perspective is ecologically relevant, given that the central carbon metabolic network is intimately tied to the energy metabolism of microbes, the efficiency of new microbial biomass production, and soil organic matter formation.

The Use of Spectroscopic Methods to Study Organic Matter in Virgin and Arable Soils: A Scoping Review

The use of modern spectroscopic methods of analysis, which provide extensive information on the chemical nature of substances, significantly expands our understanding of the molecular composition and properties of soil organic matter (SOM) and its transformation and stabilization processes in various ecosystems and geochemical conditions. The aim of this review is to identify and analyze studies related to the application of nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopy techniques to study the molecular composition and transformation of organic matter in virgin and arable soils. This article is mainly based on three research questions: (1) Which NMR spectroscopy techniques are used to study SOM, and what are their disadvantages and advantages? (2) How is the NMR spectroscopy technique used to study the molecular structure of different pools of SOM? (3) How is ESR spectroscopy used in SOM chemistry, and what are its advantages and limitations? Relevant studies published between 1996 and 2024 were searched in four databases: eLIBRARY, MDPI, ScienceDirect and Springer. We excluded non-English-language articles, review articles, non-peer-reviewed articles and other non-article publications, as well as publications that were not available according to the search protocols. Exclusion criteria for articles were studies that used NMR and EPR techniques to study non-SOM and where these techniques were not the primary methods. Our scoping review found that both solid-state and solution-state NMR spectroscopy are commonly used to study the structure of soil organic matter (SOM). Solution-phase NMR is particularly useful for studying soluble SOM components of a low molecular weight, whereas solid-phase NMR offers advantages such as higher 13C atom concentration for stronger signals and faster analysis time. However, solution-phase NMR has limitations including sample insolubility, potential signal aggregation and reduced sensitivity and resolution. Solid-state NMR is better at detecting non-protonated carbon atoms and identifying heterogeneous regions within structures. EPR spectroscopy, on the other hand, offers significant advantages in experimental biochemistry due to its high sensitivity and ability to provide detailed information about substances containing free radicals (FRs), aiding in the assessment of their reactivity and transformations. Understanding the FR structure in biopolymers can help to study the formation and transformation of SOM. The integration of two- and three-dimensional NMR spectroscopy with other analytical methods, such as chromatography, mass spectrometry, etc., provides a more comprehensive approach to deciphering the complex composition of SOM than one-dimensional techniques alone.

No-tillage farming for two decades increases plant- and microbial-biomolecules in the topsoil rather than soil profile in temperate agroecosystem

The impact of conservation tillage on the composition, stability, and origin (plant- or microbial-derived) of soil organic matter (SOM) within soil profiles remains unclear. In this study, we characterized the impact of different tillage practices on the molecular composition and status of SOM. These tillage practices included conventional tillage (CT) and conservation tillage such as rotary tillage (RT) and no-tillage (NT). Our investigation spanned a two-decade period within a temperate agroecosystem. Soil samples were collected down to a 30 cm profile, and four biomarkers, namely free lipids, lignin phenols, neutral sugars, and amino sugars, in conjunction with 13C NMR techniques were used to quantify SOM characteristics. The results revealed that conservation tillage (especially NT) led to improvements in both the quantity and composition of SOM when compared to CT in the topsoil (0–5 cm), but not in deeper layers (5–30 cm). More precisely, the NT topsoil, as opposed to CT, exhibited enhancements in two categories: (1) an increase in plant-derived compounds such as long-chain lipids (≥ C20) and steroids by 51%, lignin phenols by 106%, and plant-derived neutral sugars by 61%, and (2) an augmentation in microbial-derived biomolecules, which includes microbial-derived neutral sugars by 49% and microbial necromass carbon (MNC) by 94%. Furthermore, NT, relative to CT, increased the contribution of MNC to soil organic carbon in topsoil (up to 64%, mainly fungal necromass). This highlighted the predominant role of microbial-derived biomolecules in SOM formation. Similarly, RT treatments enhanced the microbial-derived neutral sugars by 18%, plant-derived neutral sugars by 14%, and lignin phenols by 43% relative to CT in the topsoil. Collectively, our study suggests that NT practice could be considered an effective strategy for enhancing SOM accumulation and persistence by fostering the accrual of plant- and microbial-derived biomolecules in the topsoil.

Reparameterizing Litter Decomposition Using a Simplified Monte Carlo Method Improves Litter Decay Simulated by a Microbial Model and Alters Bioenergy Soil Carbon Estimates

AbstractLitter decomposition determines soil organic matter (SOM) formation and plant‐available nutrient cycles. Therefore, accurate model representation of litter decomposition is critical to improving soil carbon (C) projections of bioenergy feedstocks. Soil C models that simulate microbial physiology (i.e., microbial models) are new to bioenergy agriculture, and their parameterization is often based on small datasets or manual calibration to reach benchmarks. Here, we reparameterized litter decomposition in a microbial soil C model (CORPSE ‐ Carbon, Organisms, Rhizosphere, and Protection in the Soil Environment) using the continental‐scale Long‐term Inter‐site Decomposition Experiment Team (LIDET) dataset which documents decomposition across a range of litter qualities over a decade. We conducted a simplified Monte Carlo simulation that constrained parameter values to reduce computational costs. The LIDET‐derived parameters improved modeled C and nitrogen (N) remaining, decomposition rates, and litter mean residence times as compared to Baseline parameters. We applied the LIDET litter decomposition parameters to a microbial bioenergy model (Fixation and Uptake of Nitrogen – Bioenergy Carbon, Rhizosphere, Organisms, and Protection) to examine soil C estimates generated by Baseline and LIDET parameters. LIDET parameters increased estimated soil C in bioenergy feedstocks, with even greater increases under elevated plant inputs (i.e., by increasing residue, N fertilization). This was due to the integrated effects of plant litter quantity, quality, and agricultural practices (tillage, fertilization). Collectively, we developed a simple framework for using large‐scale datasets to inform the parameterization of microbial models that impacts projections of soil C for bioenergy feedstocks.

Carbon sequestration in a bamboo plantation: a case study in a Mediterranean area

In the Mediterranean region, despite bamboo being an alien species that can seriously alter plant and animal biocoenosis, the area occupied by bamboo plantations continues to increase, especially for the purpose to sequester carbon (C). However, the C dynamics in the soil–plant system when bamboo is grown outside its native area are poorly understood. Here we investigated the C mitigation potential of the fast-growing Moso bamboo (Phyllostachys edulis) introduced in Italy for climate-change mitigation. We analyzed aboveground (AGB) and belowground (as root/shoot ratio) biomass, litter and soil organic C (SOC) at 0–15- and 15–30-cm depths in a 4-year-old bamboo plantation in comparison with the former annual cropland on which the bamboo was established. To have an idea of the maximum C stored at an ecosystem level, a natural forest adjacent the two sites was also considered. In the plantation, C accumulation as AGB was stimulated, with 14.8 ± 3.1 Mg C ha–1 stored in 3 years; because thinning was done to remove culms from the first year, the mean sequestration rate was 4.9 Mg C ha–1 a–1. The sequestration rates were high but comparable to other fast-growing tree species in Italy (e.g., Pinus nigra). SOC was significantly higher in the bamboo plantation than in the cropland only at the 0–15 cm depth, but SOC stock did not differ. Possibly 4 years were not enough time for a clear increase in SOC, or the high nutrient uptake by bamboos might have depleted the soil nutrients, thus inhibiting the soil organic matter formation by bacteria. In comparison, the natural forest had significantly higher C levels in all the pools. For C dynamics at an ecosystem level, the bamboo plantation on the former annual cropland led to substantial C removal from the atmosphere (about 12 Mg C ha–1 a–1). However, despite the promising C sequestration rates by bamboo, its introduction should be carefully considered due to potential ecological problems caused by this species in overexploited environments such as the Mediterranean area.

Wetlands harbor lactic acid-driven chain elongators.

Wetlands are globally significant carbon cycling hotspots that both sequester large amounts of CO2 as soil carbon as well as emit a third of all CH4 globally. Their outsized role in the global carbon cycle makes it critical to understand microbial processes contributing to carbon breakdown and storage in these ecosystems. Here, we confirm the presence of chain-elongating organisms in freshwater wetland soils. These organisms take small carbon compounds formed during the breakdown of biomass and turn them into larger compounds (six to eight carbon organic acids) that may potentially contribute to the formation of soil organic matter and long-term carbon storage. Moreover, we find that these chain-elongating organisms may be widely distributed in wetlands globally. Future work should identify these organisms' contribution to carbon cycling in wetlands and the potential role of the products they form in carbon sequestration in wetlands.

The ability of soils to aggregate, more than the state of aggregation, promotes protected soil organic matter formation

Efforts to increase soil organic carbon (SOC) are pursued as a viable climate change mitigation strategy. Boosting SOC stocks requires increasing plant carbon (C) inputs and promoting their persistence in SOC. In well aerated mineral soils, water soluble inputs are expected to stabilize through chemical binding to minerals, forming mineral-associated organic carbon (MAOC) before or after microbial transformation, while structural inputs are expected to stabilize as particulate organic carbon (POC) via protection in soil aggregates. Although ample research is centered on the effects of soil aggregation, its disturbance (e.g., tillage), and microbial processing on SOC cycling, we still lack mechanistic understanding of how plant C input type (i.e., soluble versus structural) and disturbance (i.e., aggregate disruption) independently and in interaction affect POC and MAOC formation and stabilization in soils with inherently different degrees of aggregation.To this end, using 13C enriched structural and soluble plant inputs, we traced SOC formation and stabilization in a lab incubation experiment in soils with differing levels of aggregation, and capacity to form aggregates after disturbance. Our results showed that soluble plant inputs contributed substantially to MAOC and that higher formation and persistence of MAOC occurred in the highly aggregated soil. Moreover, the highly aggregated soil retained more soluble inputs stabilized as MAOC when disturbed. Disturbance in this fine textured, organic carbon rich soil stimulated regeneration of aggregates around structural plant inputs leading to greater persistence of aggregate-occluded POC. Soluble plant inputs, specifically, as well as structural plant inputs in the highly aggregated disturbed soil, compensated for SOC lost due to disturbance alone.Overall, this study provides mechanistic evidence suggesting that management strategies for SOC accrual should consider soil type, aggregation potential, and plant attributes to inform decisions surrounding tillage frequency and cropping regimes. Our mechanistic findings require testing. If confirmed in the field, they would suggest that no disturbance in tandem with high structural plant C inputs would benefit most SOC accrual in systems with soils that have little capacity to form organo-mineral complexes, including large aggregates. On the contrary, with sustained plant inputs, occasional disturbance in systems with soils that have a high capacity to form organo-mineral complexes can promote both POC and MAOC formation and stabilization.

Soil carbon determination for long‐term monitoring revisited using thermo‐gravimetric analysis

AbstractSoils and the vadose zone are the major terrestrial repository of carbon (C) in the form of soil organic matter (SOM), more resistant black carbon (BC), and inorganic carbonate. Differentiating between these pools is important for assessing vulnerability to degradation and changes in the C cycle affecting soil health and climate regulation. Major monitoring programs from field to continent are now being undertaken to track changes in soil carbon (SC). Inexpensive, robust measures that can differentiate small changes in the C pools in a single measurement are highly desirable for long‐term monitoring. In this study, we assess the accuracy and precision of thermo‐gravimetric analysis (TGA) using organic matter standards, clay minerals, and soils from a national data set. We investigate the use of TGA to routinely differentiate between C pools, something no single measurement has yet achieved. Based on the kinetic nature of thermal oxidation of SC combined with the different thermodynamic stabilities of the molecules, we designed a new method to quantify the inorganic and organic SC and further separate the organic biogeochemically active SOM (as loss on ignition, LOI) from the resistant BC in soils. We analyze the TGA spectrums of a national soil monitoring data set (n = 456) and measure total carbon (TC) using thermal oxidation and also demonstrate a TC/LOI relationship of 0.55 for soils ranging from mineral soils to peat for the United Kingdom consistent with previous monitoring campaigns.

Quantifying apparent and real priming effects based on inverse labelling

Organic inputs to soils can accelerate soil organic matter (SOM) decomposition via so-called priming effects, but at the same time microbial biomass turnover can be accelerated – that will be termed as apparent priming effect. However, only a few studies have been set up to quantify the contribution of extra CO2 production from apparent priming. Here, we labeled the microbial biomass by 14C-glucose in pre-incubation and then added labile carbon (C; 12C or 14C glucose) and nitrogen (N; NH4+) in soil and incubated over 120 days to investigate the contribution of apparent priming to total SOM priming. After 120 days of pre-incubation, 48 % of added glucose was released as CO2, and 34 % of added glucose was recovered in microbial biomass. After glucose addition, microbial biomass and salt extractable organic C were similar between glucose and water addition. However, glucose addition increased the contribution of 14C-glucose to microbial biomass by 2.5-folds and to CO2 by 10-folds. This increased contribution of 14C-glucose indicated accelerated microbial biomass turnover by labile C. Furthermore, 10 and 47 μg C g−1 of previously added and incorporated into microbial biomass 14C and 12C were replaced by new 14C, which contributed to 10 % and 33 % of primed CO2 emissions, respectively. On the contrary, N addition reduced previously added 14C in both microbial biomass pool and released CO2. This may reflect that the faster microbial turnover contributes to microbial necromass and further to stable SOM formation. Similar total apparent priming (∼1.5 μg C g−1 in 120 days, mainly in the first 20 days) was observed after glucose and N addition, which contributed around 1–4 % of total priming. Unlike after glucose and N additions, the 14C released as CO2 (8 % of the remaining previously added 14C-glucose) after water addition was mainly derived from reutilization of microbial necromass. This was supported by the absence of changes in either the 14C or total C in microbial biomass. Overall, the turnover of the microbial biomass pool – the apparent priming – should not be ignored, since microbial biomass acts not only as a major determinant of SOM turnover but also as a C pool.

Aligning theoretical and empirical representations of soil carbon-to-nitrogen stoichiometry with process-based terrestrial biogeochemistry models

Soil carbon-nitrogen (C:N) stoichiometry acts as a control over decomposition and soil organic matter formation and loss, making it a key soil property for understanding ecosystem dynamics and projected ecosystems responses to global environmental change. However, the controls of soil C:N and how they respond to increasing pressures from global change agents are not fully understood. The “foundational” controls on soil C:N, namely plant and microbial C:N, have been used to predict soil C:N, but fail to accurately simulate all ecosystems and may be insufficient for predictions under global environmental change. We present an “emerging” representation of controls of soil C:N that includes plant-microbe-mineral feedbacks that have been shown to regulate soil C:N. We argue that including representation of these emerging drivers in process-based terrestrial biogeochemistry models, which include biological N fixation, mycorrhizae, priming, root exudation of organic acids, and mineralogy (including soil texture, mineral composition, and aggregation), will improve mechanistic representation of soil C:N and associated processes. Such improvements will produce models that will better simulate a variety of ecological states and predict soil C:N when global changes modify plant-microbe-mineral interactions. Here, we align our empirical understanding of controls of soil C:N with those controls represented in models, identifying contexts where emerging drivers might be particularly important to represent (e.g., priming and root exudation in nutrient-limited conditions) and areas of future work. Additionally, we show that implementing emerging drivers of soil C:N results in different simulated outcomes at steady state and in response to elevated atmospheric CO2. Our review and preliminary simulations support the need to incorporate emerging drivers of soil C:N into process-based terrestrial biogeochemistry models, allowing for both theoretical exploration of mechanisms and potentially more accurate predictions of land biogeochemical responses to global change.

Differential influences of forest floor-pyrolyzed biochar-derived and leached dissolved organic matter interaction with natural iron-bearing minerals in forest subsoil on the formation of mineral-associated soil organic matter

The vertical sequestration of dissolved organic matter (DOM) by iron minerals along the soil profile is assumed to be central to the long-term storage of the soil organic matter (SOM) pool. However, there is limited information available about how the interaction between DOM and natural iron-bearing minerals shape mineral SOM associations quantitatively and qualitatively in forest subsoils. Here, we systematically investigated the influences of forest organic layer-pyrolyzed biochar-derived DOM (BDOM) and leached DOM (LDOM) on quantity, molecular composition, and diversity of deposition layer-derived iron minerals-associated OM by using Fourier transform ion cyclotron resonance mass spectrometry and other complementary spectroscopy. Results indicated natural iron minerals (FeOx1 and FeOx2) had a greater capacity for sorbing LDOM with higher aromaticity and molecular weight than those of BDOM, and the higher proportion of goethite and short-order-range phase in natural iron minerals was closely related to the increased OM adsorption capacity. We also observed the preferential sorption of oxygen/nitrogen-rich polycyclic aromatic compounds and carboxylic-containing compounds in LDOM and concurrent the potential release of lignin-like/aromatics compounds and carboxyl/nitrogen-less aliphatic compounds from native OM coprecipitates into the solution. However, unsaturated and oxidized phenolic compounds in BDOM had a stronger affinity for FeOx through hydrophobic partitioning and specific polar interactions, and concomitantly the partial release of nitrogen-free aliphatic and other carboxyl-rich compounds. More nitrogen structures in aromatic-containing compounds can improve the saturation level and polarity of BDOM. Compared with BDOM, LDOM exerted a stronger control over the exchange of native OM from subsoil natural iron-bearing minerals and substantially enhanced the molecular diversity of the reconstituted mineral-associated OM during the adsorptive fractionation. Overall, these findings suggest the compositional evolution of DOM profoundly shapes SOM formation and persistence in forest subsoils, which is the key to understanding DOM cycling and contaminant fate during its passage through the soil.

Divergence in soil particulate and mineral-associated organic carbon reshapes carbon stabilization along an elevational gradient

Variations in climates and vegetation types along elevations in mountain ecosystems strongly reshape soil organic matter (SOM) stabilization. However, soil carbon (C) stabilization pathways from litter to SOM and potential mechanisms along elevations in the subalpine area remain unclear. Here, we investigated the C stabilization pathway from litter to particulate and mineral-associated organic matter (POM and MAOM) and associated drivers along elevational gradients in the Hengduan Mountains, China, based on δ13C signatures. Our results showed C stabilization pathways from litter to POM to MAOM, irrespective of elevation. Unexpectedly, the δ13C values of SOM and its fractions (POM and MAOM) were not significantly related to litter δ13C across elevations although litter was the main source of SOM, suggesting that other potential drivers could weaken the coordination of δ13C among litter and SOM fractions. We observed that the△13CLitter→POM (△13C between litter and POM) was more dependent on the direct effect of soil texture (i.e., sand, silt and clay). However, the △13CPOM→MAOM (△13C between POM and MAOM) was more related to microbial attributes (i.e., microbial community and enzyme activities).These results emphasizing the different stabilization procedures between POM and MAOM. Particularly, soil temperature dominantly determined △13CLitter→POM, but soil pH was the primary factor regulating the △13CPOM→MAOM. Overall, our results suggested that POM and MAOM formation occurred with different regulation processes, the POM formation was primarily via more physical pathways and MAOM formation mainly via more microbial pathways, thus providing novel insights into the better understanding of SOM formation and stabilization mechanisms in mountain ecosystems.

Bacterial interference competition and environmental filtering reduce the fungal taxonomic and functional contribution to plant residue decomposition in anoxic paddy soils

Plant residue decomposition is central to soil organic matter formation. Fungi, bacteria, and archaea are all well-known agents of residue decomposition. However, their relative taxonomic and functional contributions to plant residue decomposition in anoxic paddy soils are not well understood, and neither are the factors that govern these contributions. Here, a series of microcosms inoculated with two distinct paddy soils and amended with 13C-labeled rice straw was set up. DNA stable-isotope probing (DNA-SIP) based shotgun metagenomic sequencing was performed to reveal the relative contributions of bacteria, archaea, and fungi in rice straw degradation. Furthermore, the possible underlying mechanisms were investigated, focusing on microbial interspecies interference competition. We found that bacteria and archaea collectively accounted for 96.2∼99.5% (in CS anoxic paddy soil) and 81.7∼96.0% (in YT anoxic paddy soil) of the total abundance, while fungi accounted for only 0.5∼3.8% and 4.0∼18.3%, respectively. Phylogenetic distribution of functional genes encoding the carbohydrate-active enzyme (CAZyme) revealed that 87.7% (in CS anoxic paddy soil) and 80.9% (in YT anoxic paddy soil) of these genes were derived from bacteria and archaea, the remainder (12.3% and 19.1%) coming from fungi. The bacteria-fungi antagonism experiment indicated that fungal growth was indeed markedly inhibited by members of the two well-known antimicrobial compounds producing bacterial groups present, the Actinobacteria and the Bacilli. This study indicates that bacterial interference competition and environmental filtering (i.e., low redox/oxygen conditions) may reduce the contribution of fungi to plant residue decomposition in anoxic paddy field environments. These outcomes are important when constructing models to forecast and/or quantitative the microbial contributions to the global carbon dynamics in anoxic paddy soils.

Labile carbon-induced soil organic matter turnover in a subtropical forest under different redox conditions

Labile organic carbon (LOC) input strongly affects soil organic matter (SOM) dynamics, including gains and losses. However, it is unclear how redox fluctuations regulate these processes of SOM decomposition and formation induced by LOC input. The objective of this study was to explore the impacts of LOC input on SOM turnover under different redox conditions. Soil samples were collected in a subtropical forest. A single pulse of 13C-labeled glucose (i.e., LOC) was applied to the soil. Soil samples were incubated for 40 days under three redox treatments, including aerobic, anoxic, and 10-day aerobic followed by 10-day anoxic conditions. Results showed that LOC input affected soil priming and 13C-SOM accumulation differently under distinct redox conditions by altering the activities of various microorganisms. 13C-PLFAs (phospholipid fatty acids) were analyzed to determine the role of microbial groups in SOM turnover. Increased activities of fungi and gram-positive bacteria (i.e., the K-strategists) by LOC input could ingest metabolites or residues of the r-strategists (e.g., gram-negative bacteria) to result in positive priming. Fungi could use gram-negative bacteria to stimulate priming intensity via microbial turnover in aerobic conditions first. Reduced activities of K-strategists as a result of the aerobic to anoxic transition decreased priming intensity. The difference in LOC retention in SOM under different redox conditions was mainly attributable to 13C-particulate organic carbon (13C-POC) accumulation. Under aerobic conditions, fungi and gram-positive bacteria used derivatives from gram-negative bacteria to reduce newly formed POC. However, anoxic conditions were not conducive to the uptake of gram-negative bacteria by fungi and gram-positive bacteria, favoring SOM retention. This work indicated that redox-regulated microbial activities can control SOM decomposition and formation induced by LOC input. It is extremely valuable for understanding the contribution of soil affected by redox fluctuations to the carbon cycle.

Functional groups and mineralization kinetics of soil organic matter under contrasting hydro‐thermal regimes under conservation agriculture‐based rice–wheat system in eastern Indo‐Gangetic Plains

AbstractSoil organic carbon (SOC) sequestration is important to counteract anthropogenic climate change at the global level. Studying the effect of conservation agriculture (CA) on SOC dynamics in the presence of two distinctively different hydro‐thermal regimes across the year in rice–wheat (RW) systems in eastern Indo‐Gangetic Plains (E‐IGP) is of topical interest. The stabilization mechanism of soil organic matter (SOM), and its effect on C mineralization kinetics in these conditions is not well understood. We collected soil samples from six combinations of CA and conventional farming in an ongoing experiment at CIMMYT‐Borlaug Institute for South Asia, Bihar, India. CA enhanced SOC, specifically labile C, while decreasing mineral N, as a result of encapsulation/assimilation in aggregates/microbial biomass. Humic acids registered characteristic Fourier transform infrared (FTIR) peaks at 3200–3600 cm−1, 2920–2930 cm−1, 1645–1655 cm−1 and 1220–1240 cm−1, and displayed lesser degree of humification, aromaticity and redox status under CA. SOC and N mineralization were studied in two different hydro‐thermal regimes pertaining to rice (submergence, 35°C; SM35) and wheat (field capacity, 25°C; FC25) growing periods of E‐IGP. SM35 displayed temperature‐mediated higher decay of SOC. Decay constants of C mineralization were lesser under CA compared with CT. CA promoted higher SOM stability, evidenced by lower decay rates of SOC and N, attributed to (1) better protection of SOM in well‐aggregated soil structure and (2) an excess supply of fresh crop residues ensuring higher rate of SOM formation than its decay. Practising CA in E‐IGP is imperative towards C‐neutral agriculture, especially in the impending global warming scenario.

Soil organic matter dynamics mediated by arbuscular mycorrhizal fungi - an updated conceptual framework.

Arbuscular mycorrhizal (AM) fungi play an important role in soil organic matter (SOM) formation and stabilization. Previous studies have emphasized organic compounds produced by AM fungi as persistent binding agents for aggregate formation and SOM storage. This concept overlooks the multiple biogeochemical processes mediated by AM fungal activities, which drive SOM generation, reprocessing, reorganization, and stabilization. Here, we propose an updated conceptual framework to facilitate a mechanistic understanding of the role of AM fungi in SOM dynamics. In this framework, four pathways for AM fungi-mediated SOM dynamics are included: 'Generating', AM fungal exudates and biomass serve as key sources of SOM chemodiversity; 'Reprocessing', hyphosphere microorganisms drive SOM decomposition and resynthesis; 'Reorganizing', AM fungi mediate soil physical changes and influence SOM transport, redistribution, transformation, and storage; and 'Stabilizing', AM fungi drive mineral weathering and organo-mineral interactions for SOM stabilization. Moreover, we discuss the AM fungal role in SOM dynamics at different scales, especially when translating results from small scales to complex larger scales. We believe that working with this conceptual framework can allow a better understanding of AM fungal role in SOM dynamics, therefore facilitating the development of mycorrhiza-based technologies toward soil health and global change mitigation.

Possibility of Using Zoning of Fallow Vegetation by Vegetation Indices to Assess Organic Matter Accumulation in Postagrogenic Soils

Light gray forest soils (Eutric Retisols (Loamic, Cutanic, Ochric)) were studied under a 20–25-yr-old fallow at the stage of overgrowing by meadow vegetation, pine, and birch. The studied area plot was confined to one element of topography, without morphological evidences of erosion processes, and with relatively homogenous soil texture. To assess the influence of fallow vegetation on the formation of soil organic matter (SOM), the plant cover was zoned according to vegetation indices calculated on the basis of remote sensing data. The k-means algorithms and the Random Forest method were used for this purpose. It was shown that there were statistically significant differences between the types of land cover in terms of the SOM stocks in the upper layer of the old-arable horizon with the specification of three and four clusters. The specification of three classes of vegetation on the fallow—coniferous woody vegetation, deciduous woody vegetation, and herbaceous vegetation—proved to be the most expedient; the correctness of their allocation was confirmed by the geobotanical survey of the territory. The results of a pairwise comparison of sites occupied by different types of fallow vegetation indicated that they significantly differ in the SOM stocks only in the uppermost 5-cm-thick layer of the old-arable horizon and only for the pair of coniferous woody and herbaceous vegetation. Differences in the accumulated humus stocks in the layer of 0–10 cm were statistically significant for the soils under deciduous and coniferous woody vegetation and under herbaceous and coniferous woody vegetation. There was no significant difference in this indicator between the soils under deciduous woody vegetation and herbaceous vegetation.

Production, Concentration and Flux of Major and Trace Elements in Juniperus przewalskii Litter of the Qilian Mountains, China

Forest litter is an important guarantee for maintaining forest soil fertility and circulating material in forest ecosystems. The input of litter plays an important role in soil organic matter formation and biogeochemical cycles in forest ecosystems. However, the production and elements concentrations of Juniperus przewalskii (JP) litter in the Qilian Mountains are still unknown. In this study, we investigated the production of needle, branch and bark, cone, and impurity litters. We determined the concentrations and fluxes of major (K, Mg, Al, and Fe) and trace (Na, Mn, Zn, Cr, Ni, Cu, Pb, Co, Cd, and Ag) elements in needle litter of JP from September 2020 to August 2021. The results showed that the annual litter production was 4040.74 ± 495.96 kg ha−1 a−1. Needle and cone litters were the main components of the total litter production. The major elements (MEs) and trace elements (TEs) fluxes of litter were consistent with the litter production trend. The concentrations and fluxes of MEs and TEs in needle litter decreased in the order: K > Mg > Al > Fe > Na > Mn > Zn > Cr > Ni > Cu > Pb > Co > Cd > Ag. These results have important implications for understanding the migration processes of MEs and TEs in forest ecosystems of the Qilian Mountains.

Tracing service crops' net carbon and nitrogen rhizodeposition into soil organic matter fractions using dual isotopic brush-labeling

Recent studies emphasize the importance of rhizodeposition in soil organic matter (SOM) formation. However, its quantification in different soil fractions is still uncommon. To estimate the net carbon (C) and nitrogen (N) rhizodeposition into particulate (POM) and mineral-associated (MAOM) organic matter, we conducted a pot experiment to trace plant-derived C and N into the soil. In this study, we first evaluated the effectiveness of the dual isotope (13C and 15N) brush-labeling method on oat and vetch plants, two species commonly sown as service crops, to investigate in situ plant-soil interactions. Our results indicate that foliar brushing successfully labeled plant tissues and traced plant-derived C and N into the soil, allowing us to make a conservative estimate of net rhizodeposition. Based on soil δ13C and δ15N changes, we show that most of the net C (81.5 and 100% for oats and vetch, respectively) and N (92.4 and 93.2% for oats and vetch, respectively) rhizodeposition contributes directly to the formation of MAOM and not POM. Both species contributed similar amounts of net C rhizodeposition to the MAOM fraction (about 0.59 g plant−1), while oat net C rhizodeposition also formed a small amount of POM (0.138 g plant−1). Because vetch had low root biomass, the net C rhizodeposition:root C ratio was much higher in vetch than in oats (12.3 and 0.65, respectively). For net N rhizodeposition, vetch contributions were greater than oats in both fractions (71.4% greater in MAOM and 50.4% greater in POM). Our estimates of net C and N rhizodeposition range from 15 to 40% of the total recovered C or N. Our results demonstrate the importance of incorporating rhizodeposition into belowground biomass estimates and SOM models, and suggest that service crops provide large amounts of C and N inputs from living roots that are mainly retained in MAOM.

Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter

Soil organic matter (SOM) is comprised of a diverse array of reactive carbon molecules, including hydrophilic and hydrophobic compounds, that impact rates of SOM formation and persistence. Despite clear importance to ecosystem science, little is known about broad-scale controls on SOM diversity and variability in soil. Here, we show that microbial decomposition drives significant variability in the molecular richness and diversity of SOM between soil horizons and across a continental-scale gradient in climate and ecosystem type (arid shrubs, coniferous, deciduous, and mixed forests, grasslands, and tundra sedges). The molecular dissimilarity of SOM was strongly influenced by ecosystem type (hydrophilic compounds: 17%, P < 0.001; hydrophobic compounds: 10% P < 0.001) and soil horizon (hydrophilic compounds: 17%, P < 0.001; hydrophobic compounds: 21%, P < 0.001), as assessed using metabolomic analysis of hydrophilic and hydrophobic metabolites. While the proportion of shared molecular features was significantly higher in the litter layer than subsoil C horizons across ecosystems (12 times and 4 times higher for hydrophilic and hydrophobic compounds, respectively), the proportion of site-specific molecular features nearly doubled from the litter layer to the subsoil horizon, suggesting greater differentiation of compounds after microbial decomposition within each ecosystem. Together, these results suggest that microbial decomposition of plant litter leads to a decrease in SOM α-molecular diversity, yet an increase in β-molecular diversity across ecosystems. The degree of microbial degradation, determined by the position in the soil profile, exerts a greater control on SOM molecular diversity than environmental factors, such as soil texture, moisture, and ecosystem type.