Soil Organic Carbon Formation Research Articles

Shifting focus from external to in situ organic resources – The redesign of four tropical long-term experiments

Long-term experiments (LTEs) are critical for evaluating strategies that can maintain or increase crop yields, soil fertility and soil organic carbon (SOC), and help adapt to climate change. Yet, scientific knowledge is advancing and research questions are evolving. Therefore, it is important to review the objectives of LTEs over time. A change in their design may be necessary to keep the experimental treatments scientifically interesting, innovative, and relevant in the context of evolving agricultural challenges. Here, we describe the process of redesigning four LTEs in Kenya. These LTEs are unique in that they represent four different pedoclimatic conditions but with identical experimental treatments across sites. Initially, they focused on investigating how to maintain or increase SOC and maize yields over time by applying a combination of mineral nitrogen (N) and external organic resources. Specifically, the experimental treatments consisted of maize monoculture with different rates (1.2 and 4 t C ha−1 yr−1) and qualities of organic resources, either with or without mineral N fertilizer input. After about 20 years, it became clear that SOC was lost in most treatments. Therefore, continuing with the current experimental design was not an option. Taking advantage of the fact that the different former treatments led to different levels of soil degradation, we redesigned the LTEs to study the effectiveness of regenerative cropping strategies in rebuilding SOC and increasing crop yields starting from the different levels of soil degradation. The focus shifted from external to in situ organic inputs by increasing the root biomass of the cultivated crops. The newly established cropping system treatments are maize-legume rotation, maize-legume intercropping (double row configuration) and relay intercropping of maize with forage grass. A key finding from the previous phase of the experiments, namely, that external organic inputs with low C:N ratios are most efficient in building SOC, has been incorporated into the redesign. The relative contribution of external versus in situ organic resources is tested by splitting the cropping system treatments into those receiving either farmyard manure or green manure in the form of Tithonia diversifolia prunings and those receiving no external inputs. Split-plot treatments with and without mineral N were retained. The overall objective of studying mechanisms of tropical soil fertility maintenance and, more specifically, SOC formation, remained unchanged. However, the redesign aligned the LTEs with the current state of knowledge and pressing research questions, specifically focusing on the relative effectiveness of in-situ versus external organic inputs in SOC formation.

Shifts in C-degradation genes and microbial metabolic activity with vegetation types affected the surface soil organic carbon pool

The incorporation of plant-derived biomass by microorganisms into deceased microbial biomass, i.e., a “microbial carbon pump”, is essential for forming a soil carbon (C) pool. Therefore, microbial communities and associated functions could shape the formation of soil organic C (SOC) composition and persistence. However, the mechanism by which microorganisms mediate the degradation of various types of biomass (such as plant or microbial) and its impact on SOC formation under different vegetation types remains unclear. Herein, we analyzed microbial communities, carbohydrate-activated enzymes (CAZymes), absolute quantification of C-degradation genes, and extracellular enzyme activities to track microbial-mediated SOC formation under three vegetation types on the Loess Plateau. Changes in vegetation type influenced microbial community structure and distributions of certain bacterial groups. Specifically, dominant bacterial taxa shifted from oligotrophic Actinobacteria to eutrophic Proteobacteria from grass to forest soil. The proportion of microbial CAZymes responsible for decomposing plant-derived components (86–89%) exceeded that of microbial-derived components (11–14%), suggesting a greater capacity for the degradation of deceased plant biomass by microorganisms. There was a reduction of 14%–17% in the absolute abundance of specific C-degradation genes for hemicellulose and cellulose in forest soil compared to grass, while an increase of 20%–32% was observed in lignin and chitin degradation. This indicated a higher decomposition potential of lignin and chitin by microorganisms in forest soil. The number of CAZymes genes involved in the degradation of bacteria-derived biomass (peptidoglycan) was higher than fungi-derived biomass (chitin and glucans) and had a close correlation with the qCO2, microbial biomass C (MBC), and particulate organic C (POC). The abundance of C-degrading genes increased with the increase in the corresponding enzyme activity, indicating that enzyme activity is regulated by functional genes. In conclusion, shifts in CAZymes genes encoding for the degradation of diverse carbon sources could impact microbial metabolic activity through a microbial “carbon pump” regulation process. This mechanism could facilitate the formation of soil organic carbon and its fractions across different vegetation types.

The hidden depths of forest soil organic carbon chemistry in a pumice soil

Forest ecosystems can store massive amounts of organic carbon (OC) deep in their soils. Soil OC (SOC) is composed of several complex organic compounds of which groupings of these organic compounds can provide an insight into evaluating the formation and fate of SOC. However, there is little information available regarding the chemical composition of deep forest SOC and how they compare to upper soil depths. The objective of this study was to explore the SOC chemistry changes with increasing soil depth on a fine spatial scale in a planted forest soil derived from young volcanic erupted airfall deposits. Soil core samples to 1 m depth were collected from Puruki Experimental Forest (New Zealand) and examined for incremental depth changes in SOC functional groups, or chemical shift regions, using solid-state 13C cross polarisation magic angle spinning nuclear magnetic resonance (13C CPMAS-NMR) spectroscopy. The results showed that soil depth was a driver of change in soil chemical shift regions. The presence of a coarse-textured soil horizon, lapilli layer, at depth was a driver of significant (p < 0.05) differences between SOC functional groups. In the upper soil profile (0–10 cm), the chemical shift distribution was dominated by O-alkyl C (39%) followed by alkyl C (32%), aromatic C (23%), and carboxyl C (6%). In the deep soil layers, we found alkyl C increased below the lapilli layer (varying depth > 50 cm) compared to above the lapilli layer. In the deep soil layers the alkyl C was the dominant functional group (55%), followed by O-alkyl C (28%). Furthermore, there was a decrease at depth in aromatic (12%) and carboxyl C (5%). The A/O-A ratio increased with depth from soil above the lapilli layer compared to soils below the lapilli layer indicating a greater degree of organic matter decomposition and a corresponding decrease in the labile OC fractions. Within the lapilli layer the SOC functional groups and A/O-A ratio were highly variable. These results highlight that changes in SOC chemical composition occur with increasing soil depth, a property of deep soil that is frequently understudied, and are highly influenced by the multi layered nature of soil derived from volcanic airfall deposits.

The ability of soils to aggregate, more than the state of aggregation, promotes protected soil organic matter formation

Efforts to increase soil organic carbon (SOC) are pursued as a viable climate change mitigation strategy. Boosting SOC stocks requires increasing plant carbon (C) inputs and promoting their persistence in SOC. In well aerated mineral soils, water soluble inputs are expected to stabilize through chemical binding to minerals, forming mineral-associated organic carbon (MAOC) before or after microbial transformation, while structural inputs are expected to stabilize as particulate organic carbon (POC) via protection in soil aggregates. Although ample research is centered on the effects of soil aggregation, its disturbance (e.g., tillage), and microbial processing on SOC cycling, we still lack mechanistic understanding of how plant C input type (i.e., soluble versus structural) and disturbance (i.e., aggregate disruption) independently and in interaction affect POC and MAOC formation and stabilization in soils with inherently different degrees of aggregation.To this end, using 13C enriched structural and soluble plant inputs, we traced SOC formation and stabilization in a lab incubation experiment in soils with differing levels of aggregation, and capacity to form aggregates after disturbance. Our results showed that soluble plant inputs contributed substantially to MAOC and that higher formation and persistence of MAOC occurred in the highly aggregated soil. Moreover, the highly aggregated soil retained more soluble inputs stabilized as MAOC when disturbed. Disturbance in this fine textured, organic carbon rich soil stimulated regeneration of aggregates around structural plant inputs leading to greater persistence of aggregate-occluded POC. Soluble plant inputs, specifically, as well as structural plant inputs in the highly aggregated disturbed soil, compensated for SOC lost due to disturbance alone.Overall, this study provides mechanistic evidence suggesting that management strategies for SOC accrual should consider soil type, aggregation potential, and plant attributes to inform decisions surrounding tillage frequency and cropping regimes. Our mechanistic findings require testing. If confirmed in the field, they would suggest that no disturbance in tandem with high structural plant C inputs would benefit most SOC accrual in systems with soils that have little capacity to form organo-mineral complexes, including large aggregates. On the contrary, with sustained plant inputs, occasional disturbance in systems with soils that have a high capacity to form organo-mineral complexes can promote both POC and MAOC formation and stabilization.

Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming

Increasing soil organic carbon (SOC) in croplands by switching from conventional to conservation management may be hampered by stimulated microbial decomposition under warming. Here, we test the interactive effects of agricultural management and warming on SOC persistence and underlying microbial mechanisms in a decade-long controlled experiment on a wheat-maize cropping system. Warming increased SOC content and accelerated fungal community temporal turnover under conservation agriculture (no tillage, chopped crop residue), but not under conventional agriculture (annual tillage, crop residue removed). Microbial carbon use efficiency (CUE) and growth increased linearly over time, with stronger positive warming effects after 5 years under conservation agriculture. According to structural equation models, these increases arose from greater carbon inputs from the crops, which indirectly controlled microbial CUE via changes in fungal communities. As a result, fungal necromass increased from 28 to 53%, emerging as the strongest predictor of SOC content. Collectively, our results demonstrate how management and climatic factors can interact to alter microbial community composition, physiology and functions and, in turn, SOC formation and accrual in croplands.

Effect of forest planting patterns on the formation of soil organic carbon during litter lignocellulose degradation from a microbial perspective.

Litter decomposition is an important source of soil organic carbon, and it plays a key role in maintaining the stability of forest ecosystems. The microbial mechanism of soil organic carbon (SOC) formation in different urban forest planting patterns during litter lignocellulose degradation is still unclear. The key genes, microbes, and metabolites in the process of lignocellulose degradation and SOC formation were determined by metagenomics and metabolomics in different litter decomposition layers and soil layers in different urban forest planting patterns, including three types of broadleaf forests (BP forests), three types of coniferous forests (CP forests), and two types of mixed coniferous and broadleaf forests (MCBP forests). The results indicated that the cellulose, hemicellulose, and lignin concentrations from the undecomposed layer to the totally decomposed layer decreased by 70.07, 86.83, and 73.04% for CP litter; 74.30, 93.80, and 77.55% for BP litter; and 62.51, 48.58, and 90.61% for MCBP litter, respectively. The soil organic carbon of the BP forests and MCBP forests was higher than that of the CP forests by 38.06 and 94.43% for the 0-10 cm soil layer and by 38.55 and 20.87% for the 10-20 cm soil layer, respectively. Additionally, the gene abundances of glycoside hydrolases (GHs) and polysaccharide lyases (PLs) in the BP forests were higher than those in the MCBP forests and CP forests. Amino acid metabolism, sugar metabolism, TCA metabolism, and cAMP signaling metabolism were mainly between the CP forests and BP forests, while the TCA cycle, pyruvate metabolism, phenylalanine metabolism, and tyrosine metabolism were mainly between the BP forests and MCBP forests during litter decomposition. Additionally, ammonia nitrogen and hemicellulose were key factors driving SOC formation in the CP forests, while ammonia nitrogen, hemicellulose, and lignocellulose-degrading genes were key factors driving SOC formation in the BP forests. For the MCBP forests, cellulose, pH, ammonia nitrogen, and lignin were key factors driving SOC formation. Our findings revealed that the BP forests and MCBP forests had stronger lignocellulose degradation performance in the formation of SOC. This study provided a theoretical basis for the flow and transformation of nutrients in different urban forest management patterns.

Precipitation change affects forest soil carbon inputs and pools: A global meta-analysis

The impacts of precipitation change on forest carbon (C) storage will have global consequences, as forests play a major role in sequestering anthropogenic CO2. Although forest soils are one of the largest terrestrial C pools, there is great uncertainty around the response of forest soil organic carbon (SOC) to precipitation change, which limits our ability to predict future forest C storage. To address this, we conducted a meta-analysis to determine the effect of drought and irrigation experiments on SOC pools, plant C inputs and the soil environment based on 161 studies across 139 forest sites worldwide. Overall, forest SOC content was not affected by precipitation change, but both drought and irrigation altered plant C inputs and soil properties associated with SOC formation and storage. Drought may enhance SOC stability by altering soil aggregate fractions, but the effect of irrigation on SOC fractions remains unexplored. The apparent insensitivity of SOC to precipitation change can be explained by the short duration of most experiments and by biome-specific responses of C inputs and pools to drought or irrigation. Importantly, we demonstrate that SOC content is more likely to decline under irrigation at drier temperate sites, but that dry forests are currently underrepresented across experimental studies. Thus, our meta-analysis advances research into the impacts of precipitation change in forests by revealing important differences among forest biomes, which are likely linked to plant adaptation to extant conditions. We further demonstrate important knowledge gaps around how precipitation change will affect SOC stability, as too few studies currently consider distinct soil C pools. To accurately predict future SOC storage in forests, there is an urgent need for coordinated studies of different soil C pools and fractions across existing sites, as well as new experiments in underrepresented forest types.

Source to Sink of Lignin Phenols in a Subtropical Forest of Southwest China

In biodiverse forest ecosystems, plant diversity has been reported to increase plant-derived lignin accumulation and soil organic carbon (SOC) storage. However, little is known about the fate of lignin and its degradation dynamics from plant to soil. This process is critical for the formation of SOC, especially in natural forest ecosystems with diverse plant species. This study presents the lignin biomarker characteristics of several common plant species and in mixed litter. The study was conducted in 45 plots along a plant species diversity gradient in a subtropical forest located in southwest China. Our results demonstrate that lignin content and its biochemical characteristics in plant leaves vary among species, while different plant species also alter the content of lignin and its monomeric compounds in the litter. Lignin compounds are gradually disintegrated from plant leaf to litter and then to soil, further indicating that plant-derived lignin from plant sources contributes to the formation and accumulation of forest SOC. These findings provide novel information on the linkage between tree species diversity and lignin accumulation while indicating the role of plant-derived lignin on SOC storage. These results may be useful in predicting forest soil C dynamics in Earth system models.

Litter quality controls tradeoffs in soil carbon decomposition and replenishment in a subtropical forest

Abstract Species‐rich forests can produce litter of varying carbon (C) and nitrogen (N) composition (i.e. quality), which can affect decomposition and play a central role in long‐term soil organic carbon (SOC) accumulation. However, how differences in litter quality affect SOC decomposition and formation remains unclear over the full litter decomposition trajectory. We followed the in situ complete decomposition of added 13C‐labelled high‐ (low C:N) and low‐quality (high C:N) leaf‐litter and its effect on particulate organic matter (POM) and mineral‐associated organic matter (MAOM) fractions over 2 years in a natural subtropical forest. We found that during early stages of decomposition, low‐quality litter inputs decreased SOC via a positive priming effect (i.e. new C inputs favoured decomposition of native SOC), but these SOC losses were offset by SOC gains observed via a negative priming effect during decomposition of high‐quality litter. In contrast, this pattern reversed during late stages of decomposition—SOC losses via a positive priming effect induced by high‐quality litter were offset by SOC gains via a negative priming effect induced by low‐quality litter. Over the full decomposition of litter, both high‐ and low‐quality litter stimulated microbial breakdown of SOC tied to POM, but also replenished more persistent SOC that associated with soil minerals (MAOM). Altogether, we observed that low‐quality litter formed twice as much new SOC as high‐quality litter (24% vs. 12% of added litter‐C). We extend the notion of the priming effect from primarily a negative role promoting losses of native SOC, to a functional role that can replenish persistent SOC. Synthesis. Our measurements raise the possibility that, in species‐rich forests, high‐ and low‐quality litter decomposition play opposite but dynamically complementary roles in renewing POM—both by inducing its decomposition and formation—while exclusively favouring MAOM formation, which can help explain how differences in litter quality favour SOC accumulation and persistence. Global change factors that shift plant community composition may ultimately affect the fate of soil C, as changes in litter quality may force soil transitions from sinks to sources or sources to sinks of atmospheric CO2.

Grazing facilitates litter-derived soil organic carbon formation in grasslands by fostering microbial involvement through microenvironment modification

Grasslands store 10–30 % of the global soil organic carbon (SOC) and have the potential to mitigate the increase in atmospheric CO2 concentrations. Grazing plays a crucial role in regulating SOC storage in grassland ecosystems. However, the mechanistic understanding of how grazing influences the SOC dynamic still needs to be improved. We investigated how grazing-induced microenvironment changes influence the microbial assimilation of plant litter C and SOC formation from decomposed litter C in a multi-year field experiment, where grazing was simulated with mowing, dung and urine return, and trampling. We incubated 13C labeled litter in PVC collars to trace the microbial assimilation of litter C and the fate of litter C in the SOC after decomposition. While the grazing treatments changed soil properties marginally, mowing decreased above-ground plant biomass, litter mass, plant height, and plant cover (−12 % to −79 %). Accordingly, mowing treatment increased the exposure of litter to UV radiation (+38 %) and therefore facilitated the microbial assimilation of litter C (+20 %) and the SOC formation (+15 %). Trampling treatment promoted the transformation of litter C to SOC pools by mixing litter and soil (+34 %). Dung and urea return treatment did not affect SOC formation due to a marginal change in available nitrogen. Collectively, our results suggest that grazing facilitates litter-derived SOC formation by regulating microbial involvement through changes in the microenvironment. Our study indicates that grazing promotes SOC formation from plant litter, which maintains SOC storage in grasslands. Accurate quantification of the contribution of plant C input to SOC pools in different grasslands under various utilization is the next step to better predict SOC dynamics.

Formation of soil organic carbon pool is regulated by the structure of dissolved organic matter and microbial carbon pump efficacy: A decadal study comparing different carbon management strategies.

To achieve long-term increases in soil organic carbon (SOC) storage, it is essential to understand the effects of carbon management strategies on SOC formation pathways, particularly through changes in microbial necromass carbon (MNC) and dissolved organic carbon (DOC). Using a 14-year field study, we demonstrate that both biochar and maize straw lifted the SOC ceiling, but through different pathways. Biochar, while raising SOC and DOC content, decreased substrate degradability by increasing carbon aromaticity. This resulted in suppressed microbial abundance and enzyme activity, which lowered soil respiration, weakened in vivo turnover and ex vivo modification for MNC production (i.e., low microbial carbon pump "efficacy"), and led to lower efficiency in decomposing MNC, ultimately resulting in the net accumulation of SOC and MNC. In contrast, straw incorporation increased the content and decreased the aromaticity of SOC and DOC. The enhanced SOC degradability and soil nutrient content, such as total nitrogen and total phosphorous, stimulated the microbial population and activity, thereby boosting soil respiration and enhancing microbial carbon pump "efficacy" for MNC production. The total C added to biochar and straw plots were estimated as 27.3-54.5 and 41.4 Mg C ha-1 , respectively. Our results demonstrated that biochar was more efficient in lifting the SOC stock via exogenous stable carbon input and MNC stabilization, although the latter showed low "efficacy". Meanwhile, straw incorporation significantly promoted net MNC accumulation but also stimulated SOC mineralization, resulting in a smaller increase in SOC content (by 50%) compared to biochar (by 53%-102%). The results address the decadal-scale effects of biochar and straw application on the formation of the stable organic carbon pool in soil, and understanding the causal mechanisms can allow field practices to maximize SOC content.

Priming effects decrease with the quantity of cover crop residues – Potential implications for soil carbon sequestration

Meta-analyses suggest a global potential of cover crops to increase soil organic carbon (SOC) stocks, yet with a large variation across studies, which underlines the need to understand the effect of cover crops on carbon (C) sequestration under specific soil and climate conditions. We studied the C sequestration potential from cover crops, based on a Danish long-term field experiment (LTE) initiated in 1997, where SOC and C in the fractions of particulate organic matter (POM) and mineral associated organic matter (MAOM) was measured to 1-m depth. Next, we performed a mesocosm study where the fate of 14C-labeled cover crop residues (fodder radish, Raphanus sativus L.) and SOC priming were traced in two texturally similar soils from the LTE with different SOC concentrations (2.0 vs. 2.6% SOC). The results showed that cover cropping for up two decades had negligible effect on SOC in POM and MAOM fractions. Yet, the mesocosm study showed considerable overall SOC increases (20–25% of added C) when the cover crop C input exceeded rates of 0.2–0.3 mg C g−1 in the two soils. This was due to a combination of new SOC formation and priming effects shifting from positive to negative. The input rates of 0.2–0.3 mg C g−1 correspond to the C input from cover crops with an aboveground yield of approximately 0.7–1.1 Mg dry matter ha−1, which is a level not always achieved at the field site. The combined observations from the field and mesocosm study suggest that SOC buildup was not constrained by soil C saturation, but rather by low cover crop productivity and/or positive priming effects. Therefore, agricultural management practices (e.g., species choice and sowing time) should be adopted to achieve a sufficient cover crop C input to secure that the positive priming effect is not exceeding the rate of SOC formation.

Warming accelerates belowground litter turnover in salt marshes – insights from a Tea Bag Index study

Abstract. Salt marshes play an important role in the global carbon cycle due to the large amount of organic carbon stored in their soils. Soil organic carbon formation in these coastal wetland ecosystems is strongly controlled by the plant primary production and initial decomposition rates of plant belowground biomass and litter. This study used a field warming experiment to investigate the response of belowground litter breakdown to rising temperature (+1.5 and +3.0 ∘C) across whole-soil profiles (0–60 cm soil depth) and the entire intertidal flooding gradient ranging from the pioneer zone via the low marsh to high marsh. We used standardized plant materials, following the Tea Bag Index approach, to assess the initial decomposition rate (k) and the stabilization factor (S) of labile organic matter inputs to the soil system. While k describes the initial pace at which labile (= hydrolyzable) organic matter decomposes, S describes the part of the labile fraction that does not decompose during deployment in the soil system and stabilizes due to biochemical transformation. We show that warming strongly increased k consistently throughout the entire soil profile and across the entire flooding gradient, suggesting that warming effects on the initial decomposition rate of labile plant materials are independent of the soil aeration (i.e., redox) status. By contrast, negative effects on litter stabilization were less consistent. Specifically, warming effects on S were restricted to the aerated topsoil in the frequently flooded pioneer zone, while the soil depth to which stabilization responded increased across the marsh elevation gradient via the low to high marsh. These findings suggest that reducing soil conditions can suppress the response of belowground litter stabilization to rising temperature. In conclusion, our study demonstrates marked differences in the response of initial decomposition rate vs. stabilization of labile plant litter to rising temperature in salt marshes. We argue that these differences are strongly mediated by the soil redox status along flooding and soil-depth gradients.

Microbial carbon use efficiency promotes global soil carbon storage

Soils store more carbon than other terrestrial ecosystems1,2. How soil organic carbon (SOC) forms and persists remains uncertain1,3, which makes it challenging to understand how it will respond to climatic change3,4. It has been suggested that soil microorganisms play an important role in SOC formation, preservation and loss5–7. Although microorganisms affect the accumulation and loss of soil organic matter through many pathways4,6,8–11, microbial carbon use efficiency (CUE) is an integrative metric that can capture the balance of these processes12,13. Although CUE has the potential to act as a predictor of variation in SOC storage, the role of CUE in SOC persistence remains unresolved7,14,15. Here we examine the relationship between CUE and the preservation of SOC, and interactions with climate, vegetation and edaphic properties, using a combination of global-scale datasets, a microbial-process explicit model, data assimilation, deep learning and meta-analysis. We find that CUE is at least four times as important as other evaluated factors, such as carbon input, decomposition or vertical transport, in determining SOC storage and its spatial variation across the globe. In addition, CUE shows a positive correlation with SOC content. Our findings point to microbial CUE as a major determinant of global SOC storage. Understanding the microbial processes underlying CUE and their environmental dependence may help the prediction of SOC feedback to a changing climate.

Divergent accumulation of microbial and plant necromass along paddy soil development in a millennium scale

Plant inputs and their subsequent microbial transformations drive the formation and accumulation of soil organic carbon (SOC). Rice paddy is more conducive to SOC accumulation than uplands, primarily because of predominant anaerobic conditions. However, the role of microbes and plants in the buildup of SOC under prolonged rice cultivation has not been well explored in the literature. In a millennium-scale paddy soil chronosequence, we used amino sugars (AS) and lignin phenols (LN) as tracers to investigate microbial and plant-derived necromass changes and evaluated their contributions to SOC accumulation with increasing rice cultivation duration. Across the 1000-year rice cultivation process, AS and LN contents increased with SOC accumulation. Soil pH and salinity are considered to play vital roles in regulating the retention of AS and LN. In contrast to the control of soil enzyme activity on LN accrual (e.g., peroxidase), the microbial biomass and fungi-to-bacteria ratio greatly affected AS accumulation in paddy soil. The components of AS and LN also changed with time, exhibiting a significant accumulation of galactosamine and cinnamyl phenol units in the late stage. Long-term rice cultivation is more conducive to the accumulation of bacterial residues. AS demonstrated a greater contribution to SOC than LN compounds within 100 years, whereas the contribution of LN ultimately exceeded AS in the late stage. Concurrently, we found a higher degree of oxidative lignin degradation in younger soils and reduced degradation with increasing duration of rice paddy cultivation. The accumulation of microbial necromass is more than plant necromass in the early stage, and it is the opposite in the late stage. Our results are critical to understand the formation and sequestration processes of SOC in paddy soils.

Carbon sequestration in paddy soils: Contribution and mechanisms of mineral-associated SOC formation

In this work, comparative study of paddy and upland soils were carried out to unravel mechanisms of enhanced soil organic carbon (SOC) sequestration in paddy soils using fractionation methods, 13C NMR and Nano-SIMS analysis, as well as organic layer thickness calculations (Core-Shell model). The results showed that although there is a strong increase in particulate SOC in paddy soils compared to that in the upland soils, the increase in mineral-associated SOC is more important, explaining 60–75% of SOC increase in the paddy soils. In the wet and dry alternate cycles of paddy soil, iron (hydr)oxides adsorb relatively small and soluble organic molecules (fulvic acid-like), promote catalytic oxidation and polymerization, thus accelerating formation of larger organic molecules. Upon reductive iron dissolution, these molecules are released and incorporated into existing less soluble organic compounds (humic acid or humin-like), which are coagulated and associated with clay minerals, becoming part of the mineral-associated SOC. The functioning of this “iron wheel” process stimulates accumulation of relatively young SOC into mineral-associated organic carbon pool, and reduces the difference in chemical structure between oxides-bound and clay-bound SOC. Further, the faster turnover of oxides and soil aggregates in paddy soil also facilities interaction between SOC and minerals. The formation of mineral-associated SOC may delay degradation of organic matter during both wet and dry period in the paddy field, therefore enhancing carbon sequestration in paddy soils.

Linking soil organic carbon dynamics to microbial community and enzyme activities in degraded soil remediation by reductive soil disinfestation

Reductive soil disinfestation (RSD) is a widely practiced strategy for remediating soil degradation that seriously threatens crop production and sustainable agriculture. However, the soil organic carbon (SOC) dynamics and its underlying mechanisms induced by RSD remain unknown. To clarify this problem, a field experiment explored the SOC dynamics under degraded soils (C3) remediated with CK (untreated) and RSD (combination of added maize straw (C4), water flooding, and plastic mulch). The relationships of SOC dynamics with microbial community composition and activities of C-related hydrolase were also disentangled using structural equation model (SEM) and variation partitioning analysis (VPA). Results indicated that the SOC concentration under CK treatment decreased by 0.96 g C kg−1 compared with that in the initial soil, while the SOC concentration under RSD treatment increased by 1.26 g C kg−1 because of old SOC loss (0.56 g C kg−1) and new SOC formation (1.82 g C kg−1). Compared to the CK, the RSD increased the soil dissolved organic C (DOC), but decreased the microbial biomass C (MBC) and abundances of bacteria and fungi. The soil microbial community shifted from Proteobacteria and Actinobacteria to Firmicutes and Ascomycota after RSD treatment, and the activities of C-related hydrolase were also enhanced, such as β-glucosidase, cellobiohydrolase, β-xylosidase, and invertase. The SEM and VPA suggested that the new SOC formation and the reduced old SOC loss under RSD treatment were collaboratively driven by soil properties (i.e., redox potential, DOC, and MBC), microbial taxa (i.e., Arthobacter, Symbiobacterium) and hydrolase activities (i.e., BG and CBH). Meanwhile, the RSD doubled the yield of subsequent tomato by mitigating soil degradation (i.e., salinization and Fusarium oxysporum) and increasing the SOC concentration. In summary, RSD, as a remediation strategy for soil degradation, can increase SOC concentration by modifying microbial community and C-related hydrolase activities.

Divergent accumulation of amino sugars and lignins mediated by soil functional carbon pools under tropical forest conversion

Tropical primary forests are being destroyed at an alarming rate and converted for other land uses which is expected to greatly influence soil carbon (C) cycling. However, our understanding of how tropical forest conversions affect the accumulation of compounds in soil functional C pools remains unclear. Here, we collected soils from primary forests (PF), secondary forests (SF), oil-palm (OP), and rubber plantations (RP), and assessed the accumulation of plant- and microbial-derived compounds within soil organic carbon (SOC), particulate (POC) and mineral-associated (MAOC) organic C. PF conversion to RP greatly decreased SOC, POC, and MAOC concentrations, whereas conversion to SF increased POC concentrations and decreased MAOC concentrations, and conversion to OP only increased POC concentrations. PF conversion to RP decreased lignin concentrations and increased amino sugar concentrations in SOC pools which increased the stability of SOC, whereas conversion to SF only increased the lignin concentrations in POC, and conversion to OP just increased lignin concentrations in POC and decreased it in MAOC. We observed divergent dynamics of amino sugars (decrease) and lignin (increase) in SOC with increasing SOC. Only lignin concentrations increased in POC with increasing POC and amino sugars concentrations decreased in MAOC with increasing MAOC. Conversion to RP significantly decreased soil enzyme activities and microbial biomasses. Lignin accumulation was associated with microbial properties, whereas amino sugar accumulation was mainly associated with soil nutrients and stoichiometries. These results suggest that the divergent accumulation of plant- and microbial-derived C in SOC was delivered by the distribution and original composition of functional C pools under forest conversions. Forest conversions changed the formation and stabilization processes of SOC in the long run which was associated with converted plantations and management. The important roles of soil nutrients and stoichiometry also provide a natural-based solution to enhance SOC sequestration via nutrient management in tropical forests.

Potential impacts of climate change on the productivity and soil carbon stocks of managed grasslands.

Rain-fed pastoral systems are tightly connected to meteorological conditions. It is, therefore, likely that climate change, including changing atmospheric CO2 concentration, temperature, precipitation and patterns of climate extremes, will greatly affect pastoral systems. However, exact impacts on the productivity and carbon dynamics of these systems are still poorly understood, particularly over longtime scales. The present study assesses the potential effects of future climatic conditions on productivity and soil organic carbon (SOC) stocks of mowed and rotationally grazed grasslands in France. We used the CenW ecosystem model to simulate carbon, water, and nitrogen cycles in response to changes in environmental drivers and management practices. We first evaluated model responses to individual changes in each key meteorological variable to get better insights into the role and importance of each individual variable. Then, we used 3 sets of meteorological variables corresponding to 3 Representative Concentration Pathways (RCP 2.6, RCP 4.5 and RCP 8.5) for long-term model runs from 1975 to 2100. Finally, we used the same three RCPs to analyze the responses of modelled grasslands to extreme climate events. We found that increasing temperature slightly increased grasslands productivities but strongly reduced SOC stocks. A reduction in precipitation led to reductions of biomass and milk production but increased SOC. Conversely, doubling CO2 concentration strongly increased biomass and milk production and marginally reduced SOC. These SOC trends were unexpected. They arose because both increasing precipitation and CO2 increased photosynthetic carbon gain, but they had an even greater effect on the proportion of biomass that could be grazed. The amount of carbon remaining on site and able to contribute to SOC formation was actually reduced under both higher precipitation and CO2. The simulations under the three RCPs indicated that grassland productivity was increased, but that required higher N fertilizer application rates and also led to substantial SOC losses. We thus conclude that, while milk productivity may continue at current rates under climate change, or even increase slightly, there could be some soil C losses over the 21st century. In addition, under the highest-emission scenario, the increasing importance of extreme climate conditions (heat waves and droughts) might render conditions at our site in some years as unsuitable for milk production. It highlights the importance of tailoring farming practices to achieve the dual goals of maintaining agricultural production while safeguarding soil C stocks.

Differential effects of forest-floor litter and roots on soil organic carbon formation in a temperate oak forest

Both forest-floor litter and roots are known to be involved in the formation of soil organic carbon (SOC), but it remains elusive how the two contrasting types of plant carbon sources would differentiate in their effects on SOC. Here we used field-based soil mesocosms to study the responses of SOC components (i.e. mineral-associated organic C [MAOC], particulate organic C [POC], and dissolved organic C [DOC]) and pathways of production (i.e. plant-derived vs. microbial-derived C compounds) to multi-year treatments of forest-floor litter and roots in a temperate oak forest in central China. After eight years, the concentrations of both POC and MAOC were significantly higher in plots with presence of forest-floor litter than in those exclusive of both forest-floor litter and roots at the soil depth of 0–5 cm; roots predominantly affected POC but not the total SOC. The contributions from the forest-floor litter and roots to total SOC and its components were all non-additive; the plots with co-occurrence of forest-floor litter and roots had 49.7% less total SOC, 36.6% less POC, and 54.7% less MAOC, than the sum of the plots with only forest-floor litter or roots, at the soil depth of 0–5 cm. The concentrations of both lignin phenols and microbial biomass carbon (MBC) were significantly higher in plots with only forest-floor litter than in those exclusive of both forest-floor litter and roots down to a depth of 20 cm, and the plant-derived neutral sugars were significantly higher in plots with only forest-floor litter than in those exclusive of both forest-floor litter and roots at the soil depth of 0–10 cm. In contrast, the concentration of lignin phenols was significantly higher in plots with only roots than in those exclusive of both forest-floor litter and roots below the depth of 5 cm, and the concentrations of MBC and microbial-derived neutral sugars were higher in plots with only roots than in those exclusive of both forest-floor litter and roots at the soil depth of 0–10 cm. The plots with co-occurrence of forest-floor litter and roots had a significantly higher concentration of lignin phenols at all soil depths investigated, as well as higher concentrations of the plant- and microbial-derived neutral sugars and MBC at the soil depth of 0–5 cm, than those exclusive of both forest-floor litter and roots; the effects were all non-additive such that the plots with co-occurrence of forest-floor litter and roots had less plant- and microbial-derived C compounds than the sum of the values between the plots with only forest-floor litter and the plots with only roots. The contributions of amino sugars to SOC did not significantly respond to either the treatments with forest-floor litter and roots or soil depth, albeit variable MBC concentrations. In addition, our results show that the microbial-derived neutral sugars were positively correlated with plant-derived neutral sugars. Findings in this study provide empirical evidence on the primacy of forest-floor litter in SOC pool at the soil depth of 0–5 cm, and demonstrate the differential roles and contributions between forest-floor litter and roots in the pathways of SOC formation and spatial differentiation of carbon compounds.