Soil Microbial Metabolism Research Articles

Diversified Vegetation Cover Alleviates Microbial Resource Limitations within Soil Aggregates in Tailings.

Resource demand by soil microorganisms critically influences microbial metabolism and then influences ecosystem resilience and multifunctionality. The ecological remediation of abandoned tailings is a topic of broad interest, yet our understanding of microbial metabolic status in restored soils, particularly at the aggregate scale, remains limited. This study investigated microbial resources within soil aggregates from revegetated tailings and applied a vector model of ecoenzymatic stoichiometry to examine how different vegetation patterns (grassland, forest, or bare land control) impact microbial resource limitation. Five-year vegetation restoration significantly elevated carbon (C) and nitrogen (N) concentrations and their stoichiometric ratios in soil aggregates (approximately 2-fold), although these increases were not translated to in the microbial biomass and its stoichiometry. The activities of C- and phosphorus (P)-acquiring extracellular enzymes in these aggregates increased substantially postvegetation, with the most pronounced escalation in macroaggregates (>0.25 mm). The vector model results indicated soil microbial metabolism was colimited by C and P, most acutely in microaggregates (<0.25 mm). This colimitation was exacerbated by monotypic vegetation cover but mitigated under diversified vegetation cover. Soil nutrient stoichiometric ratios in vegetation restoration controlled microbial resource limitation, overshadowing the impact of heavy metals. Our findings underscore that optimizing resource allocation within soil aggregates through strategic revegetation can enhance microbial metabolism in tailings, which advocates for the implementation of diverse vegetation covers as a viable strategy to improve the ecological development of degraded landscapes.

Rubber-Based Agroforestry Ecosystems Enhance Soil Enzyme Activity but Exacerbate Microbial Nutrient Limitations

Agroforestry ecosystems are an efficient strategy for enhancing soil nutrient conditions and sustainable agricultural development. Soil extracellular enzymes (EEAs) are important drivers of biogeochemical processes. However, changes in EEAs and chemometrics in rubber-based agroforestry systems and their mechanisms of action are still not fully understood. Distribution of EEAs, enzymatic stoichiometry, and microbial nutrient limitation characteristics of rubber plantations under seven planting patterns (RM, rubber monoculture system; AOM, Hevea brasiliensis-Alpinia oxyphylla Miq; PAR, Hevea brasiliensis-Pandanus amaryllifolius Roxb; AKH, Hevea brasiliensis-Alpinia katsumadai Hayata; CAA, Hevea brasiliensis-Coffea Arabica; CCA, Hevea brasiliensis-Cinnamomum cassia (L.) D. Don, and TCA, Hevea brasiliensis-Theobroma Cacao) were analyzed to investigate the metabolic limitations of microorganisms and to identify the primary determinants that restrict nutrient limitation. Compared with rubber monoculture systems, agroforestry ecosystems show increased carbon (C)-acquiring enzyme (EEAC), nitrogen (N)-acquiring enzyme (EEAN), and phosphorus (P)-acquiring enzyme (EEAP) activities. The ecoenzymatic stoichiometry model demonstrated that all seven plantation patterns experienced C and N limitation. Compared to the rubber monoculture system, all agroforestry systems exacerbated the microbial limitations of C and N by reducing the vector angle and increasing vector length. P limitation was not detected in any plantation pattern. In agroforestry systems, progression from herbs to shrubs to trees through intercropping results in a reduction in soil microbial nutrient constraints. This is primarily because of the accumulation of litter and root biomass in tree-based systems, which enhances the soil nutrient content (e.g., soil organic carbon, total nitrogen, total phosphorus, and ammonium nitrogen) and accessibility. Conversely, as soil depth increased, microbial nutrient limitations tended to become more pronounced. Partial least squares path modelling (PLS-PM) indicated that nutrient ratios and soil total nutrient content were the most important factors influencing microbial C limitation (−0.46 and 0.40) and N limitation (−0.30 and −0.42). This study presented novel evidence regarding the constraints and drivers of soil microbial metabolism in rubber agroforestry systems. Considering the constraints of soil nutrients and microbial metabolism, intercropping of rubber trees with arboreal species is recommended over that of herbaceous species to better suit the soil environment of rubber plantation areas on Hainan Island.

Asymmetric winter warming reduces microbial carbon use efficiency and growth more than symmetric year-round warming in alpine soils

Asymmetric seasonal warming trends are evident across terrestrial ecosystems, with winter temperatures rising more than summer ones. Yet, the impact of such asymmetric seasonal warming on soil microbial carbon metabolism and growth remains poorly understood. Using 18O isotope labeling, we examined the effects of a decade-long experimental seasonal warming on microbial carbon use efficiency (CUE) and growth in alpine grassland ecosystems. Moreover, the quantitative stable isotope probing with 18O-H2O was employed to evaluate taxon-specific bacterial growth in these ecosystems. Results show that symmetric year-round warming decreased microbial growth rate by 31% and CUE by 22%. Asymmetric winter warming resulted in a further decrease in microbial growth rate of 27% and microbial CUE of 59% compared to symmetric year-round warming. Long-term warming increased microbial carbon limitations, especially under asymmetric winter warming. Long-term warming suppressed the growth rates of most bacterial genera, with asymmetric winter warming having a stronger inhibition on the growth rates of specific genera (e.g., Gp10, Actinomarinicola, Bosea, Acidibacter, and Gemmata) compared to symmetric year-round warming. Bacterial growth was phylogenetically conserved, but this conservation diminished under warming conditions, primarily due to shifts in bacterial physiological states rather than the number of bacterial species and community composition. Overall, long-term warming escalated microbial carbon limitations, decreased microbial growth and CUE, with asymmetric winter warming having a more pronounced effect. Understanding these impacts is crucial for predicting soil carbon cycling as global warming progresses.

Long-term rice-crayfish farming alters soil dissolved organic carbon quality and biodegradability by regulating microbial metabolism and iron oxidation

The biodegradability of dissolved organic carbon (DOC) is a crucial process in the migration and transformation of soil organic carbon (SOC), and play a vital role in the global soil carbon (C) cycle. Although the significance of DOC in SOC transportation and microbial utilization is widely acknowledged, the impact of long-term rice-crayfish (RC) farming on the content, quality, and biodegradability of DOC in paddy soils, as well as regulatory mechanisms involved, remains unclear. To address this gap, a space-for-time method was employed to investigate the effects of different RC farming durations (1-, 5-, 10-, 15-, and 20- years) on the quality and biodegradability of DOC, as well as their relationship with soil microbial metabolism and minerals in this study. The results revealed that continuous RC farming increased the soil DOC content, but reduced DOC biodegradability. Specifically, after 20 years of continuous RC farming, the DOC content increased by 52.7% compared to the initial year, whereas the DOC biodegradability decreased by 63.4%. Analysis using three-dimensional fluorescence and ultraviolet spectroscopy demonstrated that continuous RC farming resulted in a decrease in the relative abundance of humus-like fractions, humification, and aromaticity indexes in DOC, but increased the relative abundance of protein-like fractions, biological, and fluorescence index, indicating that long-term RC farming promoted the simple depolymerization of the molecular structure of DOC. Continuous RC farming increased the activity of hydrolase involved in soil nitrogen (N) and phosphorus (P) cycles and oxidase, but decreasing the hydrolase C/N and C/P acquisition ratios; moreover, it also stimulated an increase in soil iron oxides and exchangeable calcium content. Structural equation modeling suggests that soil hydrolases and iron oxides are the primary drivers of DOC quality change, with DOC biodegradability being driven solely by soil iron oxides and not regulated by DOC quality. In conclusion, long-term RC farming promotes the catalytic decomposition of DOC aromatic substances and the production of DOC protein-like components by increasing soil oxidase activity and decreasing the hydrolase C/N acquisition ratio; these processes collectively contribute to the simple depolymerization of DOC molecular structure. Additionally, long-term RC farming induced legacy effects of soil iron oxides and enhanced chemical protection role leading to reduced DOC biodegradability. These findings suggested that long-term RC farming may reduce the rapid turnover and loss of DOC, providing a negative feedback on climate warming.

Recovery of Soil Microbial Metabolism After Rewetting Depends on Interacting Environmental Conditions and Changes in Functional Groups and Life History Strategies.

Climate change is causing an intensification of soil drying and rewetting events, altering microbial functioning and potentially destabilizing soil organic carbon. After rewetting, changes in microbial community carbon use efficiency (CUE), investment in life history strategies, and fungal to bacterial dominance co-occur. Still, we have yet to generalize what drives these dynamic responses. Here, we collated 123 time series of microbial community growth (G, sum of fungal and bacterial growth, evaluated by leucine and acetate incorporation, respectively) and respiration (R) after rewetting and calculated CUE = G/(G + R). First, we characterized CUE recovery by two metrics: maximum CUE and time to maximum CUE. Second, we translated microbial growth and respiration data into microbial investments in life history strategies (high yield (Y), resource acquisition (A), and stress tolerance (S)). Third, we characterized the temporal change in fungal to bacterial dominance. Finally, the metrics describing the CUE recovery, investment in life history strategies, and fungal to bacterial dominance after rewetting were explained by environmental factors and microbial properties. CUE increased after rewetting as fungal dominance declined, but the maximum CUE was explained by the CUE under moist conditions, rather than specific environmental factors. In contrast, higher soil pH and carbon availability accelerated the decline of microbial investment in stress tolerance and fungal dominance. We conclude that microbial CUE recovery is mostly driven by the shifting microbial community composition and the metabolic capacity of the community, whereas changes in microbial investment in life history strategies and fungal versus bacterial dominance depend on soil pH and carbon availability.

Control of inorganic and organic phosphorus molecules on microbial activity, and the stoichiometry of nutrient cycling in soils in an arid, agricultural ecosystem

Background The dynamics of carbon (C), nitrogen (N), and phosphorus (P) in soils determine their fertility and crop growth in agroecosystems. These dynamics depend on microbial metabolism, which in turn depends on nutrient availability. Farmers typically apply either mineral or organic fertilizers to increase the availability of nutrients in soils. Phosphorus, which usually limits plant growth, is one of the most applied nutrients. Our knowledge is limited regarding how different forms of P impact the ability of microbes in soils to produce the enzymes required to release nutrients, such as C, N and P from different substrates. Methods In this study, we used the arable layer of a calcareous soil obtained from an alfalfa cropland in Cuatro Cienegas, México, to perform an incubation experiment, where five different phosphate molecules were added as treatments substrates: three organic molecules (RNA, adenine monophosphate (AMP) and phytate) and two inorganic molecules (calcium phosphate and ammonium phosphate). Controls did not receive added phosphorus. We measured nutrient dynamics and soil microbial activity after 19 days of incubation. Results Different P molecules affected potential microbial C mineralization (CO2-C) and enzyme activities, specifically in the organic treatments. P remained immobilized in the microbial biomass (Pmic) regardless of the source of P, suggesting that soil microorganisms were limited by phosphorus. Higher mineralization rates in soil amended with organic P compounds depleted dissolved organic carbon and increased nitrification. The C:N:P stoichiometry of the microbial biomass implied a change in the microbial community which affected the carbon use efficiency (CUE), threshold elemental ratio (TER), and homeostasis. Conclusion Different organic and inorganic sources of P affect soil microbial community structure and metabolism. This modifies the dynamics of soil C, N and P. These results highlight the importance of considering the composition of organic matter and phosphate compounds used in agriculture since their impact on the microbial activity of the soil can also affect plant productivity.

Responses of soil microbial metabolism, function and soil quality to long-term addition of organic materials with different carbon sources

Biochar and green manure have been widely applied in agricultural production and are important means to achieve sustainable agriculture. However, there is limited research systematically and comprehensively exploring the response of soil microbiota and the changes in soil metabolomics after the addition of two different carbon source amendments to the soil, and the differential mechanisms of soil metabolomics between them remain unclear. In this study, a long-term field experiment (initiated in 2019) was conducted to investigate the effects of biochar and green manure application on soil nutrients and soil functions driven by soil microbes. Compared to the pure fertilizer treatment, biochar increased soil total carbon by 14.54% to 27.04% and soil available potassium by 4.67% to 27.46%. Ryegrass significantly increased soil available phosphorus and organic matter. Under different fertilization regimes, the ecological niches of soil microbes changed significantly. Network analysis revealed that long-term ryegrass returning reduced the complexity of soil microbial networks. Ryegrass and biochar increased dispersal limitation in fungal assemblages (reaching 93.33% and 86.67%, respectively), with biochar particularly enhancing variable selection in bacterial assemblages (accounting for 53.33%). Variation partitioning analysis based on redundancy analysis indicated that humic substances had the highest explanatory power for microbial community variation, with humic substances explaining 38.49% of bacteria and 52.19% of fungi variation. The ryegrass treatment mainly changed the abundance of carbohydrates (CH), amines (AM), c (AH), and lipids (LP), while the BC treatment mainly altered the abundance of organic acids (AC), amines (AM), and carbohydrates (CH). Meanwhile, both treatments significantly reduced the bisphenol A, one of the soil pollutants. Ryegrass incorporation significantly increased the abundance of genes related to soil C, N, P, and S cycling, especially genes involved in carbon decomposition, while biochar significantly enhanced the abundance of nitrogen fixation genes nifH and Hao in soil. Random forest model results indicated that carbohydrates, alcohols, aromatics (AR), and ester (ES) were the main categories of metabolites in soil influenced by differential microbes, and Finegoldia served as a common important metabolic driving species. In summary, this study reveals the processes of soil function, microbial community succession, and metabolism driven by ryegrass and biochar, providing important insights for optimizing soil management and improving soil quality.Graphical

Straw Returning With No‐Tillage Alleviates Microbial Metabolic Carbon Limitation and Improves Soil Multifunctionality in the Northeast Plain

ABSTRACTStraw returning has been broadly recognized as an agronomic strategy to manage soil quality and has great potential to enhance soil fertility. However, soil microbial metabolism and ecosystem multifunctionality in response to various straw returning strategies in the black soil remain poorly understood. Here, a 5‐year field trial was conducted to discover the effects of four straw management strategies (SIDP, straw incorporation by deep ploughing; SIRT, straw incorporation by rotary tillage; SM, straw mulching with no‐tillage; SR, straw removal with no‐tillage) on the soil biochemical properties in the topsoil (0–20 cm) and subsoil (20–40 cm). SM maintained soil fertility, as evidenced by increases in soil organic carbon, total nitrogen, dissolved organic carbon, and nitrogen, compared with SIDP and SR. Additionally, this strategy promoted microbial biomass. It also stimulated nutrient cycling through increased enzyme activity. Meanwhile, SM alleviated microbial carbon limitation and promoted the shift of soil microbial metabolism from P limitation to N limitation compared to other treatments, especially in the subsoil. This shift was directly influenced by soil available nutrients and microbial properties, as revealed by the partial least‐squares path modeling analysis. Besides, SM promoted soil ecosystem multifunctionality by 29%–37% in both soil layers compared to SIDP and SR. Random forest analysis indicated that soil microbial biomass and activity were the main drivers of this increase in multifunctionality. In conclusion, straw returning with no‐tillage is an optimal straw management strategy for improving the soil biochemical properties, stimulating enzyme activities, alleviating microbial carbon limitation, and increasing ecosystem multifunctionality in the Northeast Plain.

Changes in microbial physiology and carbon-use efficiency upon improving soil habitat conditions in conservation farming systems

The interplay between soil microbial anabolism and metabolism has recently been postulated as an important lever for carbon sequestration in soils. Theoretical considerations suggest that high microbial growth rates and a high carbon-use efficiency (CUE) are associated with increased soil organic carbon (SOC) build-up in arable soils. Nature-oriented conservation agricultural practices are believed to facilitate this microbial-driven process of SOC accrual; a practical validation of this postulation is however missing. Against this background, we evaluated the effect of agricultural management and site-specific soil chemical and physical properties on microbial physiology (i.e., respiration, bacterial and fungal growth rates, and microbial biomass turnover) and CUE by an on-farm comparison of conventional farming, conservation farming and unmanaged reference soil systems (i.e., adjacent field margins) at twenty-one sites across three soil depths. We show that a change in agricultural management towards soil health regeneration has a significant impact on microbial physiology. Bacterial growth, respiration and microbial biomass turnover increased from conventional farming towards conservation farming systems to reference soils. The opposite trend however was found for fungal growth and microbial CUE, with highest values observed in conventional farming systems. This clearly contradicts the prevailing idea that higher microbial CUE in conservation farming systems may be associated with higher SOC contents. Our results further show that soil physical and chemical parameters such as soil pH, texture and dissolved carbon compounds strongly predict microbial CUE. In line with these results, functional pore domains showed specific optima for microbial growth and CUE. For example, a high share of small pore domains hampered fungal growth and reduced microbial CUE but facilitated microbial biomass turnover at the same time. Thus, we suggest that – superimposed upon agricultural management effects – habitat structural conditions and microbial carbon limitation mainly shape microbial physiology and CUE in arable soil systems.

Enzymatic Stoichiometry Reveals the Metabolic Limitations of Soil Microbes under Nitrogen and Phosphorus Addition in Chinese Fir Plantations.

Increasing nitrogen (N) deposition alters the availability of soil nutrients and is likely to intensify phosphorus (P) limitations, especially in P-limited tropical and subtropical forests. Soil microorganisms play vital roles in carbon (C) and nutrient cycling, but it is unclear whether and how much N and P imbalances affect the soil's microbial metabolism and mechanisms of nutrient limitations. In this study, a 3-year field experiment of N and P addition (control (CK), 100 kg N ha-1 yr-1 (N), 50 kg P ha-1 yr-1 (P), and NP) was set up to analyze the extracellular enzyme activities and stoichiometry characteristics of the top mineral soils in Chinese fir plantations with different stand ages (7, 20, and 33 years old). The results showed that the enzyme activities associated with the acquisition of C (β-1,4-glucosidase (BG) and β-d-cellobiohydrolase (CBH)) and P (acid phosphatases (APs)) in the N treatment were significantly higher than those in the CK treatment. Moreover, vector analysis revealed that both the vector's length and angle increased in stands of all ages, which indicated that N addition aggravated microbial C and P limitations. The P and NP treatments both significantly decreased the activity of AP and the enzymes' N:P ratio, thereby alleviating microbial P limitations, as revealed by the reduction in the vector's angle. Stand age was found to promote all enzymatic activities but had no obvious effects on the limitation of microbial metabolism with or without added nutrients in the soils under Chinese fir. Available N, Olsen-P, and pH were the main drivers of microbial metabolic limitations related to C nutrients. These results provide useful data for understanding the change in soil microbial activity in response to environmental changes, and suggest that P fertilization should be considered for management to improve productivity and C sequestration in Chinese fir plantation in the context of increased deposition of N.

Effects of leguminous green manure-crop rotation on soil enzyme activities and stoichiometry

Abstract As a crucial strategy for sustainable agricultural production, green manure-crop rotation can regulate soil nutrient cycling and decrease the reliance on nitrogen fertilizers. However, we still lack a comprehensive understanding of the changes in soil eco-enzyme activities, microbial metabolism, and nutrient limitations caused by leguminous green manure crop rotation. Here, we conducted field experiments of leguminous green manure-crop rotation across China to analyze soil extracellular enzyme activities, specifically β-glucosidase (BG), N-acetyl-β-D-glucosaminidase (NAG), leucine aminopeptidase (LAP), and acid phosphatase (AP). The study revealed that long-term green manure-crop rotation increased carbon and nitrogen accumulation in farmland, with a significant average increase of 20.1% and 36.4% in BG, AP enzyme activities in topsoil, while showing a decrease in ln(NAG+LAP):ln(AP) ratios. The ratios of ln(BG):ln(NAG+LAP) and ln(NAG+LAP):ln(AP) in soil across various regions were typically below 1:1, indicating that soil microbial activity is more constrained by nitrogen and phosphorus nutrients rather than by carbon. Precipitation, temperature, soil total carbon, and total nitrogen were identified as key environmental factors for extracellular enzyme activities and stoichiometric ratios. Our study highlights that the green manure-crop rotation alleviates nitrogen limitation while enhancing phosphorus limitation, and is closely related to the accumulation of total carbon and nitrogen in the soil.

Effects of exogenous copper on microbial metabolic function and carbon use efficiency of Panax notoginseng planting soil.

Soil copper (Cu) pollution is a serious environmental risk in the Panax notoginseng planting area. However, the effect of Cu on soil microbial metabolism and nutrient cycling in this area remains unknown. Therefore, Biolog ECO-plate and enzyme stoichiometry methods were utilized in this study to investigate the impact of exogenous Cu (control: 0 mg·kg-1; Cu100: 100 mg·kg-1; Cu400: 400 mg·kg-1; and Cu600: 600 mg·kg-1) on the metabolic function of soil microbial and nutrient limitation in the P. notoginseng soil. The results indicated that Cu100 significantly increased soil organic carbon (SOC), total phosphorus (TP), soil C:N, microbial biomass carbon (MBC), and microbial biomass nitrogen (MBN) 9.89%, 15.65%, 17.91%, 61.87%, and 90.56% higher than the control, respectively. Moreover, the carbon source utilization ratio of carbohydrates, amino acids, and amphiphilic compounds of Cu100 also increased by 7.16%, 25.47%, and 84.68%, respectively, compared with the control. The activities of β-1,4-glucosidase, cellobiohyrolase, leucine amino peptidase, β-1,4-N-acetylglucosaminidase, and phosphatase significantly decreased with increasing Cu concentration. Soil enzyme stoichiometry showed that all treatments were limited by nitrogen (vector angle < 45°; 19.045-22.081). Cu600 led to the lowest carbon limitation (1.798) and highest carbon use efficiency (CUE:0.267). The PLS-SEM model also showed that MBC, MBN, MBP, and microbial diversity positively affected carbon and nitrogen limitation (0.654 and 0.424). Soil carbon, nitrogen, phosphorus, stoichiometric ratio, MBC, MBN, and MBP positively affected CUE (0.527 and 0.589). The microbial diversity index significantly negatively affected CUE (-1.490). Multiple linear stepwise regression analyses showed that CUE was mainly influenced by MBC, AP, C:P, and LAP. Thus, P. notoginseng soil can benefit soil microbial carbon and nitrogen limitations at low Cu concentrations. Clarifying the metabolic activity and nutritional status of microorganisms under Cu stress can provide some theoretical basis for realizing China's comprehensive and effective management and control policies for environmental risks from metals by 2035.

The effects of postfire regeneration patterns on soil microbial metabolic limitation based on eco-enzyme stoichiometry in the boreal forest of China

Postfire regeneration is essential for maintaining the stability and functionality of forest ecosystems following wildfires. However, it is unclear whether regeneration patterns affect carbon (C), nitrogen (N), or phosphorus (P) limitations on microbial metabolism in the soil. In this study, we investigated the soil extracellular enzyme activities (EEAs) in different forest types regenerated by five patterns (Dahurian larch monocultures, Dahurian larch and birch mixed plantations, Mongolian pine monocultures, Mongolian pine and birch mixed plantations, and naturally regenerated forests). Based on the principles of ecoenzymatic stoichiometry, we elucidated the spatiotemporal variation in energy (C) and nutrient (N or P) limitations on soil microbial metabolism by collecting a total of 135 composite soil samples across three seasons in the five regeneration patterns. The regeneration pattern had a significant effect on the activities of C-, N- and P-acquiring soil extracellular enzymes (P<0.05). The P-acquiring enzyme activity was 2.71 times greater than the C-acquiring enzyme activity and 3.44 times greater than the N-acquiring enzyme activity across all forest types and seasons. The activities of microbial metabolic C-, N-, and P-acquiring enzymes showed similar seasonal dynamic patterns, with the exception of L-leucine aminopeptidase. In all forest types, the activities of enzymes responsible for acquiring C, N, and P were linearly correlated with one another according to the findings from standard major axis regression analysis (P<0.001). The values of the enzymatic vectors were greater than 45°, indicating that P rather than N was the dominant constraint on soil microbial metabolism. Forests with mixed regeneration patterns had greater P limitations than did the corresponding monoculture forests. Soil temperature was the common soil variable affecting the activities of EEAs across seasons, while the contents of soil organic carbon, dissolved carbon, ammonium nitrogen, and nitrate nitrogen were the significant driving factors of EEAs in a single season. However, forest productivity, including tree density, stand basal area, and forest stand volume had a predominant influence on microbial metabolic P limitation. This study suggests a pronounced role of P in soil microbial metabolism within boreal forests regenerated after wildfires.

The desertification process alters soil microbial metabolic limitations and their effects on soil carbon sequestration in a Tibetan alpine steppe

Tibetan alpine steppes are large and sensitive terrestrial carbon (C) reservoirs that are experiencing desertification due to global change and overgrazing, which can lead to stronger resource limitations for both above- and below-ground communities. Soil nutrients, especially nitrogen (N) and phosphorus (P), are the crucial resources for plant growth and microbial metabolism. However, whether both plant and soil microbial communities in the degraded alpine steppes are limited by these soil nutrients remains unclear, which limits our understanding of the mechanisms of desertification and subsequent ecosystem restoration. Here, we evaluated potential nutrient limitations of the plant and soil microbial communities in the alpine steppe across five stages of desertification using stoichiometry-based approaches. Our results showed that soil microbial metabolism was mainly limited by C and P, and the plant N limitation and microbial C limitation were intensified while the microbial P limitation was relieved during desertification. Plant-soil-microbe interactions had significant impacts on the microbial C and P limitations, explaining 72 and 61% of the variation, respectively. Specifically, desertification ultimately affected microbial metabolic limitations by regulating soil pH, soil nutrients, and the plant N limitation. Moreover, the microbial C limitation further reduced microbial C use efficiency (CUE) with desertification, which is detrimental for organic C retention in the degraded soil. Overall, this study revealed that microbial metabolic limitations through plant-microbe interactions were the key drivers affecting soil microbial CUE, and it provided insights that can advance our knowledge of the microbial regulation of nutrient cycles and C sequestration.

Changes in soil microbial metabolic limitations after half-century forest restoration in degraded tropical lands

Due to increasing anthropogenic pressure, over half of the world’s tropical forests are reforested or afforested secondary forests or plantations. The recovery pace and potential of these forests depend largely on soil microbially-mediated biogeochemical cycling. Here we measured soil extracellular enzyme activities and quantified microbial metabolic limitations using a vector analysis in a bare land (BL, representing the original state before restoration), two afforested sites [i.e. a restored secondary forest (MF) and a managed Eucalyptus exserta plantation (EP)] and a nearby undisturbed forest (UF) in south China. Results showed that soil microbial metabolisms were co-limited by carbon (C) and phosphorus (P) across the four forests. Both microbial C and P limitations were higher in BL than UF. Microbial C limitation significantly reduced after restoration only in MF when compared to BL, but it was still higher than that in UF. Interestingly, microbial P limitation significantly enhanced after restoration in both EP and MF when compared to BL, and it did not differ between the two restored forests. Structural equation modeling (SEM) showed that microbial C limitation was primarily attributed to microbial C use efficiency, while microbial P limitation was co-driven by plant biomass, microbial C use efficiency and soil P availability. These findings suggest microbial C limitation could be gradually recovered after forest restoration in southern China, which would facilitate soil organic carbon accumulation. However, the enhanced microbial P limitation after forest restoration underlines the necessity to develop optimal P management in these restored forests.

Barren to green in a single application: Revitalizing brownfield soil with simulated root exudates

Barren, metal-contaminated soils lack plants and root exudate inputs, exhibit low microbial abundance and functioning, and often require soil revitalization to revegetate. While the effects of simulated root exudates (SRE) have been investigated in uncontaminated, vegetated soils, their potential for remediating post-industrial barren, contaminated soils has not been examined or leveraged. We asked whether priming brownfield soils with a laboratory-prepared SRE solution stimulates native soil microbial metabolism and functioning and how long the effects last. Moreover, we compared a cost-effective single SRE addition to repeated SRE additions. We collected soils from a metal-contaminated, abandoned industrial rail yard (barren and vegetated sites) and a vegetated agricultural reference site, established microcosms, and treated the soils with either a single or repeated SRE addition/s. By day 30, SRE-enriched barren, brownfield soils showed significantly higher soil respiration rates than the untreated control soils. Phosphatase activities were significantly higher even 210 days after a single SRE addition. Plants were introduced 282 days after the single SRE addition. The average shoot height (16 ± 0.3 cm) and total plant biomass (0.5 ± 0.02 g) of plants grown in single addition SRE enriched barren soil were significantly higher than the controls (9 ± 0.9 cm and 0.3 ± 0.02 g, respectively). The increased soil microbial functioning and productivity indicate that a single SRE application holds promise as a field-ready technology to revitalize barren, poorly functioning brownfield soils. SRE application may also be a pragmatic and innovative approach to enable successful phytoremediation and re-greening of industrial barrens.

Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China

The effects of wind erosion, one of the crucial causes of soil desertification in the world, on the terrestrial ecosystem are well known. However, ecosystem responses regarding soil microbial carbon metabolism to sand deposition caused by wind erosion, a crucial driver of biogeochemical cycles, remain largely unclear. In this study, we collected soil samples from typical aeolian deposition farmland in the Songnen Plain of China to evaluate the effects of sand deposition on soil properties, microbial communities, and carbon metabolism function. We also determined the reads number of carbon metabolism-related genes by high-throughput sequencing technologies and evaluated the association between sand deposition and them. The results showed that long-term sand deposition resulted in soil infertile, roughness, and dryness. The impacts of sand deposition on topsoil were more severe than on deep soil. The diversity of soil microbial communities was significantly reduced due to sand deposition. The relative abundances of Nitrobacteraceae, Burkholderiaceae, and Rhodanobacteraceae belonging to α-Proteobacteria significantly decreased, while the relative abundances of Streptomycetaceae and Geodermatophilaceae belonging to Actinobacteria increased. The results of the metagenomic analysis showed that the gene abundances of carbohydrate metabolism and carbohydrate-activity enzyme (GH and CBM) significantly decreased with the increase of sand deposition amount. The changes in soil microbial community structure and carbon metabolism decreased soil carbon emissions and carbon cycling in aeolian deposition farmland, which may be the essential reasons for land degradation in aeolian deposition farmland.

The Combination of Buchloe dactyloides Engelm and Biochar Promotes the Remediation of Soil Contaminated with Polycyclic Aromatic Hydrocarbons.

Polycyclic aromatic hydrocarbons (PAHs) cause serious stress to biological health and the soil environment as persistent pollutants. Despite the wide use of biochar in promoting soil improvement, the mechanism of biochar removing soil PAHs through rhizosphere effect in the process of phytoremediation remain uncertain. In this study, the regulation of soil niche and microbial degradation strategies under plants and biochar were explored by analyzing the effects of plants and biochar on microbial community composition, soil metabolism and enzyme activity in the process of PAH degradation. The combination of plants and biochar significantly increased the removal of phenanthrene (6.10%), pyrene (11.50%), benzo[a]pyrene (106.02%) and PAHs (27.10%) when compared with natural attenuation, and significantly increased the removal of benzo[a]pyrene (34.51%) and PAHs (5.96%) when compared with phytoremediation. Compared with phytoremediation, the combination of plants and biochar significantly increased soil nutrient availability, enhanced soil enzyme activity (urease and catalase), improved soil microbial carbon metabolism and amino acid metabolism, thereby benefiting microbial resistance to PAH stress. In addition, the activity of soil enzymes (dehydrogenase, polyphenol oxidase and laccase) and the expression of genes involved in the degradation and microorganisms (streptomyces, curvularia, mortierella and acremonium) were up-regulated through the combined action of plants and biochar. In view of the aforementioned results, the combined application of plants and biochar can enhance the degradation of PAHs and alleviate the stress of PAH on soil microorganisms.

Unveiling the regulatory mechanism of poly-γ-glutamic acid on soil characteristics under drought stress through integrated metagenomics and metabolomics analysis.

It is of utmost importance to understand the characteristics and regulatory mechanisms of soil in order to optimize soil management and enhance crop yield. Poly-γ-glutamic acid (γ-PGA), a stress-resistant amino acid polymer, plays a crucial role in plant drought stress resistance. However, little is known about the effects of γ-PGA on soil characteristics during drought treatments. In this study, the effects of different forms of γ-PGA on soil texture and basic physical and chemical properties under short-term drought conditions were investigated. Furthermore, the impact of γ-PGA on the microbial community and metabolic function of maize was analyzed. Under drought conditions, the introduction of γ-PGA into the soil resulted in notable improvements in the mechanical composition ratio and infiltration capacity of the soil. Concurrently, this led to a reduction in soil bulk density and improved soil organic matter content and fertility. Additionally, metagenomic analysis revealed that under drought conditions, the incorporation of γ-PGA into the soil enhanced the soil microbiota structure. This shift led to the predominance of bacteria that are crucial for carbon, nitrogen, and phosphorus cycles in the soil. Metabolomics analysis revealed that under drought treatment, γ-PGA affected soil metabolic patterns, with a particular focus on alterations in amino acid and vitamin metabolism pathways. Correlation analysis between the soil metagenome and metabolites showed that microorganisms played a significant role in metabolite accumulation. These results demonstrated that γ-PGA could improve soil characteristics under drought conditions and play an important role in soil microorganisms and microbial metabolism, providing further insights into the changes in soil characteristics under drought conditions.

Polymers from Plant Oils Linked by Siloxane Bonds for Programmed Depolymerization.

The increased production of plastics is leading to the accumulation of plastic waste and depletion of limited fossil fuel resources. In this context, we report a strategy to create polymers that can undergo controlled depolymerization by linking renewable feedstocks with siloxane bonds. α,ω-Diesters and α,ω-diols containing siloxane bonds were synthesized from an alkenoic ester derived from castor oil and then polymerized with varied monomers, including related biobased monomers. In addition, cyclic monomers derived from this alkenoic ester and hydrosiloxanes were prepared and cyclized to form a 26-membered macrolactone containing a siloxane unit. Sequential ring-opening polymerization of this macrolactone and lactide afforded an ABA triblock copolymer. This set of polymers containing siloxanes underwent programmed depolymerization into monomers in protic solvents or with hexamethyldisiloxane and an acid catalyst. Monomers afforded by the depolymerization of polyesters containing siloxane linkages were repolymerized to demonstrate circularity in select polymers. Evaluation of the environmental stability of these polymers toward enzymatic degradation showed that they undergo enzymatic hydrolysis by a fungal cutinase from Fusarium solani. Evaluation of soil microbial metabolism of monomers selectively labeled with 13C revealed differential metabolism of the main chain and side chain organic groups by soil microbes.