Soil Arbuscular Mycorrhizal Fungi Community Research Articles

Common soil history is more important than plant history for arbuscular mycorrhizal community assembly in an experimental grassland diversity gradient

The relationship between biodiversity and ecosystem functioning strengthens with ecosystem age. However, the interplay between the plant diversity - ecosystem functioning relationship and Glomeromycotinian arbuscular mycorrhizal fungi (AMF) community assembly has not yet been scrutinized in this context, despite AMF’s role in plant survival and niche exploration. We study the development of AMF communities by disentangling soil- and plant-driven effects from calendar year effects. Within a long-term grassland biodiversity experiment, the pre-existing plant communities of varying plant diversity were re-established as split plots with combinations of common plant and soil histories: split plots with neither common plant nor soil history, with only soil but no plant history, and with both common plant and soil history. We found that bulk soil AMF communities were primarily shaped by common soil history, and additional common plant history had little effect. Further, the steepness of AMF diversity and plant diversity relationship did not strengthen over time, but AMF community evenness increased with common history. Specialisation of AMF towards plant species was low throughout, giving no indication of AMF communities specialising or diversifying over time. The potential of bulk soil AMF as mediators of variation in plant and microbial biomass over time and hence as drivers of biodiversity and ecosystem relationships was low. Our results suggest that soil processes may be key for the build-up of plant community-specific mycorrhizal communities with likely feedback effects on ecosystem productivity, but the plant-available mycorrhizal pool in bulk soil itself does not explain the strengthening of biodiversity and ecosystem relationships over time.

Characteristics of the Rhizospheric AMF Community and Nutrient Contents of the Dominant Grasses in Four Microhabitats of the Subalpine Zone in Northwestern Yunnan, China

At the southeastern periphery of the Tibetan Plateau, the subalpine ecosystem hosts grasses as some of the most substantial species. However, the community and function of arbuscular mycorrhizal fungi (AMF) around the rhizospheres of grasses in the subalpine zone are still poorly understood. In the present study, 28 soils and 11 species of dominant grasses collected from four microhabitats (shrubland, grassland, woodland, and forest) in the subalpine zone of northwestern Yunnan, China, were used to investigate the AMF community by Illumina MiSeq high-throughput sequencing technology as well as nutrient contents. Among the four microhabitats, the maximum soil nutrient levels around the rhizospheres of grasses were observed in woodland. The nitrogen, phosphorus, and potassium concentrations in Dactylis glomerata shoots were significantly higher than those in the other 10 grass species. The AMF diversity of grassland in summer was substantially greater than that of the other three microhabitats (p < 0.05). Discrepancies were observed within a given plant species across microhabitats; for example, in summer, the nitrogen concentration in the shoot of Iris tectorum in woodland was significantly higher than that in both forest and shrubland (p < 0.05). A total of eight genera were detected in the AMF communities, which were dominated by Glomus, with a relative abundance of 45.4–94.4% in summer and 60.5–84.3% in winter. Moreover, the abundance of Glomus was significantly positively correlated with the content of alkali-hydrolyzable nitrogen in soil and nitrogen in grasses according to the Mantel test. As a critical nutrient element in soil, nitrogen is beneficial for plant growth. Thus, these results provide a better understanding of the resilience of soil AMF community and the ecological adaptability of grasses in the subalpine ecosystems of northwestern Yunnan.

Optimum planting density of Amorpha fruticosa promotes the recovery of understory vegetation and the arbuscular mycorrhizal fungal community in plantations in arid coal mining areas

AbstractEstablishment of plantations may be a useful means of vegetation reconstruction in coal mining areas, especially in fragile environments. However, the influence of shrub planting on the relationship between understory vegetation and soil microorganisms remains poorly understood. Here, we describe a field experiment in which the relationships between understory vegetation and soil microorganisms under different planting densities of Amorpha fruticosa L. (A. fruticosa) were investigated. Compared with areas allowed to recover naturally, shrub planting changed the community and increased the biomass of understory vegetation and soil microbes, especially of arbuscular mycorrhizal fungi (AMF). Planting density was also a key factor that influenced understory vegetation and the soil AMF community and biomass. The maximum diversity of understory vegetation and the AMF community occurred at an intermediate density of introduced shrubs, which was considered to be the optimum density of A. fruticosa. The major soil nutrient cycles that influence understory vegetation and the AMF community were also investigated. An optimum density of introduced shrubs was important in the ecological reconstruction of vegetation in the coal mining area. There may also have been an optimum relationship between the understory vegetation and soil microorganisms especially with AMF in the experimental conditions.

Year-round dynamics of arbuscular mycorrhizal fungi communities in the roots and surrounding soils of Cryptomeria japonica

Arbuscular mycorrhizal fungi (AMF) live simultaneously inside and outside of host plant roots for a functional mycorrhizal symbiosis. Still, the year-round dynamics and relationships between soil properties and AMF communities of trees in forest ecosystems remain unclear. We collected paired root and soil samples of the same Cryptomeria japonica trees at two forest sites (five trees at each site) every 2 months over a year. Total DNA was extracted from roots and soil separately and soil physicochemical properties were measured. With Illumina’s next-generation amplicon sequencing targeting the small subunit of fungal ribosomal DNA, we clarified seasonal dynamics of soil properties and AMF communities. Soil pH and total phosphorus showed significant seasonality while total carbon, nitrogen, and C/N did not. Only pH was a good predictor of the composition and dynamics of the AMF community. The total AMF community (roots + soil) showed significant seasonality because of variation from May to September. Root and soil AMF communities were steady year-round, however, with similar species richness but contained significantly different AMF assemblages in any sampling month. Despite the weak seasonality in the communities, the top two dominant OTUs showed significant but different shifts between roots and soils across seasons with strong antagonistic relationships. In conclusion, few dominant AMF taxa are dynamically shifting between the roots and soils of C. japonica to respond to seasonal and phenological variations in their microhabitats. AMF inhabiting forest ecosystems may have high environmental plasticity to sustain a functional symbiosis regardless of seasonal variations that occur in the soil.

Natural grass coverage enriches arbuscular mycorrhizal fungal communities in subtropical citrus orchards through the regulation of Glomus on a regional scale

Arbuscular mycorrhizal (AM) fungi are ubiquitous soil fungi in orchard ecosystem, conferring a diverse array of benefits to citrus plants. However, how natural grass coverage, a common phenomenon in citrus orchards in southern China, shifts AM fungal communities in subtropical citrus orchards is far from being understood, especially on a regional scale, which impedes the understanding of the indigenous AM fungal adaptations. In this study, natural grass coverage rate, soil chemical properties, and soil AM fungal community in 80 sampling sites spanning 179, 700 km2 area in subtropical citrus orchards were investigated. The result of 18S rRNA gene high-throughput sequencing revealed that a total of eight AM fungal genera were identified and Glomus (90.15 %) was dominant genus in the community in citrus orchards. Natural grass coverage significantly increased soil organic matter (SOM), soil available phosphorus, and AM fungal alpha diversity, especially Glomus. Variation partitioning analysis revealed that grass coverage rate explained more variation in AM fungal alpha diversity than SOM. All the contrasting AM fungal species between different grass coverage rates and all the core AM fungal species belonged to Glomus. Null model analysis revealed that determinism played a slightly larger role in the assembly process of AM fungal communities than stochasticity with a distance-decay relationship. Moreover, natural grass coverage increased the relative importance of stochasticity in the community assembly. Taken together, these results suggest that maintaining natural grass coverage (naturally growing grass) is an effective nature-based solution for enriching AM fungal communities, which is essential for the sustainability of citrus production.

Earthworms facilitated pepper (Capsicum annuum L.) growth via enhancing the population and function of arbuscular mycorrhizal fungi in a low-density polyethylene-contaminated soil

Microplastics (MPs) produced by the decomposition of plastics exist persistently, interfering with soil fertility and plant nutrition. Both arbuscular mycorrhizal (AM) fungi and earthworms are beneficial in terrestrial ecosystems, but their interactions under MPs contamination are unclear so far. Here, the influences of inoculating earthworms (Eisenia fetida) on indigenous AM fungi and pepper (Capsicum annuum L.) growth were investigated in a vegetable soil treated with 0.1% low-density polyethylene (LDPE), while the specific interactions of earthworm and AM fungus (Funneliformis caledonium) under LDPE contamination were further resolved in another experiment using sterilized soil. Inoculation of earthworms shifted soil AM fungal community structure, replacing the predominant genus Glomus by Paraglomus, and increased the abundance, diversity (i.e., Shannon) index, and root colonization rate of AM fungi by 108, 34.6 and 45.0%, respectively. Earthworms also significantly decreased soil pH, and significantly increased soil alkaline phosphatase (ALP) activity, shoot biomass and fruit yield of pepper by 394, 82.8 and 188%, respectively. In the sterilized soil, both E. fetida and F. caledonium improved pepper growth, while the latter noticeably increased phosphorus (P) translocation efficiency from root to shoot, and the combination induced the highest soil ALP activity and pepper fruit yield. Furthermore, the significantly interactive effects between earthworm and AM fungus were observed in soil pH and available P concentration, as well as in shoot P concentration and fruit yield of pepper. This study revealed the interaction between earthworms and AM fungi under MPs contamination conditions for the first time, indicating that earthworms could facilitate vegetable growth via enhancing the propagation and P-promoting function of AM fungi in LDPE-contaminated soils.Graphical

The Addition of a High Concentration of Phosphorus Reduces the Diversity of Arbuscular Mycorrhizal Fungi in Temperate Agroecosystems

Phosphorus (P) is an essential macronutrient crucial for both plant growth and crop production, playing a pivotal role in agriculture since the early 20th century. The symbiotic relationship between AMF and plants serves as a classic illustration. These fungi play a regulatory role in the growth and development of plants, especially in facilitating the absorption of P and carbon molecules by plants. While there has been a growing body of research on the community assembly of arbuscular mycorrhizal fungi (AMF) in recent decades, our knowledge of the processes governing the coexistence of these AMF communities influenced by P in agroecosystems remains limited. To investigate the impact of various P fertilizers on AMF communities in temperate agroecosystems, this study was conducted using soils sourced from wheat–maize rotation farmland at Henan Agricultural University Yuanyang Base. With the Illumina MiSeq high-throughput sequencing technique, we systematically examined the taxonomic composition of soil AMF at the Yuanyang Base of Henan Agricultural University in a wheat–maize rotation agricultural field. Our primary objective was to unravel the mechanisms behind AMF community assembly and stability under varying P gradient fertilization conditions. Nonmetric Multidimensional Scaling (NMDS) analysis revealed significant differences among AMF communities in field soil subjected to various treatments (p < 0.05). A torus translations test demonstrated positive associations with the three treatments in 36 out of the 51 examined AMF operational taxonomic units (OTUs), making up 70.59% (p < 0.05) of the results. Furthermore, 37.84% (14/37) of the OTUs displayed preferences for the low P concentration treatment, while 34.29% (12/35) and 32.26% (10/31) favored medium and high P concentrations, respectively. An analysis of the Normalized Stochasticity Ratio (NST) and Checkerboard Score (C-score) indicated that in temperate agroecosystems, deterministic processes predominantly governed AMF in all treatment groups, with high P conditions exerting a stronger influence than low or medium P conditions. This study underscores the profound impact of long-term P fertilizer application on AMF community structures within temperate agricultural systems employing wheat–maize rotation. Additionally, it highlights the dominant role played by deterministic processes in shaping the assembly of AMF communities in these temperate agricultural systems that use P fertilizers. These findings emphasize the need for balanced nutrient management, particularly concerning P, to ensure the stability of AMF communities.

Effects of Annual Crop Rotation and Fallow on Soil AMF Community and Aggregate Stability

To investigate the effects of crop rotation and fallow on the community composition of arbuscular mycorrhizal fungi (AMF) and the stability of soil aggregates, AMF community and aggregates were measured using Illumina MiSeq high-throughput sequencing and wet screening methods in red soil of sloping farmland. The AMF community and its relationship with soil factors and aggregate stability were studied under the four treatments of vetch rotation corn (V-C), pea rotation corn (P-C), winter fallow corn (F-C), and annual fallow (F-F). The results showed that the aggregate content of >2 mm, R0.25, and MWD in the F-F, V-C, and P-C treatments were significantly higher than those in F-C (P<0.05), and the aggregate content of <0.25 mm was significantly lower than that of F-C (P<0.05). The ACE, Chao1, and Shannon indexes of the F-F treatment were 29.56%, 35.78%, and 45.55% higher than those of the F-C treatment, respectively. Glomus was the dominant genus of AMF communities under all treatments, whereas Scutellospora showed a significant difference among the treatments (P<0.05). PCoA analysis showed that PC1 and PC2 together explained 29.99% and 22.40% of the difference in the AMF community composition, respectively. The correlation analysis showed that there was a significant negative correlation between Scutellospora and alkaline nitrogen (AN) and organic matter (SOM) (P<0.05), a significant positive correlation between Scutellospora and available potassium (AK) (P<0.05), and a significant positive correlation between Glomus and alkaline nitrogen (P<0.05). RDA analysis showed that AMF diversity (Shannon index) and Scutellospora were significantly and positively correlated with aggregate content >2 mm and 2-1 mm, respectively (P<0.05). Therefore, annual fallow and vetch rotation corn were conducive to improving the stability of soil aggregates and changing the composition of the AMF community. The research results provide a theoretical basis and reference for the annual rotation system to improve soil quality and implement a reasonable crop rotation and fallow pattern in southern China.

Ecotype and fungal endophyte status differentially affect soil arbuscular mycorrhizal community of the native grass Bromus auleticus

In wild native grasses, the colonization of arbuscular mycorrhizal fungi (AMF) is higher in Epichloë-infected plants (E+) compared to Epichloë-free plants (E−). To explore the correlation between the host ecotype, Epichloë association, and the soil AMF community, a common garden experiment was conducted. To achieve this, the soil AMF community of two Bromus auleticus ecotypes, El Palmar (EP) and La Pampa (LP), with either E+ or E−endophyte status, was analyzed using high throughput sequencing. The total mycorrhizal colonization of E+ plants from both EP and LP ecotypes showed significantly higher values (178.68% and 132.34% respectively) compared to E−plants, regardless of the ecotype. Alpha and Beta diversity analysis revealed significant differences in AMF richness and composition between the El Palmar (EP) and La Pampa (LP) ecotypes. However, no differences were observed in the soil AMF communities between E+ and E−plants. In conclusion, this study demonstrates that Epichloë symbiosis and host ecotype have distinct effects on various aspects of the AMF-Bromus auleticus association.

Arbuscular Mycorrhizae Fungi Diversity in the Root–Rhizosphere–Soil of Tetraena mongolica, Sarcozygium xanthoxylon, and Nitraria tangutorum Bobr in Western Ordos, China

Arbuscular mycorrhizal fungi (AMF) are considered to be an essential indicator of ecosystem biodiversity and can increase a plant’s ability to withstand arid conditions. Despite the obvious significance of AMF in the root and rhizosphere system, little is known about how the AMF variety varies between the soil and roots of endangered plants and how this varies depending on habitats in dry and semiarid regions. This study aimed to address this research gap by investigating the characteristics and diversity of AMF colonization in Zygophyllaceae. Using Illumina MiSeq high-throughput sequencing, indigenous AMF in the roots and rhizosphere soil of three endangered plants (Tetraena mongolica, Sarcozygium xanthoxylon, and Nitraria tangutorum Bobr) were investigated. The three threatened plants had different AMF populations in their root and rhizosphere soils, according to a hierarchical clustering analysis. AMF communities in rhizosphere soil were more sensitive to LDA than root AMF communities based on linear discriminant analysis effect size (LEfSe). Glomus, Septoglomus, and Rhizophagus were seen to function as dominant fungi as the soil and root AMF populations carried out their various tasks in the soil and roots as a cohesive collective. Distance-based redundancy analysis (db-RDA) showed that pH, total phosphorus, and accessible potassium were closely associated with AMF communities. The pH of the soil appears to be an important factor in determining AMF community stability. These findings can serve as a guide for the use of AM fungus in the rehabilitation of agricultural land in arid regions. In summary, our work contributed new knowledge for the scientific preservation of these endangered plant species and for the further investigation of the symbiotic link between AMF and endangered plant species.

Paired Root-Soil Samples and Metabarcoding Reveal Taxon-Based Colonization Strategies in Arbuscular Mycorrhizal Fungi Communities in Japanese Cedar and Cypress Stands.

Arbuscular mycorrhizal fungi (AMF) in the roots and soil surrounding their hosts are typically independently investigated and little is known of the relationships between the communities of the two compartments. We simultaneously collected root and surrounding soil samples from Cryptomeria japonica (Cj) and Chamaecyparis obtusa (Co) at three environmentally different sites. Based on molecular and morphological analyses, we characterized their associated AMF communities. Cj was more densely colonized than Co and that root colonization intensity was significantly correlated with soil AMF diversity. The communities comprised 15 AMF genera dominated by Glomus and Paraglomus and 1443 operational taxonomic units (OTUs) of which 1067 and 1170 were in roots and soil, respectively. AMF communities were significantly different among sites, and the root AMF communities were significantly different from those of soil at each site. The root and soil AMF communities responded differently to soil pH. At the genus level, Glomus and Acaulospora were abundant in roots while Paraglomus and Redeckera were abundant in soil. Our findings suggest that AMF colonizing roots are protected from environmental stresses in soil. However, the root-soil-abundant taxa have adapted to both environments and represent a model AMF symbiont. This evidence of strategic exploitation of the rhizosphere by AMF supports prior hypotheses and provides insights into community ecology.

Grazing does not influence soil arbuscular mycorrhizal fungal diversity, but increases their interaction complexity with plants in dry grasslands on the Tibetan Plateau

Animal grazing substantially influences soil arbuscular mycorrhizal fungi (AMF) and plants, however, its effects on soil AMF-plant interactions are still not clearly defined. This is particularly concerned in dry grasslands where plant growths are more dependent on soil AMF to tolerate environmental stresses. In these regions, animal grazing has been rapidly increasing and degrading grasslands, e.g. the Tibetan Plateau. To reveal the AMF-plant interactions and their responses to grazing, we investigated the soil AMF-plant interaction and AMF community assembly processes in paired fields of grazed and non-grazed grasslands using Illumina sequencing on the Tibetan Plateau. Our results demonstrated that grazing did not influence the soil AMF diversity and community structure, but substantially altered AMF-plant interaction and AMF community assembly processes. Network analysis demonstrated that grazing enhanced AMF-plant interaction complexity, indicated by the increased network connectance, average clustering coefficient and importance of hub plants in grazed grasslands. Additionally, grazing substantially increased the stochasticity of AMF community assembly in steppe and desert soils by reducing the deterministic effects of plant richness and enhancing AMF-plant interaction. Soil AMF richness positively correlated with plant evenness in non-grazed grasslands (P < 0.05), but such correlations diminished in grazed grasslands. Our findings indicate that AMF-plant interaction and AMF community assembly are more sensitive than AMF diversity and community structure to grazing. Therefore, animal grazing could profoundly interrupt ecosystem functions driven by soil AMF-plant interaction before the diversity loss.

Diversity characteristics of arbuscular mycorrhizal fungi communities in the soil along successional altitudes of Helan Mountain, arid, and semi-arid regions of China

Arbuscular mycorrhizal fungi (AMF) perform a vital role in terrestrial ecosystems. To investigate the diversity of AMF communities on the western slope of Helan Mountain at different altitudes and their influence factors, high-throughput sequencing was used to study the structure and diversity of soil AMF communities under different environments and their interrelationships between AMF and environmental factors. The results revealed that there were significant differences (p < 0.05) in the physical and chemical properties of the soil along the different altitudes. A total of 1,145 OTUs were obtained by high-throughput sequencing, belonging to 1 phylum, 4 class, 6 orders, 13 families, 18 genera and 135 species, with the dominant genus being Glomus, which accounted for 75.27% of the relative abundance of the community. Soil AMF community structure was shown to be variable at the generic level according to NMDS analysis. Correlation analysis showed that soil pH, water content (WC), organic matter (OM), available K, available P and N were significantly correlated with AMF community diversity and species abundance (p < 0.05, p < 0.01). Based on redundancy analysis (RDA) and Monte Carlo test results, soil pH, WC and OM had highly significant effects (p < 0.01) on AMF community diversity and species abundance. This study investigates the relationship between AMF community structure and diversity and soil physicochemical properties at different elevations on the western slope of Helan Mountain, which is of great significance to the study of the Helan Mountain ecosystem.

Variations of arbuscular mycorrhizal fungi following succession stages in a tropical lowland rainforest ecosystem of South China

IntroductionThe grasslands in the Nature Reserve of Ganshenling, in the south of Hainan Island, were first formed after deforestation disturbance before a natural restoration of shrubs and secondary forests. However, the stages of grassland and shrubs in some parts of Ganshenling regions could not be naturally restored to secondary forests. In addition, the forest form of the secondary forest after 40 years (40a) of succession was similar to that of the secondary forest of 60 years (60a). However, it was not known whether the microorganisms recovered to the level of the secondary forest of 60a. Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that can improve the nitrogen and phosphorus absorption of plants and play a key role in secondary forest succession. An understanding of the essential role of soil AMF in secondary forest succession of tropical rainforest in Ganshenling regions is still limited.MethodsTherefore, the soil of 0–10 cm was collected with the help of a 5-point sampling method in grassland, shrubs, and second tropical lowland rainforest of 40a and 60a. We studied community changes in AMF with the succession and explored the impacts of soil physicochemical properties on soil AMF.ResultsOur findings were as follows: (1) Different successional stages showed divergent effects on soil AMF communities. (2) After 40a recovery, the alpha-diversity indices of AMF recovered to the level of secondary forest of 60a, but the similarity of soil AMF communities only recovered to 25.3%. (3) Species richness of common species, rare species, and all the species of AMF showed a significantly positive correlation with soil nitrogen. (4) OTU10; OTU6, OTU9, and OTU141; OTU3 and OTU38; and OTU2, OTU15, OTU23, and OTU197 were significantly unique AMF for grasslands, shrubs, and secondary forests of 40a and 60a, respectively. (5) The phylogenetic tree and the heatmap of AMF showed that the OTUs in grasslands and shrubs were in contrast to the OTUs in secondary forests of 40a and 60a.DiscussionWe concluded that the succession of a secondary forest after deforestation disturbance was probably limited by its AMF community.

Cover Crops Modulate the Response of Arbuscular Mycorrhizal Fungi to Water Supply: A Field Study in Corn.

Cover crops (CCs) were found to improve soil health by increasing plant diversity and ground cover. They may also improve water supply for cash crops by reducing evaporation and increasing soil water storage capacity. However, their influence on plant-associated microbial communities, including symbiotic arbuscular mycorrhizal fungi (AMF), is less well understood. In a corn field trial, we studied the response of AMF to a four-species winter CC, relative to a no-CC control, as well as to two contrasting water supply levels (i.e., drought and irrigated). We measured AMF colonization of corn roots and used Illumina MiSeq sequencing to study the composition and diversity of soil AMF communities at two depths (i.e., 0-10 and 10-20 cm). In this trial, AMF colonization was high (61-97%), and soil AMF communities were represented by 249 amplicon sequence variants (ASVs) belonging to 5 genera and 33 virtual taxa. Glomus, followed by Claroideoglomus and Diversispora (class Glomeromycetes), were the dominant genera. Our results showed interacting effects between CC treatments and water supply levels for most of the measured variables. The percentage of AMF colonization, arbuscules, and vesicles tended to be lower in irrigated than drought sites, with significant differences detected only under no-CC. Similarly, soil AMF phylogenetic composition was affected by water supply only in the no-CC treatment. Changes in the abundance of individual virtual taxa also showed strong interacting effects between CCs, irrigation, and sometimes soil depth, although CC effects were clearer than irrigation effects. An exception to these interactions was soil AMF evenness, which was higher in CC than no-CC, and higher under drought than irrigation. Soil AMF richness was not affected by the applied treatments. Our results suggest that CCs can affect the structure of soil AMF communities and modulate their response to water availability levels, although soil heterogeneity could influence the final outcome.

Effect of Coal Mining on Soil Microorganisms from Stipa krylovii Rhizosphere in Typical Grassland.

The environmental changes caused by coal mining activities caused disturbances to the plant, soil, and microbial health in the mining area. Arbuscular mycorrhizal fungi (AMF) play an important role in the ecological restoration of mining areas. However, it is less understood how soil fungal communities with multiple functional groups respond to coal mining, and the quantitative impact and risk of mining disturbance. Therefore, in this study, the effect of coal mining on soil microorganisms' composition and diversity were analyzed near the edge of an opencast coal-mine dump in the Shengli mining area, Xilingol League, Inner Mongolia. The response strategy of soil fungi to coal mining and the stability of arbuscular mycorrhizal fungi (AMF) in the soil fungal community were determined. Our results showed that coal mining affected AMF and soil fungi in areas within 900 m from the coal mine. The abundance of endophytes increased with the distance between sampling sites and the mine dump, whereas the abundance of saprotroph decreased with the distance between sampling sites and the mine dump. Saprotroph was the dominant functional flora near the mining area. The nodes percentage of Septoglomus and Claroideoglomus and AMF phylogenetic diversity near the mining area were highest. AMF responded to the mining disturbance via the variety and evolution strategy of flora. Furthermore, AMF and soil fungal communities were significantly correlated with edaphic properties and parameters. Soil available phosphorus (AP) was the main influencer of soil AMF and fungal communities. These findings evaluated the risk range of coal mining on AMF and soil fungal communities and elucidated the microbial response strategy to mining disturbance.

Effects of partial substitution of chemical fertilizer with organic fertilizer on arbuscular mycorrhizal fungal community of Mangifera indica

Nutrient enrichment caused by fertilization would reduce the diversity of arbuscular mycorrhizal fungi (AMF). To explore whether partial substitution of chemical fertilizer with organic fertilizer would alleviate the negative effects of nutrient enrichment on AMF, we conducted a two-year mango (Mangifera indica) field experiment to examine the effects of different fertilization regimes on AMF communities in roots and rhizospheric soils by using high-throughput sequencing. The treatments included chemical-only fertilization (control), and two kinds of organic fertilizer (commercial organic fertilizer and bio-organic fertilizer) with replacing 12% (low) and 38% (high) chemical fertilizer. The results showed that under equivalent nutrient input, partial substitution of chemical fertilizer with organic fertilizer had positive effects on the yield and quality of mango. The application of organic fertilizer could effectively increase AMF richness. AMF diversity was significantly positively correlated with some indices of fruit quality. Compared with chemical-only fertilization, high replacement ratio of organic fertilizer could significantly change root AMF community, but did not affect AMF community in the rhizospheric soil. Bio-organic fertilizer could enrich more AMF species and form a more complex AMF co-occurrence network than commercial organic fertilizer. In all, replacing chemical fertilizer with a high proportion of organic fertilizer could improve the yield and quality of mango while maintain AMF richness. The changes of AMF community caused by organic fertilizer substitution pre-ferably occurred in roots rather than soils.

Synergistic effects of diazotrophs and arbuscular mycorrhizal fungi on soil biological nitrogen fixation after three decades of fertilization

AbstractBiological nitrogen (N) fixation (BNF) via diazotrophs is an important ecological process for the conversion of atmospheric N to biologically available N. Although soil diazotrophs play a dominant role in BNF and arbuscular mycorrhizal fungi (AMF) serve as helpers to favor BNF, the response of soil BNF and diazotrophic communities to different long‐term fertilizations and the role of AMF in diazotrophs‐driven BNF are poorly understood. Herein, a 33‐year fertilization experiment in a wheat–maize intercropping system was conducted to investigate the changes in soil BNF rates, diazotrophic and AMF communities, and their interactions after long‐term representative fertilization (chemical fertilizer, cow manure, wheat straw, and green manure). We found a remarkable increase in soil BNF rates after more than three decades of fertilization compared with nonfertilized soil, and the green manure treatment rendered the highest enhancement. The functionality strengthening was mainly associated with the increase in the absolute abundance of diazotrophs and AMF and the relative abundance of the key ecological cluster of Module #0 (gained from the co‐occurrence network of diazotrophic and AMF species) with dominant diazotrophs such as Skermanella and Azospirillum. Furthermore, although the positive correlations between diazotrophs and AMF were reduced under long‐term organic fertilization regimes, green manuring could reverse the decline within Module #0, and this had a positive relationship with the BNF rate. This study suggests that long‐term fertilization could promote N fixation and select specific groups of N fixers and their helpers in certain areas. Our work provides solid evidence that N fixation and certain groups of diazotrophic and AMF taxa and their interspecies relationship will be largely favored after the fertilized strategy of green manure.

Characteristics of the soil arbuscular mycorrhizal fungal community along succession stages in tropical forest and its driving factors

Arbuscular mycorrhizal fungi play an important role in mediating plant-soil interactions across succession stages. However, AMF community dynamics which about the change of community composition and member activity remain unclear. To complete the gap knowledge about microbial community dynamics during restoration succession, soil AMF community composition was studied within a tropical forest ecosystem in the Ganshiling nature reserve using high throughput sequencing methods. The results revealed that soil AMF communities characteristics about speices diversity, species composition and microbial correlation network showed significant differences between shrubland (SC) and secondary forest ecosystems, but the same differences were not found between 40-year recovery secondary forest (SF40) and 60-year recovery secondary forest (SF60). Plant community dynamics were the key factor for regulating soil AMF communities among succession stages. An important biotic factor explaining variance in AMF community composition was root biomass. The correlation network analysis showed that although the nodes were similar among succession stages, the complexity of networks was significant higher in SF40 than in SC and SF60, suggesting that AMF communities were more active in SF40, which verified the hypothesis of intermediate disturbance hypothesis. This study provides new insights into AMF community dynamics and their driving factors across succession stages, as well as expanding knowledge of the ecological value of AMF for tropical forest restoration processes.

Effects of nitrogen addition and seasonal change on arbuscular mycorrhizal fungi community diversity in a poplar plantation

Arbuscular mycorrhizal (AM) fungi play a crucial role in carbon (C), nitrogen (N), and phosphorous (P) biogeochemical cycling. Therefore, it is essential to determine the seasonal responses of the AM fungal community to N addition to understanding better the ecological processes against a background of intensified N deposition. Based on an ongoing field simulation experiment with five N addition levels (0, 5, 10, 15, and 30 gN·m−2·a−1) in a 5-year-old poplar plantation at Dongtai Forest Farm in Yancheng, Jiangsu province, eastern China, soil physicochemical properties, the root colonization rate, and the rhizosphere soil AM fungal community diversity and composition in four seasons (summer, autumn, winter, and spring) were investigated. Meanwhile, the relationships between the characteristics of the AM fungal community and soil environmental factors were analyzed. High-throughput sequencing showed that the dominant genera in the poplar plantation were Glomus (average relative abundance 87.52%), Diversispora (9.62%), and Acaulospora (1.85%). The addition of N significantly increased the root colonization rate in spring. The diversity of the AM fungal community (Chao and Shannon indexes) was primarily affected by seasonal change rather than N addition, and the diversity in summer was significantly lower than in the other three seasons. Redundancy analysis showed that soil temperature, available P, total P, and pH significantly affected the structure of the AM fungal community. It can be concluded N addition primarily influenced the root colonization rate, whereas seasonal change had a notable effect on the AM fungal community diversity. Although seasonal change and N addition greatly influenced the composition, seasonal change exerted a more substantial effect than N addition. These results will improve our understanding of the underground ecological processes in poplar plantation ecosystems.