This study presents an improved in-flight strutting system for centrifuge modelling. Based on the centrifuge model test data, the mobilizable strength design (MSD) method was revised. The modified MSD method extends to the prediction of three-dimensional (3D) deformations in retaining walls due to excavation activities. Initially, an improved in-flight excavation tool used in centrifuge tests was employed to investigate the impacts of staged excavation on the characteristics of wall displacement and ground settlement in two-dimensional (2D) braced excavation. Subsequently, 2D and 3D finite element analyses, calibrated against the centrifuge test data and considering the small strain effect, were conducted to assess the performance of wall displacement, ground settlement, and movement of the underground soil induced by the braced excavation. Moreover, this research proposes a straightforward predictive model based on the modified MSD, specifically for calculating the deformation along the length of retaining walls in 3D braced excavations. The insights and the modified MSD method given in this study may facilitate the design of foundation pit projects, especially when the 3D effects are an essential detail to be considered in these projects.