Cattle Research Articles

Genome-wide association studies and functional annotation of pre-weaning calf mortality and reproductive traits in Nellore cattle from experimental selection lines

BackgroundReproductive efficiency is crucial for the long-term economic sustainability of beef cattle production. Pregnancy loss and stillbirth are complex reproductive traits that do not yet have their genomic background fully understood, especially in zebu breeds (Bos taurus indicus). Hence, this study aimed to perform a genome-wide association study (GWAS) and functional annotation for conception success (CS), pregnancy loss (PL), stillbirth (SB), and pre-weaning calf mortality (PWM) in Nellore cattle. In this study, 3,728 cows with 17,094 reproductive records and 11,785 calves were evaluated. A total of 3,351 genotyped animals and 383,739 SNP markers were considered for GWAS analyses. SNP effects were estimated using the weighted single-step GWAS (WssGWAS), which considered two iterations. The top ten genomic windows with the highest contribution to the additive genetic variance of the traits were selected for gene annotation. Candidate genes were then analyzed for Gene Ontology terms (GO) and metabolic pathways.ResultsThe top ten genomic windows that explained the largest proportion of the direct additive genetic variance () for CS, PL, SB, and PWM accounted for 17.03% (overlapping with 79 genes), 16.76% (57 genes), 11.71% (73 genes), and 12.03% (65 genes) of the total , respectively. For CS, significant GO terms included Somitogenesis (GO:0001756), Somite Development (GO:0061053), and Chromosome Segregation (GO:0007059). Considering PL, the processes annotated were the Regulation of Hormone Secretion (GO:0046883), and Hormone Transport (GO:0009914), along with the Glucagon Signaling Pathway (bta04922). Embryonic Development (GO:0045995), and Cerebellum Development (GO:0021549) were the main biological processes found in the gene enrichment analysis for SB. For PWM, the Regulation of Glucose metabolic processes (GO:0010906), Zinc Ion Homeostasis (GO:0055069), Lactation (GO:0007595), and Regulation of Insulin Secretion (GO:0050796) were the most significant GO terms observed.ConclusionsThese findings provide valuable information on genomic regions, candidate genes, biological processes, and metabolic pathways that may significantly influence the expression of complex reproductive traits in Nellore cattle, offering potential contributions to breeding strategies and future genomic selection strategies.

Facile Synthesis and Surface Characterization of ZnO-Fe3O4 Metal Nanoparticles Composite Using Cow Urine from the Bos Taurus Breed and Its Applications

Facile Synthesis and Surface Characterization of ZnO-Fe3O4 Metal Nanoparticles Composite Using Cow Urine from the Bos Taurus Breed and Its Applications

Replace part of regenerative rice silage feed with whole cottonseed enhances growth performance and nutrient digestibility via regulating gH/IGF axis in beef cattle

This work was designed to assess the impacts of whole cottonseed (WCs) on growth performance, nutrient digestion, GH /IGF-1 axis, and meat quality in beef cattle. Twenty-four healthy male simmental cattle (18 months old and 370.5 ± 12.5 kg) were arbitrarily classified into two groups (n=12 per group): Control group (without WCs) and WCs replaced group (part of regenerative rice silage was replaced with WCs). The dry matter intake (DMI) was declined(P < 0.01), while the average daily gain (ADG) was increased(P < 0.05), therefore the feed conversion ratio (FCR) was lower (P < 0.05) in WCs replaced group. Beef cattle consuming WCs had a higher digestibility of total gastrointestinal nutrients (P < 0.01 or P < 0.05). The growth hormone receptor (GHR), insulin-like growth factor 1 (IGF-1), and insulin-like growth factor 1 receptor (IGF-1R) mRNA amounts were all enhanced (P < 0.05) in liver, longissimus dorsi muscle, and semitendinosus muscle of beef cattle after feeding WCs relative to control group. The mRNA amounts of phosphoinositide 3-kinase (PI3K), protein kinase B (Akt), mammalian target of rapamycin (mTOR), and ribosomal protein S6 kinase beta-1 (S6K1) and the protein phosphorylation levels of Akt、mTOR, and S6K1 were all markedly enhanced (P < 0.05 or P < 0.01) in liver, longissimus dorsi muscle, and semitendinosus muscle for WCs replacement. The shear force and cooking loss values having somewhat raised(P < 0.05) for WCs replacement. Altogether, WCs improves the growth performance and nutrient digestibility via regulating GH/IGF axis in beef cattle, and has negative effects on meat quality.

A Closed-Loop Economy in the Meat Industry for Generating Alternative Energy from Biogas Plants

This study deals with the concept of a closed-loop economy in the meat industry through the use of animal by-products in biogas plants for electricity generation processes. The purpose of the study was to identify the volume of by-products from the slaughter of cattle and pigs, how the by-products are managed, and the efficiency of their use in biogas plants for electricity production processes. The analyses used data from the Central Statistical Office, the Chief Veterinary Inspectorate, and information obtained from the Polish Agency for Enterprise Development. Studies from the literature on closed-loop economies and bioeconomies were also a valuable source of information. Based on case studies, this paper also presents examples of a closed-loop economy in meat companies. In the area of pork, poultry, and beef livestock production, the analysis covered the years 2004–2022, while in the area of the production and use of meat industry by-products, the data came from 2017–2022. The study shows that reducing the production of waste in the meat industry and the reuse and recycling of waste are important parts of a closed-loop economy. In meat companies, waste from slaughtering animals can be properly managed, either by processing it into animal feed or by using it in biogas plants to generate electricity or heat. Taking into account the number of by-products from cattle and pig slaughter in the country, biogas plants could produce approximately 95,232 MW of electricity per year, which constitutes approximately 4.3% of the energy intensity of the meat industry in Poland.

Characterizing risk factors for infection of Mycobacterium bovis between wild pigs and domestic cattle from an outbreak response — California, 1961–1967

In the United States (US), a national control program from bovine tuberculosis (bTB) has been successful at greatly reducing the incidence of Mycobacterium bovis infection in domestic cattle and mitigating exposure to humans. However, experience in many countries, including the US, has demonstrated that eradication of animal tuberculosis (TB) from wildlife can complicate disease control programs. Wild pigs may serve as an important maintenance species for TB, contributing to outbreaks in cattle and hampering disease control programs. In the US, on the Hawaiian island of Molokai, wild pigs facilitated TB transmission, but risk factors contributing to infection of TB were not characterized. To fill this gap, we retrospectively analyzed data from an outbreak of M. bovis in wild pigs and domestic cattle in California during 1961–1967. Using generalized linear models we investigated demographic risk factors (age and sex) for TB infection in wild pigs as well as the association among wild pig and domestic cattle prevalence. Our models demonstrated a predictive accuracy of 87.8% and suggest adult female wild pigs have significantly lower odds of being TB positive (odds ratio (OR) = 0.41, p value = 0.022). Furthermore, our models identified a possible positive association between male wild pigs and TB status (OR = 2.37, p value = 0.055). We also found evidence of differences in geographic risks. Our findings contribute to the existing literature describing risk factors of M. bovis infection in wild pigs and can be used to support targeted surveillance activities in wild pigs.

Real-time monitoring of cattle (Bos taurus) tissue using a novel point-of-care (POC) polymerase spiral reaction (PSR) colorimetric assay

Adulteration of cattle meat with other species raises critical public health concerns, as existing detection methods lack sensitivity, specificity and practicality. We address this gap by introducing a novel Point-of-Care (POC) polymerase spiral reaction (PSR) assay. This rapid, on-site tool enables highly specific and sensitive identification of cattle tissue, even in resource-limited settings. This innovation paves the way for improved food safety and consumer protection. The cattle-specific PSR assay employs COX3 gene-targeting primers and a chromogenic indicator triad (HNB, Malachite Green and Phenol Red) for rapid visual detection. Cross-amplification absence with other meats (buffalo, sheep, goat and pig) and concordance with SYBR Green I and agarose gel electrophoresis confirm specificity. PSR at 62 °C for 60minutes exhibits a 100 fg detection limit and identifies 0.1% meat admixing. Efficacy is demonstrated across a diverse range of cattle meat samples, blind samples and processed cattle muscle samples. Compatibility with both conventional (snap chill) and commercial DNA extraction kits enables on-site analysis within 90minutes, facilitating rapid field sample analysis.

Characterization of circulating miRNA in cow milk and colostrum.

MicroRNAs (miRNAs) are short RNA molecules, typically 21-25 nucleotides long, synthesized within eukaryotic cells. They play a crucial role in coordinating complex gene expression regulatory networks. The miRNAs are involved in post-transcriptional regulation, either by degrading target mRNA or suppressing their transcription, thereby influencing protein translation. Also, the variation of miRNAs expression in different milk components suggests diverse metabolic pathways. Additionally, characteristics of farm production systems exert a noticeable influence on miRNAs profiles, shaping the functional properties of bovine milk. In this study, milk and colostrum samples of Holstein cows (Bos taurus) were collected for RNA extraction and sequencing. Sequencing data underwent quality controls, and short non-coding RNA reads were analyzed to identify and compare miRNAs profiles. The sequencing runs yielded 73,567,661 and 44,283,978 reads for milk and colostrum samples, respectively. Following trimming, 8,335,860 and 7,778,212 reads for milk and colostrum samples were retained. A total of 4.3% milk and 37.8% colostrum reads were identified as miRNAs. Overall, 157 miRNAs were common to milk and colostrum, 2 were unique to milk, and 90 were unique to colostrum. After applying a minimal cutoff of 100 reads per miRNA, 146 miRNAs were considered as expressed. In milk, bta-miR-101 was unique; in colostrum, bta-miR-18a, bta-miR-262-3p, bta-miR-130a, and bta-miR-224 were unique; and 141 miRNAs were common to colostrum and milk. Chromosome distribution of these miRNAs varied, with higher representation on autosome 19 and sexual chromosome X. Overall, colostrum contained a greater number of miRNAs, although specific miRNAs such as miR-11-988b, miR-140, and miR-146b were more abundant in milk. Conversely, miRNAs such as miR-7a-5p, let-7e, and miR-16a were more prevalent in colostrum. Validation through qPCR confirmed the expression levels of selected miRNAs from RNA sequencing, establishing concordance between the methods. Analysis of gene regulation by specific miRNAs identified key miRNAs (e.g., miR-223, miR-181a, and miR-155) involved in regulating various genes. Distinct miRNAs profiles in milk and colostrum suggest various functionalities, potentially influencing calf development and immune responses. The study unveils a comprehensive map of miRNAs in milk and colostrum and highlights their potential roles in regulating biological processes, as they play an essential role in calf development, disease resistance, and metabolism.

Identification of biological pathways and putative candidate genes for residual feed intake in a tropically adapted beef cattle breed by plasma proteome analysis

This study identified potential biomarkers for feed efficiency by blood plasma proteome analysis of a tropically adapted beef cattle breed. Two experimental groups were selected based on residual feed intake (RFI). The proteome was investigated by LC-MS/MS in a data-dependent acquisition mode. After quality control, 123 differentially abundant proteins (DAPs) were identified between the two experimental groups. Among DAPs with the highest absolute log-fold change values, the PRDM2, KRT5, UGGT1, DENND5B, B2M, SLC44A2, SLC7A2, PTPRC, and FETUB were highlighted as potential biomarkers because of their functions that may contribute to RFI. Furthermore, functional enrichment analysis revealed several biological processes, molecular functions and pathways that contributes to RFI, such as cell signaling, cellular responses to stimuli, immune system, calcium, hormones, metabolism and functions of proteins, lipids and carbohydrates. Protein-protein interaction analysis identified 32 and 11 DAPs as important nodes based on their interactions in the high- and low-RFI groups, respectively. This study represents the first comprehensive profiling of the blood plasma proteome of a tropically adapted beef cattle breed and provides valuable insights into the potential roles of these DAPs in key biological processes and pathways, contributing to our understanding of the mechanisms underlying feed efficiency in tropically adapted beef cattle. SignificanceLC-MS/MS analysis was performed to investigate changes in the blood plasma proteome associated with residual feed intake (RFI) in a tropically adapted beef cattle breed (Bos taurus taurus). Some putative biomarkers were identified to distinguish the high-RFI to low-RFI animals, based on their log-fold change value or on their protein-protein interaction network, which provide helpful sources in developing novel selection strategies for breeding programs. Our findings also revealed valuable insights into the metabolic pathways and biological processes that contribute to RFI in beef cattle, such as those closely linked to cell signaling, cellular responses to stimuli, immune system, calcium, hormones, metabolism and functions of proteins, lipids and carbohydrates.

Losing a Herd Mate: Negative Effects on Milk Yield and Udder Health Indicators in Loose-Housed Dairy Cattle.

Feral cattle (Bos taurus) live in socially stable herds. Due to farm management practices, intensively managed dairy cows experience frequent regrouping, which can disrupt affiliative bonds and induce social stress. This study examines how changes in herd composition affect milk yield and udder health traits in resident dairy cows exposed to the withdrawal of herd members or the introduction of new individuals. Milk yield, electrical conductivity, and blood presence in milk were measured in 798 cows using precision dairy sensors over 9 years. Milk yield decreased significantly (p < 0.001) one day after the removal of familiar herd members, while introducing cows had no effect. A higher number of cows being withdrawn (up to 10) was associated with reduced milk yield (p < 0.001), elevated milk electrical conductivity (p = 0.01), and an increased prevalence of blood presence in milk (p = 0.01), which can indicate potential udder health issues linked to social stress. Holstein Friesian, primiparous, and first-lactation-stage cows were more affected than Czech Simental and multiparous cows later in lactation. These findings underscore the influence of social stability on dairy cow welfare and productivity, emphasising the need for strategies to mitigate stress when herd changes are necessary.

Efficient small fragment sequencing of human, cattle, and bison miRNA, small RNA, or csRNA-seq libraries using AVITI

BackgroundNext-Generation Sequencing (NGS) catalyzed breakthroughs across various scientific domains. Illumina’s sequencing by synthesis method has long been central to NGS, but new sequencing methods like Element Biosciences’ AVITI technology are emerging. AVITI is reported to offer improved signal-to-noise ratios and cost reductions. However, its reliance on rolling circle amplification, which can be affected by polymer size, raises questions about its effectiveness in sequencing small RNAs (sRNAs) such as microRNAs (miRNAs), small nucleolar RNAs (snoRNAs), and many others. These sRNAs are crucial regulators of gene expression and involved in various biological processes. Additionally, capturing capped small RNAs (csRNA-seq) is a powerful method for mapping active or “nascent” RNA polymerase II transcription initiation in tissues and clinical samples.ResultsHere, we report a new protocol for seamlessly sequencing short fragments on the AVITI and demonstrate that AVITI and Illumina sequencing technologies equivalently capture human, cattle (Bos taurus), and bison (Bison bison) sRNA or csRNA sequencing libraries, increasing confidence in both sequencing approaches. Additionally, analysis of generated nascent transcription start site (TSS) data for cattle and bison revealed inaccuracies in their current genome annotations, underscoring the potential and necessity to translate small and nascent RNA sequencing methodologies to livestock.ConclusionsOur accelerated and optimized protocol bridges the advantages of AVITI sequencing with critical methods that rely on sequencing short fragments. This advance bolsters the utility of AVITI technology alongside traditional Illumina platforms, offering new opportunities for NGS applications.

The dynamics of Bovini exploitation strategies on the Central Plains of China from the Middle Neolithic to the Bronze Age

Bos and Bubalus are important Bovini resources worldwide and were widely exploited on the Central Plains of China during the Neolithic and Bronze Ages. However, distinguishing between Bos and Bubalus remains were challenging due to their similar morphological traits, which leaves the interaction between them poorly understood. This study is the first to combine Zooarchaeology by Mass Spectrometry (ZooMS) with zooarchaeological methods to identify Bos and Bubalus in China at the Tuchengwang (5600–4300 cal. BP), and Pingliangtai (4200–3900 cal. BP) sites. This was accompanied by carbon and nitrogen isotope analyses of bone collagen to discuss their diets on the Central Plains. Our findings indicate that these exploitation strategies are dynamic. Aurochs (Bos primigenius) and water buffaloes (Bubalus mepistopheles) were exploited before the introduction of cattle (Bos taurus), and this exploitation continued into the Bronze Age. The exploitation of local wild Bovini resources may have influenced the adoption of cattle during the End Neolithic. By this time, cattle predominated in Bovini remains at most sites, but the adoption of cattle was not a phenomenon of unison, and their exploitation strategies became more diverse, especially in ritual practices. Wild water buffaloes had evolved into privilege goods by the Bronze Age, especially during the late Shang. This study contributes to a deeper understanding of human-animal-environment relationships between Bovini and ancient people.

Comprehensive Study of Sperm Proteins and Metabolites Potentially Associated with Higher Fertility of Zebu Cattle (Bos indicus) in Tropical Areas.

Crossbreeding of zebu cattle (Bos indicus) with European breeds (Bos taurus) producing crossbred cattle was performed to overcome the low growth rates and milk production of indigenous tropical cattle breeds. However, zebu cattle fertility is higher than those of crossbred cattle and European breeds under warm conditions. Combination study of proteomics and metabolomics toward Malaysian indigenous breed Kedah × Kelantan-KK (B. indicus) and crossbreed Mafriwal-M (B. taurus × B. indicus) to understand physiological reasons for higher thermotolerance and fertility in Zebu cattle sperm. 161 regulated metabolites and 96 regulated proteins in KK and M (p < 0.05) showed more efficient carbohydrate and energy metabolism, higher integrity of the DNA and plasma membrane, a lower level of reactive oxygen species, and higher levels of phospholipids, which confirmed higher sperm plasma membrane integrity in KK. A stronger antioxidant system and lower polyunsaturated fatty acids help KK sperm cope with oxidative stress under warm conditions. The higher abundance of flagella structural proteins in KK provides a stronger structure that supports sperm motility. Abnormality of flagella, plasma membrane disruption, and DNA fragmentation were higher in M. These findings provide selective molecular markers for developing high-producing and more thermotolerant cattle breeds in tropical areas (197 words).

Behavioral red flags for optimizing castration-induced acute pain diagnosis in cattle

Unesp-Botucatu Cattle Pain Scale (UCAPS) is widely used in experimental settings, however the high number of UCAPS behaviors might represent a barrier to its implementation in the farm's or hospital's routine. We aimed to identify a smaller combination of UCAPS behaviors that could be used as behavioral red flags for optimizing the acute pain diagnosis in cattle. We hypothesize that a specific set of UCAPS behaviors might be used as behavioral red flags for pain. This would represent a quick and simple pain evaluation and might optimize the acute pain assessment in large-scale systems. Data from two previous studies regarding UCAPS assessments before (pain free condition) and after (painful condition) surgical castration of 59 male cattle was used. We fitted a decision tree, resulting in a logic with two behaviors that we used as behavioral red flags. The logic adapted from the decision tree considered the painful diagnosis when the Activity was scored 2. When Activity was scored less than 2, but Locomotion was scored 1 or 2, the diagnosis was also considered positive for pain. When Activity was below 2 and Locomotion was 0, the diagnosis was considered free pain. Behavioral red flags had an area under the curve of 95.95 % for predicting UCAPS diagnosis and 94.13 % for predicting overall pain free and painful conditions. In conclusion, behaviors in the decision tree logic can work as behavioral red flags for optimizing the acute pain diagnosis in cattle, as a quick assessment in large-scale systems.

Effects of amount of lactose in milk replacer on gastrointestinal function of dairy calves

The objective of this study was to evaluate the effects of feeding milk replacer (MR) at different lactose amount while keeping osmolality constant on gastrointestinal function, blood parameters, and inflammation-related mRNA expression in the livers of dairy calves. Fifteen Holstein bull calves were assigned to one of three dietary treatments differing in MR lactose content (L: 38 %, M: 41 %, and H: 46 %). Feeding of the test diets was started at 1 day of age and gradually increased to a maximum feeding rate at 20 days of age (L: 1.16 kg/d, M: 1.21 kg/d, and H: 1.26 kg/d DM). Under these conditions, the lactose dosages for the treatments were 441 g/d, 496 g/d, and 580 g/d, respectively. The MR were prepared to ensure isocaloric and iso-osmotic (451 mOsm/kg) conditions. Fecal scores were recorded daily, and at 14 and 28 days of age, blood and breath samples were collected before and after MR feeding. In addition, feces and urine were collected for 2 consecutive days. Then, the calves were slaughtered to evaluate intestinal permeability and liver mRNA expression. The permeability in the duodenum and ileum was lower in H and M than in L; the permeability in the jejunum was also lower in H than in L. The hepatic mRNA expressions of toll-like receptor-2, IL-1β, and tumor-necrosis factor-α were lower in H and M than L. Nitrogen retention was higher in H than in L, and linear and quadratic increasing trends were observed in tissue ratio of gastrointestinal tract with the increase in lactose amount. Postprandial increase in plasma glucose concentration was smaller and postprandial increase in TG concentration was higher in H than in L. Fecal properties, digestibility, and breath hydrogen concentrations were not affected by treatment. These results indicate that feeding high-lactose MR may increase gastrointestinal weight and decrease permeability in the small intestine of calves.

Tailoring Genomic Selection for Bos taurus indicus: A Comprehensive Review of SNP Arrays and Reference Genomes

Tailoring Genomic Selection for Bos taurus indicus: A Comprehensive Review of SNP Arrays and Reference Genomes

West African cattle share non-random heterozygosity-rich region islands enriched on adaptation-related genes despite their different origins

MethodsUp to 237 individuals belonging to 10 different taurine (Bos taurus), zebu (B. indicus), and taurine × zebu sanga cattle populations sampled in Benin, Burkina Faso, and Niger were typed using the BovineHD BeadChip of Illumina to ascertain the patterns and importance of heterozygosity-rich regions (HRRs) in West African cattle. To account for among-population gene flow, individuals were further classified into three groups (Qtaurine, Qzebu, and admixed) according to maximum likelihood estimates of individual ancestries (q^) obtained using the program Admixture v1.23.Results and discussionThe 967 HRRs identified on 27 out of 29 bovine chromosomes in 231 cattle individuals were further summarized into 103 HRR islands, covering 40.7 Mb of the bovine genome. Only HRR islands identified in at least 10% of the animals typed or 10% of the individuals classified according to cattle type or admixture class were considered relevant to characterize the West African cattle genomic background. Only one and three HRR islands were considered taurine- and zebu-specific, respectively. Most (14) relevant HRR islands identified were present in cattle individuals despite the cattle type or admixture class into which they were classified (waHRR), suggesting that HRR can give advantages for adaptation to harsh environments. A total of 202 potential candidate genes were identified on the 14 waHRR islands. Most of them belonged to gene families coding zinc finger, protocadherin, adhesion G protein-coupled receptors, solute carrier, and arachidonate lipoxygenase proteins, involved in immune response, with a putative role in adaptation. Furthermore, waHRRs were also enriched on 18 and 11 different genes coding olfactory receptors and pregnancy-associated glycoproteins, respectively, giving additional support to the suggested importance of the HRR islands identified for the adaptive ability of West African cattle. Our research identified new genomic areas that can be targeted for further research in cattle adaptive ability.

Cocktail vaccine for the management of Hyalomma anatolicum and Rhipicephalus microplus.

Globally, ticks rank second only to mosquitoes as vectors of deadly pathogens affecting humans and first in transmitting animal pathogens, presenting a significant challenge to human wellness and sustainability of livestock-based industries. Traditional tick control via chemical acaricides impacts on the environment and has led to the emergence of multi-acaricide-resistant tick populations. Use of immunoprophylactic, along with other components of integrated tick management, holds the potential to mitigate tick infestations in a sustainable manner. To control multi-species tick infestations, the concept of a cocktail vaccine comprising of more than one antigens has emerged as a viable solution due to the inconsistent efficacy of single antigen-based immunization protocol. In this study, a dual antigen cocktail immunization protocol was developed targeting ferritin2 (FER2) and tropomyosin (TPM) proteins, which are associated with ticks' essential cellular and physiological functions, like blood iron homeostasis and muscle contractions. Dual gene silencing of FER2 and TPM genes in Hyalomma anatolicum resulted in a 75.3% reduction in infested ticks, a 95.4% decrease in egg masses, and a complete loss of egg hatching when compared to control ticks. Microscopically, an altered ovarian cellular architecture, marked by vacuolation and reduced nucleus-to-cytoplasmic ratio were noted in the gene knocked down ticks. An immunization with cocktails of 300 µg dose of each protein, rHaFER2 and rHaTPM was standardized in a rat model and was used to immunize cross-bred (Bos indicus x B. taurus) male cattle with Montanide ISA 50V2 adjuvant on days 0, 28, and 49. A significant (p < 0.001) IgG and IgG2 antibody response was observed in the immunized animals with high IgG levels sustained until day 119 post-primary immunization, showing a 4.1-fold increase over the pre-immunization period. The animals were challenged with larvae and adults of H. anatolicum and larvae of Rhipicephalus microplus. Immunization with the cocktail antigen resulted an efficacy of 70% and 76% against H. anatolicum larvae and adults, respectively, and 54% against R. microplus infestations. Compared to single-antigen immunization, the immunization with cocktail antigens demonstrated higher protection against R. microplus and H. anatolicum ticks. The results advance the development of cocktail vaccines to control multiple tick species.

Linkage Disequilibrium Decay in Selected Cattle Breeds.

Linkage disequilibrium (LD) maps are fundamental tools for exploring the genetic basis of traits of interest in any species. Quantifying LD patterns in cattle breeds has been made possible due to the availability of huge quantities of SNPs through modern sequencing technology. The present research aims to determine and compare linkage disequilibrium levels at different distances on the genome of Sistani domestic cattle and subspecies of Bos taurus and Bos indicus based on genome SNP data. A total of 60 Bos indicus Sahiwal (dairy) and Nellore (beef), Bos taurus Hereford (beef) and Holstein (dairy), and Sistani cattle were sampled and genotyped using Illumina Bovine HD 770 k chip. To ensure the caliber of the sequencing, 10 samples (genetically sequenced cattle) were randomly chosen among all breeds represented. LD was evaluated at distances of 1-50 Kb, 50-100 Kb, 100-500 Kb, and 0.5-1 Mb, and average r2 values for all autosomes were calculated within distance classes. For all breeds, the average r2 was over 0.2 at distances less than 100 Kb, while for Sistani, Nellore, and Sahiwal, the average r2 was above 0.2 between 100 and 500 Kb. Furthermore, for all breeds, the average r2 exceeding 0.3 was noted at distances smaller than 50 Kb, while this amount for Holstein and Hereford was observed at distances between 50 and 100 Kb. In various breeds, greater changes in LD levels were observed (at <10 Kb distance). In this study, the Sistani breed showed LD decay patterns similar to indicine cattle (Nellore and Sahiwal), which may be due to the geographic proximity of the Sistan and Baluchestan province to Pakistan, the origin of indicine breeds (they may have had genetic or kinship relationships over a long historical period), or due to ascertainment bias in the SNP chips used.

Transcriptomic and Metabolomics Joint Analyses Reveal the Influence of Gene and Metabolite Expression in Blood on the Lactation Performance of Dual-Purpose Cattle (Bos taurus).

Blood is an important component for maintaining animal lives and synthesizing sugars, lipids, and proteins in organs. Revealing the relationship between genes and metabolite expression and milk somatic cell count (SCC), milk fat percentage, milk protein percentage, and lactose percentage in blood is helpful for understanding the molecular regulation mechanism of milk formation. Therefore, we separated the buffy coat and plasma from the blood of Xinjiang Brown cattle (XJBC) and Chinese Simmental cattle (CSC), which exhibit high and low SCC/milk fat percentage/milk protein percentage/lactose percentages, respectively. The expression of genes in blood and the metabolites in plasma was detected via RNA-Seq and LC-MS/MS, respectively. Based on the weighted gene coexpression network analysis (WGCNA) and functional enrichment analysis of differentially expressed genes (DEGs), we further found that the expression of genes in the blood mainly affected the SCC and milk fat percentage. Immune or inflammatory-response-related pathways were involved in the regulation of SCC, milk fat percentage, milk protein percentage, and lactose percentage. The joint analysis of the metabolome and transcriptome further indicated that, in blood, the metabolism pathways of purine, glutathione, glycerophospholipid, glycine, arginine, and proline are also associated with SCC, while lipid metabolism and amino-acid-related metabolism pathways are associated with milk fat percentage and milk protein percentage, respectively. Finally, related SCC, milk fat percentage, and milk protein percentage DEGs and DEMs were mainly identified in the blood.

Mitogenome diversity and evolution of Bos indicus cattle in India

Mitochondrial DNA has been widely utilized as a valuable tool for studying the evolutionary and demographic history both within and between different livestock speciesover the past three decades. Evaluation of the evolutionary history, population structure and genetic diversity is imperative for their productivity, ecosystem services, and breeding and conservation strategies for effective management. The present study included complete mitogenome of 78 cattle, out of which 33 samples belonged to 6 Bos indicus breeds of India. Mitogenome diversity of zebu cattle within population (π- nucleotide, haplotype diversity) was estimated using DnaSP v6 software and between populations (FST ratio, AMOVA analysis) was estimated using Arlequin 3.5.2.2. Ladakhi breed showed maximum (π = 0.00645) while Gir (π = 0.00042) and Tharparkar (π = 0.00053) showed minimum diversity. The diversity between the breeds of Indian cattle was 16.34 %. There were 13 and 14 haplotypes in each of I1 and I2 halogroups respectively suggesting that the divergence of Bos indicus haplotypes likely occurred within the Indian subcontinent. The Bos indicus and Bos taurus cattle lineages separated approximately 0.75 million years ago. The divergence pattern observed in zebu cattle highlighted the probability of a distinct ancestor and supported notion of independent divergence of Bos indicus.