Skeletal Rearrangement Research Articles

Modification of cobalt bis(dicarbollide) ions with nitrile groups on carbon atoms: a unique low-temperature skeletal rearrangement due to the specific electron-donor character of CN substitution.

Herein, we report on the synthesis and stereochemistry of mono- and isomeric dinitrile derivatives of [(1,2-C2B9H11)2-3,3'-Co]- ions. The shape and electronic properties of CN groups can apparently surmount the strain associated with the substitution of two vicinal carbon positions. Owing to electron donation to the cage, this results in a substituent-induced rearrangement of one of the carbon atoms to the upper pentagonal ring. The molecular structure of this isomer was confirmed using sc-XRD and DFT chemical computations.

A Crystalline Mesoionic Diazasilole Featuring Low-Valent Silicon.

A 1,4,2-diazasilole containing a low-valent silicon atom has been synthesized employing a bulky imino N-heterocyclic carbene ligand. This molecular structure is characterized by a mesoionic C2N2Si five-membered ring, notable for its delocalized π electrons, intrinsic charge-separated zwitterionic properties, and a distinctly nucleophilic silicon center, culminating in 6π aromaticity. This compound manifests either mesoionic silylene or silylone characteristics upon coordination with transition metals. Demonstrating extraordinary versatility, this compound engages in diverse reactions such as coordination with iron or iridium, oxidation by S8, intramolecular ring saturation under the coordination influence of iridium, silicon atom transfer facilitated by Ph2Se2, ring contraction induced by Ph2Te2, and skeletal rearrangement triggered by Et3N•HCl. These reactions culminate in the formation of a variety of unprecedented silicon-based heterocycles, which are typically formidable to achieve using conventional methods. This study unveils previously unexplored facets of low-valent 1,4,2-diazasilole, positioning it as a promising foundational building block for future innovations in unique silicon compounds.

A Crystalline Mesoionic Diazasilole Featuring Low‐Valent Silicon

A 1,4,2‐diazasilole containing a low‐valent silicon atom has been synthesized employing a bulky imino N‐heterocyclic carbene ligand. This molecular structure is characterized by a mesoionic C2N2Si five‐membered ring, notable for its delocalized π electrons, intrinsic charge‐separated zwitterionic properties, and a distinctly nucleophilic silicon center, culminating in 6π aromaticity. This compound manifests either mesoionic silylene or silylone characteristics upon coordination with transition metals. Demonstrating extraordinary versatility, this compound engages in diverse reactions such as coordination with iron or iridium, oxidation by S8, intramolecular ring saturation under the coordination influence of iridium, silicon atom transfer facilitated by Ph2Se2, ring contraction induced by Ph2Te2, and skeletal rearrangement triggered by Et3N•HCl. These reactions culminate in the formation of a variety of unprecedented silicon‐based heterocycles, which are typically formidable to achieve using conventional methods. This study unveils previously unexplored facets of low‐valent 1,4,2‐diazasilole, positioning it as a promising foundational building block for future innovations in unique silicon compounds.

Strain-Release-Driven Electrochemical Skeletal Rearrangement of Non-Biased Alkyl Cyclopropanes/Butanes.

Capitalizing the inherent strain energy within molecules, strain-release-driven reactions have been widely employed in organic synthesis. Small cycloalkanes like cyclopropanes and cyclobutanes, with their moderate ring strain, typically require dense functionalization to induce bias or distal activation of (hetero) aromatic rings via single-electron oxidation for relieving the tension. In this study, we present a pioneering direct activation of alkyl cyclopropanes/butanes through electrochemical oxidation. This approach not only showcases the potential for ring-opening of cyclopropane/butane under electrochemical conditions but also streamlines the synthesis of diverse oxazolines and oxazines. The applicability of our method is exemplified by its broad substrate scopes. Notably, the products derived from cyclobutanes undergo a formal ring contraction to cyclopropanes, introducing an intriguing aspect to our discoveries. These discoveries mark a significant advancement in strain-release-driven skeletal rearrangement reactions of moderately strained rings, offering sustainable and efficient synthetic pathways for future endeavours.

Strain‐Release‐Driven Electrochemical Skeletal Rearrangement of Non‐Biased Alkyl Cyclopropanes/Butanes

AbstractCapitalizing the inherent strain energy within molecules, strain‐release‐driven reactions have been widely employed in organic synthesis. Small cycloalkanes like cyclopropanes and cyclobutanes, with their moderate ring strain, typically require dense functionalization to induce bias or distal activation of (hetero) aromatic rings via single‐electron oxidation for relieving the tension. In this study, we present a pioneering direct activation of alkyl cyclopropanes/butanes through electrochemical oxidation. This approach not only showcases the potential for ring‐opening of cyclopropane/butane under electrochemical conditions but also streamlines the synthesis of diverse oxazolines and oxazines. The applicability of our method is exemplified by its broad substrate scopes. Notably, the products derived from cyclobutanes undergo a formal ring contraction to cyclopropanes, introducing an intriguing aspect to our discoveries. These discoveries mark a significant advancement in strain‐release‐driven skeletal rearrangement reactions of moderately strained rings, offering sustainable and efficient synthetic pathways for future endeavours.

6686 Age-Associated Local GH Adversely Impacts the Microenvironmental Epithelial Landscape

Abstract Disclosure: V.M. Chesnokova: None. S. Zonis: None. T. Apaydin: None. C. Wang Valencia: None. R. Ainsworth: None. R. Barrett: None. A. Kettenbach: None. S. Melmed: None. The tissue microenvironmental homeostasis is disrupted with age-related changes. Knowledge of mechanisms enabling the age-associated tissue landscape is limited. Senescent cells increase with age, and the secretome released from senescence cells (SASP) affects neighboring cells, often creating a milieu favoring neoplasia. We previously showed that local non-pituitary epithelial growth hormone (GH) is induced and secreted from senescent cells, accumulates with age, and suppresses DNA repair, leading to abundant DNA damage. To examine SASP-derived autocrine GH actions, we analyzed normal human colon cells (hNCC) infected with lentivirus expressing hGH (lentiGH) or vector (lentiV). Mass spectrometry revealed significant changes in the Rho signaling pathway reflecting cell cytoskeletal rearrangements. To examine paracrine GH action, we co-cultured intact human 3D intestinal organoids with organoids infected with lentiGH for 5 weeks. Using whole-exome sequencing we found that local paracrine GH emanating from lentiGH organoids increases neighboring intact organoid cell chromosomal instability, inducing somatic mutations, including deletions, breakends, duplications, and insertions. Mechanisms for observed chromosomal instability include sequelae of GH-mediated suppressed DNA damage repair proteins including pATM, pATR, and pBRCA2, leading to DNA damage accumulation and favoring cell transformation over the long term. Furthermore, enriched gene ontology and KEGG pathway analysis of intact organoids exposed to paracrine GH identified distorted extracellular matrix (ECM) gene expression and focal adhesion pathways. We confirmed these genomic changes with Western blotting showing altered proteins associated with ECM and those responsible for cell structural rearrangements. Moreover, phospho-omics of GH-exposed cells revealed significant phosphorylation changes in proteins associated with cell skeletal rearrangement and cell migration pathways. We found that GH triggers these changes by EMT activation as shown by suppressing E-cadherin and inducing Twist2 and Snai1 transcription factors. Together, all these changes are consistent with observed increased migration, invasion, and anchorage-independent growth of hNCC infected with lentiGH or co-cultured with GH-secreting hNCC or with GH-secreting normal colon fibroblasts. As paracrine GH also facilitates metastases after intra-splenic injection of senescent cells in nude mice carrying xenografts secreting GH, our results indicate that accumulated and locally secreted GH in aging tissue enables a microenvironmental landscape favoring epithelial cell transformation. Presentation: 6/1/2024

Dearomative dimerization of quinolines and their skeletal rearrangement to indoles triggered by single-electron transfer

Dearomative dimerization of quinolines and their skeletal rearrangement to indoles triggered by single-electron transfer

Electrosynthesis of 1,2,3-Benzotriazines through an Iodide-Catalyzed Skeletal Editing of 3-Aminoindazoles.

This report describes an environmentally benign synthesis of 1,2,3-benzotriazines through an iodide-catalyzed electro-oxidative N-centered [1,2]-rearrangement of 3-aminoindazoles. The developed method demonstrates the activation of heteroatoms via electrochemically generated reactive iodide species without using any metal catalysts and peroxides. The protocol features practical and mild reaction conditions and displays a wide substrate scope. Various mechanistic experiments and cyclic voltammetric studies have been instrumental in elucidating the reaction mechanism, operating via a skeletal rearrangement of 3-aminoindazoles.

Oxidation of NOBINs Toward α-Spiropyrrolidones.

While the oxidation of phenols and BINOLs is well documented to lead to a broad range of useful organic scaffolds, that of NOBINs is far less explored. We investigate herein their oxidation with a number of standard chemical oxidants, leading upon skeletal rearrangement to the corresponding α-spiropyrrolidones, which represent a rare and highly valuable heterocyclic core.

Coronene‐Based 2D Networks by On‐Surface Skeletal Rearrangement of Sumanene Precursors

The design of novel low‐dimensional carbon materials is at the forefront of modern chemistry. Recently, on‐surface covalent synthesis has emerged as a powerful strategy to synthesize previously precluded compounds and polymers. Here, we report a scanning probe microscopy study, complemented by theoretical calculations, about the sequential skeletal rearrangement of sumanene‐based precursors into a coronene‐based organometallic network by stepwise intra‐ and inter‐molecular reactions on Au(111). Interestingly, upon higher annealing, the formed organometallic networks evolve into two‐dimensional coronene‐based covalently‐linked patches through intermolecular homocoupling reactions. A new reaction mechanism is proposed based on the role of C‐Au‐C motifs to promote two stepwise carbon‐carbon couplings to form cyclobutadiene bridges. Our results pave avenues for the conversion of molecular precursors on surfaces, affording the design of unexplored two‐dimensional organometallic and covalent materials.

Cycloaddition and Skeleton Rearrangement of Heterocyclic Ketene Aminals (HKAs) with 1-Diazonaphthalen-2(1H)-ones for the Synthesis of Functionalized 1,2,3-Triazoles.

We developed a protocol for the synthesis of highly functionalized 5,6-dihydro-imidazo[1,2-c][1,2,3]triazole derivatives 4-5 (DHITs) from 1-diazonaphthalen-2(1H)-one derivatives with heterocyclic ketene aminals (HKAs). This strategy involved cycloaddition and skeletal rearrangement entailing the heating of a mixture of substrates 1 with HKAs 2-3 and THF without any catalyst. As a result, a series of DHITs 4-5 were produced by cleaving one bond (1 C═N bond) and forming three bonds (1 N-N and 2 C-N bonds) in a single step. This protocol achieved the dual functionalization of diazo building blocks involving both the aromatic nitrogen alkylation reaction to form an ArC-N bond without any metal catalyst and the intermolecular cycloaddition of the N═N bond. These strategies can be used to synthesize functionalized DHITs for combinatorial and parallel syntheses via one-pot reactions without any catalyst.

(Invited) Thermally Selective Skeletal Rearrangements at Interfaces

Thermal rearrangements, in which an atom, ion or chemical unit of a molecule is rearranged to obtain a structural isomer of the original molecule under a thermal stimulus, represents an excellent alternative to induce the formation of novel antiaromatic PCHs and conjugated polymers not accessible otherwise. Only recently, a few strain-induced rearrangement reactions of precursors that are composed of rigid and strained three dimensional (3D) structures have shown skeletal rearrangements in their backbone after planarization on metal surfaces. In this respect, the selectivity of on-surface chemical reaction pathways is a promising approach to increase synthetic versatility, though remains largely underexplored. In this talk I will review our recent discoveries regarding the exploitation of thermal rearrangements to form 0D, 1D and 2D unique molecular nanocarbons.

Gem-Dibromovinylenes: Highly Versatile Systems for On-Surface Synthesis

The advent of the so-called On-Surface synthesis represents a new scenario where testing new reaction conditions affording disruptive materials impossible to be obtained by conventional synthetic chemistry. In this regard, we have reported an unprecedented chemical reaction from tetrabromo-p-quinodimethanes (TBQs) which, by heating on gold surface, has allowed to obtain a variety of new 1D π-conjugated polymers,[1] some of them exhibiting a quasimetallic behavior.[2]In this presentation, new designed organic molecules endowed with gem-dibromovinylene units have been synthesized with the aim of broadening the scope of this highly reactive functional group to other on-surface chemical reactions.[3] Thus, new different polymers or molecular systems will be presented and discussed.[4] References [1] A. Sánchez-Grande, et al., "On-surface synthesis of ethynylene bridged anthracene polymers", Angew. Chem. Int. Ed., 2019, 58, 6559-6563.[2] Cirera, B., et al., “Tailoring topological order and π-conjugation to engineer quasi-metallic polymers”. Nat. Nanotechnol. 2020, 15, 437–443.[3] Sánchez-Grande, et al., "Surface-assisted Synthesis of N-substituted π-Conjugated Polymers" Adv. Sci., 2022, - advs.202200407R1[4] E. Pérez-Elvira, et al., "Generating Antiaromaticity: Thermally-selective Skeletal Rearrangements at Interfaces", Nat. Synth., 2023, NATSYNTH-22121246B.

Modulating the Photophysical Properties of Twisted Donor-Acceptor-Donor π-Conjugated Molecules: Effect of Heteroatoms, Molecular Conformation, and Molecular Topology.

ConspectusModulating the photophysical properties of organic emitters through molecular design is a fundamental endeavor in materials science. A critical aspect of this process is the control of the excited-state energy, which is essential for the development of triplet exciton-harvesting organic emitters, such as those with thermally activated delayed fluorescence and room-temperature phosphorescence. These emitters are pivotal for developing highly efficient organic light-emitting diodes and bioimaging probes. A particularly promising class of these emitters consists of twisted donor-acceptor organic π-conjugated scaffolds. These structures facilitate a spatial separation of the frontier molecular orbitals, which is crucial for achieving a narrow singlet-triplet energy gap. This narrow gap is necessary to overcome the endothermic reverse intersystem crossing process, enhancing the efficiency of thermally activated delayed fluorescence. To precisely modulate the photophysical properties of these emitting materials, it is essential to understand the electronic structures of new donor-acceptor scaffolds, especially those influenced by heteroatoms, as well as their conformations and topologies. This understanding not only improves the efficiency of these emitters but also expands their potential applications in advance technologies.In 2014, the Takeda group made a significant breakthrough by discovering a novel method for synthesizing U-shaped diazaacenes (dibenzo[a,j]phenazine) through an oxidative skeletal rearrangement of 1,1'-binaphthalene-2,2'-diamines. This class of compounds is typically challenging to synthesize using conventional organic reactions. The resulting unique geometric and electronic structure of U-shaped diazaacenes opened new possibilities for photophysical applications. Leveraging the U-shaped structure, photoluminescent properties, and high electron affinity, we developed twisted donor-acceptor-donor compounds. These compounds exhibit efficient thermally activated delayed fluorescence, stimuli-responsive luminochromism, heavy atom-free room-temperature phosphorescence, and anion-responsive red shifts. These innovative emitters have demonstrated significant potential in various practical applications, including organic light-emitting diode devices and advanced sensing systems.In this Account, I summarize our achievements in modulating the photofunctions of dibenzo[a,j]phenazine-cored twisted donor-acceptor-donor compounds by controlling excited-state singlet-triplet energy gaps through conformational regulation. Our comprehensive studies revealed the significant impact of heteroatoms, molecular conformations, and topologies on the photophysics of these compounds. These findings highlight the importance of molecular engineering in tailoring the photophysical properties of organic donor-acceptor π-conjugated materials for specific applications. Our research has demonstrated that incorporating heteroatoms into the molecular framework effectively tunes the electronic properties and, consequently, the photophysical behavior of the compounds. Understanding the influence of heteroatoms, conformational dynamics, and molecular topology on excited-state behavior will open new avenues for next-generation optoelectronic devices and biological technologies. These advancements include ultra-low-power displays, photonic communication, and super-resolution biomedical imaging. Ultimately, our work highlights the potential of strategic molecular design in driving innovation across various fields, paving the way for the development of cutting-edge technologies that leverage the unique properties of organic emitters.

Ring Contraction of Saturated Cyclic Amines and Rearrangement of Acyclic Amines Through Their Corresponding Hydroxylamines

Compared to modifications at the molecular periphery, skeletal adjustments present greater challenges. Within this context, skeletal rearrangement technology stands out for its significant advantages in rapidly achieving structural diversity. Yet, the development of this technology for ring contraction of saturated cyclic amines remains exceedingly rare. While most existing methods rely on specific substitution patterns to achieve ring contraction, there is a persistent demand for a more general strategy for substitution‐free cyclic amines. To address this issue, we report a B(C6F5)3‐catalyzed skeletal rearrangement of hydroxylamines with hydrosilanes. This methodology, when combined with the N‐hydroxylation of amines, enables the regioselective ring contraction of cyclic amines and proves equally effective for rapid reorganization of acyclic amine skeletons. By this, the direct scaffold hopping of drug molecules and the strategic deletion of carbon atoms are achieved in a mild manner. Based on mechanistic experiments and density functional theory calculations, a possible mechanism for this process is proposed.

Ring Contraction of Saturated Cyclic Amines and Rearrangement of Acyclic Amines Through Their Corresponding Hydroxylamines.

Compared to modifications at the molecular periphery, skeletal adjustments present greater challenges. Within this context, skeletal rearrangement technology stands out for its significant advantages in rapidly achieving structural diversity. Yet, the development of this technology for ring contraction of saturated cyclic amines remains exceedingly rare. While most existing methods rely on specific substitution patterns to achieve ring contraction, there is a persistent demand for a more general strategy for substitution-free cyclic amines. To address this issue, we report a B(C6F5)3-catalyzed skeletal rearrangement of hydroxylamines with hydrosilanes. This methodology, when combined with the N-hydroxylation of amines, enables the regioselective ring contraction of cyclic amines and proves equally effective for rapid reorganization of acyclic amine skeletons. By this, the direct scaffold hopping of drug molecules and the strategic deletion of carbon atoms are achieved in a mild manner. Based on mechanistic experiments and density functional theory calculations, a possible mechanism for this process is proposed.

A Functional Switch Between Asperfumene and Fusicoccadiene Synthase and Entrance to Asperfumene Biosynthesis through a Vicinal Deprotonation-Reprotonation Process.

The diterpene synthase AfAS was identified from Aspergillus fumigatiaffinis. Its amino acid sequence and-according to a structural model-active site architecture are highly similar to those of the fusicocca-2,10(14)-diene synthase PaFS, but AfAS produces a structurally much more complex diterpene with a novel 6-5-5-5 tetracyclic skeleton called asperfumene. The cyclisation mechanism of AfAS was elucidated through isotopic labelling experiments and DFT calculations. The reaction cascade proceeds in its initial steps through similar intermediates as for the PaFS cascade, but then diverges through an unusual vicinal deprotonation-reprotonation process that triggers a skeletal rearrangement at the entrance to the steps leading to the unique asperfumene skeleton. The structural model revealed only one major difference between the active sites: The PaFS residue F65 is substituted by I65 in AfAS. Intriguingly, site-directed mutagenesis experiments with both diterpene synthases revealed that position 65 serves as a bidirectional functional switch for the biosynthesis of tetracyclic asperfumene versus structurally less complex diterpenes.

Structural Optimization of Marine Natural Product Pretrichodermamide B for the Treatment of Colon Cancer by Targeting the JAK/STAT3 Signaling Pathway.

Marine natural product (MNP) pretrichodermamide B (Pre B, 9) was identified as a novel STAT3 inhibitor in our previous work, while its metabolic instability hindered its further development. To address this drawback, ligand structure-based drug design was adopted leading to a series of Pre B derivatives. Among them, MNP trichodermamide B (tri B, 24) obtained by skeletal rearrangement exhibited more potent antiproliferative activity with an IC50 value of 0.12 μM against HCT116. Notably, 24 stood out with improved metabolic stability (T1/2 = 31 min) and more favorable oral bioavailability (F = 37.5%). Further studies indicated that 24 blocked JAK/STAT3 signaling in dose- and time-dependent manner. In vivo, 24 suppressed tumor growth (TGI = 65%) at a dose of 20 mg/kg in a HCT116-derived xenograft mouse model. Overall, 24 might be a promising lead compound for colon cancer and is worthy of further investigation.

Unique Reactivity of the 1,4-Bis(silyloxy)-1,3-cyclopentadiene Moiety: Application to the Synthesis of 7-Norbornanone Derivatives.

We describe a method for the synthesis of various 2-silyloxy-2-norbornen-7-ones by exploiting the specific reactivity of the 1,4-bis(silyloxy)-1,3-cyclopentadiene framework, which is generated by the silylation of a 2,2-disubstituted-1,3-cyclopentanedione bearing a picolinoyloxy group at the 2' position of its C-2 side chain. The release of the acyloxy group during the reaction generates carbocations that are then attacked by silyloxy-substituted carbons in the 1,4-bis(silyloxy)-1,3-cyclopentadiene moiety skeleton, forming a 4,5-cis-fused ring skeleton. Skeletal rearrangement of the bicyclic core results in the formation of the corresponding 2-silyloxy-2-norbornen-7-one. This novel transformation of 1,3-cyclopentanedione moieties can be used to synthesise other cyclopentenone-fused bicyclic frameworks.

Skeletal Rearrangement of Oxazole to Azepine and Pyrrole through Dynamic 8π Electrocyclizations.

We present a novel approach for the skeletal rearrangement of an oxazole into an azepine and pyrrole through a dynamic electrocyclization process, showing an innovative, unconventional reaction sequence. This method enables precise control of regioselectivity in competitive 6π and 8π electrocyclization reactions, rendering the final products rich in functional groups that can be further developed for the synthesis of nitrogen-containing scaffolds. This is an unprecedented example of the selective synthesis of seven- and five-member heterocycles via dynamic electrocyclization ring opening or closure.