This article provides a comprehensive analysis of the concept and features of the competencies of Ukrainian customs authorities considering ongoing innovations in the customs sector. As Ukraine follows its Euro-integration path, aimed at modernizing its economic infrastructure, addressing technological gaps, attracting foreign investments, and enhancing its international competitiveness, the role of customs authorities becomes vital in facilitating effective foreign economic activities. The article underscores the critical need to update the competencies of customs authorities to meet global standards and incorporate advanced innovative technologies, as envisioned in Ukraine’s Innovation Development Strategy up to 2030. It explores the impact and relevance of innovations such as the ‘Smart Customs’ initiatives, ‘Single Window’ system, pre-arrival cargo information systems, radio-frequency identification, and blockchain technology in improving customs control, management, and interactions with external partners. A major focus of the article is on the new competencies required by customs authorities to successfully implement these innovations. It highlights the importance of developing digital, intellectual, partnership, and security skills. Furthermore, the article examines the effects of economic and political instability, particularly the ongoing conflict in Ukraine, on the innovation processes within customs operations. It identifies significant challenges such as the difficulties in exporting high-tech goods, offering incentives for the import of innovative equipment, and the application of non-tariff regulatory measures, including certification, quotas, and licensing. The article provides detailed recommendations for enhancing the organizational structures of customs authorities and calls for updating the legal and regulatory framework to align with current demands and standards. It advocates for the creation of a modern, intelligent customs system that can rapidly and effectively adapt to changes using state-of-the-art digital technologies and security methods. Emphasis is placed on the necessity of enhancing the qualifications of customs professionals, which is deemed essential for the successful integration of innovations in customs control.