Context. Short-term X-ray variability in active galactic nuclei (AGNs) can be explained as being due to varying X-ray absorption induced by the temporary occultation of the primary X-ray source, when moving absorbing clouds cross the line of sight to the X-ray source itself. Earlier work suggests that these absorbing clouds have physical properties similar to those of broad-line region (BLR) emitting clouds and are located in the same spatial region. Aims. We intend to extract physical information on each individual absorber associated with any given occultation event detected in our sample and to analyse general properties of the cloud ensemble whose components can produce X-ray eclipses. Methods. From the analysis of previously detected occultation events, two ‘observables’ characterising each single occultation event can be derived: the peak fractional hardness ratio variation (ΔHR/HR) and the duration of the event normalised by a characteristic eclipse timescale evaluated for each AGN source. To determine the eclipsing cloud properties, we devised a procedure a) based on simplifying assumptions on the geometry of both the X-ray source and the cloud-like gas condensations, and on the cloud X-ray absorbing properties in the energy range of interest (2–10 keV), and b) relying on a set of simulated instrumental responses from both XMM and Suzaku relevant instruments to different incoming X-ray spectra, absorbed with varying absorber column density and maximum covering factor during the occultation. Thus, we derived information on the individual cloud producing any given occultation event, determining the cloud radius normalised to that of the X-ray source, the spatial location of the cloud, and an estimate of the cloud gas number density for reasonable values of the equivalent absorber column density. Results. The physical properties of eclipsing clouds that we obtained are consistent with those of BLR clouds. We can exclude the dominance, in the ensemble cloud size distribution, of clouds larger than about 10–12 times the Schwarzschild radius characterising each AGN, and we do not find any significant dependence of the cloud physical size on the distance from the central black hole, in agreement with the results of our previous work. As for the number density of these gas condensations, with our procedure we obtained values within a range of ∼109 − 1011 cm−3, which is consistent with the estimates derived from broad emission line analysis.