Single-molecule Surface-enhanced Raman Scattering Research Articles

From Bulk to Single Molecules: Surface-Enhanced Raman Scattering of Cytochrome C Using Plasmonic DNA Origami Nanoantennas.

Cytochrome C, an evolutionarily conserved protein, plays pivotal roles in cellular respiration and apoptosis. Understanding its molecular intricacies is essential for both academic inquiry and potential biomedical applications. This study introduces an advanced single-molecule surface-enhanced Raman scattering (SM-SERS) system based on DNA origami nanoantennas (DONAs), optimized to provide unparalleled insights into protein structure and interactions. Our system effectively detects shifts in the Amide III band, thereby elucidating protein dynamics and conformational changes. Additionally, the system permits concurrent observations of oxidation processes and Amide bands, offering an integrated view of protein structural and chemical modifications. Notably, our approach diverges from traditional SM-SERS techniques by de-emphasizing resonance conditions for SERS excitation, aiming to mitigate challenges like peak oversaturation. Our findings underscore the capability of our DONAs to illuminate single-molecule behaviors, even within aggregate systems, providing clarity on molecular interactions and behaviors.

The Effect of Nanoparticle Composition on the Surface-Enhanced Raman Scattering Performance of Plasmonic DNA Origami Nanoantennas.

A versatile generation of plasmonic nanoparticle dimers for surface-enhanced Raman scattering (SERS) is presented by combining a DNA origami nanofork and spherical and nonspherical Au or Ag nanoparticles. Combining different nanoparticle species with a DNA origami nanofork to form DNA origami nanoantennas (DONAs), the plasmonic nanoparticle dimers can be optimized for a specific excitation wavelength in SERS. The preparation of such nanoparticle dimers is robust enough to enable the characterization of SERS intensities and SERS enhancement factors of dye-modified DONAs on a single dimer level by measuring in total several thousands of dimers from five different dimer designs, each functionalized with three different Raman reporter molecules and measured at four different excitation wavelengths. Based on these data, SERS enhancement factor (EF) distributions have been determined for each dimer design and excitation wavelengths. The structures and measurement conditions with the highest EFs are suitable for single-molecule SERS (SM-SERS), which is realized by placing single dye molecules into hot spots. We demonstrate that the probability of placing single molecules in a strongly enhancing hot spot for SM-SERS can be increased by using anisotropic nanoparticles with several sharp edges, such as nanoflowers. Combining a Ag nanoparticle with a Au particle in one dimer structure allows for a broadband excitation covering almost the whole visible range. The most versatile plasmonic dimer structure for SERS combines a spherical Ag nanoparticle with a Au nanoflower. Employing the discontinuous Galerkin time domain method, we numerically investigate the bare, symmetric dimers with respect to spectral and near-field properties, showing that, indeed, the nanoflowers induce multiple hot spots located at the edges which surpass the intensity of the spherical dimers, indicating the possibility for SM-SERS. The presented DONA structures and SERS data provide a robust basis for applying such designs as versatile SERS tags and as substrates for SM-SERS measurements.

Verification and Analysis of Single-Molecule SERS Events via Polarization-Selective Raman Measurement.

We propose polarization-selective Raman measurement as a decent method for single-molecule surface-enhanced Raman scattering (SMSERS) verification. This approach features rapid acquisition of SMSERS events and appeals liberal requirements for analyte concentration. It is demonstrated as an efficient tool in sorting out dozens of SMSERS events from a large-scale plasmonic dimer array. In addition, it allows identification of a mixed SMSERS event containing two different individual molecules. In this article, the RPM method is employed to explore the underlying mechanisms of signal blinking, spectral wandering, and other unique characteristics in SMSERS. We observed synchronized blinking of different modes from one Rhodamine 6G (R6G) molecule, but a disagreement is found in a mixed SMSERS event containing one R6G molecule and one crystal violet molecule. Our approach offers a reliable means to interpret SMSERS events in statistical terms and facilitate the fundamental understanding of SMSERS.

Dynamic Imaging of Multiple SERS Hotspots on Single Nanoparticles

Signal intensity fluctuations are a ubiquitous characteristic of single-molecule surface-enhanced Raman scattering (SERS). In this work, we observed SERS intensity fluctuations (SIFs) from single n...

Single-Molecule Surface-Enhanced Raman Scattering as a Probe of Single-Molecule Surface Reactions: Promises and Current Challenges.

The initial observations of surface-enhanced Raman scattering (SERS) from individual molecules (single-molecule SERS, SMSERS) have triggered ever more detailed mechanistic studies on the SERS process. The studies not only reveal the existence of extremely enhanced and confined fields at the gaps of Ag or Au nanoparticles but also reveal that the spatial, spectral, and temporal behaviors of the SMSERS signal critically depend on many factors, including plasmon resonances of nanostructures, diffusion (lateral and orientational) of molecules, molecular electronic resonances, and metal-molecule charge transfers. SMSERS spectra, with their molecular vibrational fingerprints, should in principle provide molecule-specific information on individual molecules in a way that any other existing single-molecule detection method (such as the ones based on fluorescence, mechanical forces, or electrical currents) cannot. Therefore, by following the spectro-temporal evolution of SMSERS signals of reacting molecules, one should be able to follow chemical reaction events of individual molecules without any additional labels. Despite such potential, however, real applications of SMSERS for single-molecule chemistry and analytical chemistry are scarce. In this Account, we discuss whether and how we can use SMSERS to monitor single-molecule chemical kinetics. The central problem lies in the experimental challenges of separately characterizing and controlling various sources of fluctuations and spatial variations in such a way that we can extract only the chemically relevant information from time-varying SMSERS signals. This Account is organized as follows. First, we outline the standard theory of SMSERS, providing an essential guide for identifying sources of spatial heterogeneity and temporal fluctuations in SMSERS signals. Second, we show how single-molecule reaction events of surface-immobilized reactants manifest themselves in experimental SMSERS trajectories. Comparison of the reactive SMSERS data (magnitudes and frequencies of discrete transitions) and the predictions of SMSERS models also allow us to assess how faithfully the SMSERS models represent reality. Third, we show how SMSERS spectral features can be used to discover new reaction intermediates and to interrogate metal-molecule electronic interactions. Finally, we propose possible improvements in experimental design (including nanogap structures and molecular systems) to make SMSERS applicable to a broader range of chemical reactions occurring under ambient conditions. The specific examples discussed in this Account are centered around the single-molecule photochemistry of 4-nitrobenzenethiol on metals, but the conclusions drawn from each example are generally applicable to any reaction system involving small organic molecules.

High-speed imaging of surface-enhanced Raman scattering fluctuations from individual nanoparticles.

The concept of plasmonic hotspots is central to the interpretation of the surface-enhanced Raman scattering (SERS) effect. Although plasmonic hotspots are generally portrayed as static features, single-molecule SERS (SM-SERS) is marked by characteristic time-dependent fluctuations in signal intensity. The origin of those fluctuations can be assigned to a variety of dynamic and complex processes, including molecular adsorption or desorption, surface diffusion, molecular reorientation and metal surface reconstruction. Since each of these mechanisms simultaneously contributes to a fluctuating SERS signal, probing their relative impact in SM-SERS remains an experimental challenge. Here, we introduce a super-resolution imaging technique with an acquisition rate of 800,000 frames per second to probe the spatial and temporal features of the SM-SERS fluctuations from single silver nanoshells. The technique has a spatial resolution of ~7 nm. The images reveal short ~10 µs scattering events localized in various regions on a single nanoparticle. Remarkably, even a fully functionalized nanoparticle was 'dark' more than 98% of the time. The sporadic SERS emission suggests a transient hotspot formation mechanism driven by a random reconstruction of the metallic surface, an effect that dominates over any plasmonic resonance of the particle itself. Our results provide the SERS community with a high-speed experimental approach to study the fast dynamic properties of SM-SERS hotspots in typical room-temperature experimental conditions, with possible implications in catalysis and sensing.

Ultrafast selective excitation of surface-enhanced Raman scattering from a single molecule by shaping pump and Stokes pulses

Surface-enhanced Raman scattering (SERS) has attracted much attention as an important technique for studying and monitoring the behavior of molecules. Coherent control by shaping femtosecond pulses is an efficient method for controlling molecular vibration state, rotation state, ionization state, and other molecule dynamics. In this paper, we propose a theoretical scheme of selective excitation of SERS from a single porphycene molecule with two Raman peaks at 327[Formula: see text]cm[Formula: see text] and 367[Formula: see text]cm[Formula: see text] placed in the gap between silver dimer nanospheres. Based on the theory of quantum coherent control, selective excitation of the peak at 327[Formula: see text]cm[Formula: see text] and depression of another at 367[Formula: see text]cm[Formula: see text] are demonstrated by properly shaping femtosecond laser pulses with central frequency of 12500[Formula: see text]cm[Formula: see text] and a full width at half maximum (FWHM) of 300[Formula: see text]cm[Formula: see text]. Ultrafast dynamics of the response of dimer nanospheres to the shaped pump and Stokes pulses are simulated by finite difference time domain (FDTD) method followed by Fourier transform. The enhanced and selected single molecule SERS is realized simultaneously. The SERS probability is enhanced by more than six orders in magnitude compared with the case in air environment, and the FWHMs of the enhanced and the depressed Raman peaks are both larger than 17[Formula: see text]cm[Formula: see text] despite the narrow gap of only 40[Formula: see text]cm[Formula: see text] between the two Raman peaks.

Intensity Fluctuations in Single-Molecule Surface-Enhanced Raman Scattering.

Around 20 years ago, the first reports of single-molecule surface-enhanced Raman scattering (SM-SERS) caused a revolution in nanotechnology. Several researchers were quick to recognize the importance of a technique that can provide molecular vibrational fingerprinting at the SM level. Since then, a large amount of work has been devoted to the development of nanostructures capable of SM-SERS detection. A great effort has also been geared toward elucidating the different mechanisms that contribute to the effect. The understanding of the concept of plasmonic SERS hotspots, the role of chemical effects, and the dynamics of atomic and cluster rearrangements in nanometric domains has significantly advanced, driven by new computational and experimental methods used to study SM-SERS. In particular, SERS intensity fluctuations (SIFs) are now recognized as a hallmark of SM-SERS. Interpretation of SM-SERS data must take into consideration temporal and spatial variations as a natural consequence of the extreme localization inherent to surface plasmon resonances. Further analysis of variations in spectral signature, due to either molecular reorientation or photo (or thermal) processes, pointed to a new area that combines the power of SERS fingerprinting at the SM level to modern concepts of catalysis, such as hot-electrons-driven chemistry. This large body of work on the fundamental characteristics of the SM-SERS effect paved the way to the interpretation of other related phenomena, such as tip-enhanced Raman scattering (TERS). Despite all the fundamental progress, there are still very few examples of real applications of SM-SERS. In recent years, our research group has been studying SIFs, focused on different ways to use SM-SERS. The obvious application of SM-SERS is in analytical chemistry, particularly for quantification at ultralow concentrations (below 1 nM). However, quantification using SM-SERS faces a fundamental sampling problem: the analytes (adsorbed in very small amounts, i.e., low surface coverage) must find rare SERS hotspots (areas with intense electric field localization that yields SERS). This limitation leads to strong temporal and spatial variations in SERS intensities, which translates into very large error bars in an experimental calibration curve. We tackled this problem by introducing the concept of "digital SERS". This approach provided a roadmap for SERS quantification at ultralow concentrations and a potential pathway for a better understanding of the "reproducibility problem" associated with SERS. In this Account, we discuss not only the analytical applications but also other implementations of SM-SERS demonstrated by our group. These include the use of SM-SERS as a tool to probe colloidal aggregation, to evaluate the efficiency of SERS substrates, and to characterize the energy of localized resonances. SERS involves a series of random processes: hotspots are rare; surfaces/clusters constantly reconstruct; and molecules diffuse, adsorb, and desorb. All these pathways contribute to strong fluctuations in SERS intensities. Our work indicates that a statistical view of the effect can lead to interesting insights and the potential to fulfill the promise of this SM technique for real-world applications.

DNA Origami Directed Assembly of Gold Bowtie Nanoantennas for Single-Molecule Surface-Enhanced Raman Scattering.

Metallic bowtie nanoarchitectures can produce dramatic electric field enhancement, which is advantageous in single-molecule analysis and optical information processing. Plasmonic bowtie nanostructures were successfully constructed using a DNA origami-based bottom-up assembly strategy, which enables precise control over the geometrical configuration of the bowtie with an approximate 5 nm gap. A single Raman probe was accurately positioned at the gap of the bowtie. Single-molecule surface-enhanced Raman scattering (SM-SERS) of individual nanostructures, including ones containing an alkyne group, was observed. The design achieved repeatable local field enhancement of several orders of magnitude. This method opens the door on a novel strategy for the fabrication of metal bowtie structures and SM-SERS, which can be utilized in the design of highly-sensitive photonic devices.

DNA Origami Directed Assembly of Gold Bowtie Nanoantennas for Single‐Molecule Surface‐Enhanced Raman Scattering

AbstractMetallic bowtie nanoarchitectures can produce dramatic electric field enhancement, which is advantageous in single‐molecule analysis and optical information processing. Plasmonic bowtie nanostructures were successfully constructed using a DNA origami‐based bottom‐up assembly strategy, which enables precise control over the geometrical configuration of the bowtie with an approximate 5 nm gap. A single Raman probe was accurately positioned at the gap of the bowtie. Single‐molecule surface‐enhanced Raman scattering (SM‐SERS) of individual nanostructures, including ones containing an alkyne group, was observed. The design achieved repeatable local field enhancement of several orders of magnitude. This method opens the door on a novel strategy for the fabrication of metal bowtie structures and SM‐SERS, which can be utilized in the design of highly‐sensitive photonic devices.

Determining molecular orientation via single molecule SERS in a plasmonic nano-gap.

In this work, plasmonic nano-gaps consisting of a silver nanoparticle coupled to an extended silver film have been fully optimized for single molecule Surface-Enhanced Raman Scattering (SERS) spectroscopy. The SERS signal was found to be strongly dependent on the particle size and the molecule orientation with respect to the field inside the nano-gap. Using Finite Difference Time Domain (FDTD) simulations to complement the experimental measurements, the complex interplay between the excitation enhancement and the emission enhancement of the system as a function of particle size were highlighted. Additionally, in conjunction with Density Functional Theory (DFT), the well-defined field direction in the nano-gap enables to recover the orientation of individual molecules.

Ultrasensitive and towards single molecule SERS: general discussion.

The first page of this article is displayed as the abstract.

Electrodynamical forbiddance of the strong quadrupole light-molecule interaction in fullerene C60: Experiment and the theory

It is demonstrated that the forbidden lines, which exist in the SERS and SEIRA spectra of molecules with sufficiently high symmetry are absent in these spectra of the fullerene C60. In addition the enhancement coefficient in Single molecule SERS on C60 is ∼108 that is significantly less than the value 1014–1015, characteristic for other molecules, which do not belong to the ones with cubic and icosahedral symmetry groups. These results can be explained by existence of so-called electrodynamical forbiddance arising due to belonging of C60 to the icosahedral symmetry group and due to the electrodynamical law divE=0.

A high-yield, one-step synthesis of surfactant-free gold nanostars and numerical study for single-molecule SERS application

We report a high-yield synthesis of star-shaped gold nanostructures in one step, using a new surfactant-free wet chemistry method. Compared to the existing reports, these nanostars were found to have longer and sharper spikes anchored uniformly on the surface of the spherical core, allowing at least a few hot spots irrespective of the incident light polarization. The average experimental values of core radius and spike length were found to be 88.5 and 72 nm, respectively. Using these values in numerical simulations, the local electric field enhancement (η) and localized surface plasmon resonance (LSPR) spectrum were obtained. Moreover, the single-molecule surface-enhanced Raman scattering (SERS) enhancement factor was found to vary from 1010 to 1013 depending on the excitation wavelengths. Our theoretical calculations suggest that these nanostructures can be used to fabricate efficient SERS-based biosensors for the detection of single molecules in real time and for predicting structural information of single molecules.

Single-Molecule Surface-Enhanced (Resonance) Raman Scattering (SE(R)RS) as a Probe for Metal Colloid Aggregation State

Single-molecule surface-enhanced (resonance) Raman scattering (SM-SE(R)RS) studies have applications beyond analytical chemistry. For instance, SM-SERS spectra carry information about the molecule interaction with the hotspots (regions of strong electric field enhancement due to surface plasmon resonance). The analysis of the time- (or spatial-) dependent fluctuations in SM-SERS spectra permits, for instance, the study of resonance contributions from the local electric field to imbalances in the anti-Stokes to Stokes intensity ratios (IAS/IS). This analysis is a tool for the characterization of the resonance energies of the hotspots. In the case of colloidal samples, the structures of the hotspots and their properties are dependent upon the colloidal aggregation state. The analysis of the IAS/IS ratios in such a system can be a useful characterization tool to infer the hotspot structures for different aggregation states. In this work, the distributions of IAS/IS ratio for crystal violet (CV) adsorbed in A...

On the critical role of Rayleigh scattering in single-molecule surface-enhanced Raman scattering via a plasmonic nanogap.

Electromagnetic and chemical enhancement mechanisms are commonly used to account for single-molecule surface-enhanced Raman scattering (SM-SERS). Due to many practical limitations, however, the overall enhancement factor summed up from these two mechanisms is typically 5-6 orders of magnitude below the level of 10(14)-10(15) required for SM-SERS. Here, we demonstrate that the multiple elastic Rayleigh scattering of a molecule could play a critical role in further enhancing the Raman signal, when the molecule is trapped in a 2 nm gap between two Ag nanoparticles, pushing the overall enhancement factor close to the level needed for SM-SERS. As a universal physical process for all molecules interacting with light, we believe that Rayleigh scattering plays a pivotal and as yet unrecognized role in SERS, in particular, for enabling single-molecule sensitivity.

Ultrahigh Enhancement Factor by Using a Silver Nanoshell With a Gain Core Above a Silver Substrate for Surface-Enhanced Raman Scattering at the Single-Molecule Level

Single-molecule surface-enhanced Raman scattering (SERS) has been extensively studied over the past decade. In this paper, we propose a novel method to obtain ultrahigh enhancement of local electric fields by using a silver nanoshell with a gain core above a silver substrate. Numerical results show that an ultrahigh enhancement factor of the local electric field on the order of 10 5 -10 6 and a SERS enhancement factor on the order of 10 20 -10 25 can be obtained with the present system. The SERS enhancement factor is five orders of magnitude greater than the highest theoretical value reported for SERS applications at the single-molecule level. In addition, we use the finite-element method to analyze in detail the influences of the gain coefficient of the gain core and the other structure parameters on the enhancement factor.

Prospects for plasmonic hot spots in single molecule SERS towards the chemical imaging of live cells.

Single molecule surface enhanced Raman scattering (SM-SERS) is a highly local effect occurring at sharp edges, interparticle junctions and crevices or other geometries with a sharp nanoroughness of plasmonic nanostructures ("hot spots"). The emission of an individual molecule at SM-SERS conditions depends on the local enhancement field of the hot spots, as well as the binding affinity and positioning at a hot spot region. In this regard, the stability of near-field nano-optics at hot spots is critical, particularly in a biological milieu. In this perspective review, we address recent advances in the experimental and theoretical approaches for the successful development of SM-SERS. Significant progress in the understanding of the interaction between the excitation electromagnetic field and the surface plasmon modes at the metallic or metallic/dielectric interface of various curvatures are described. New knowledge on methodological strategies for positioning the analytes for SM-SERS and Raman-assisted SERS or the SERS imaging of live cells has been acquired and displayed. In the framework of the extensive development of SM-SERS as an advancing diagnostic analytical technique, the real-time SERS chemical imaging of intracellular compartments and tracing of individual analytes has been achieved. In this context, we highlight the tremendous potential of SERS chemical imaging as a future prospect in SERS and SM-SERS for the prediction and diagnosis of diseases.

Plasmofluidic single-molecule surface-enhanced Raman scattering from dynamic assembly of plasmonic nanoparticles.

Single-molecule surface-enhanced Raman scattering (SM-SERS) is one of the vital applications of plasmonic nanoparticles. The SM-SERS sensitivity critically depends on plasmonic hot-spots created at the vicinity of such nanoparticles. In conventional fluid-phase SM-SERS experiments, plasmonic hot-spots are facilitated by chemical aggregation of nanoparticles. Such aggregation is usually irreversible, and hence, nanoparticles cannot be re-dispersed in the fluid for further use. Here, we show how to combine SM-SERS with plasmon polariton-assisted, reversible assembly of plasmonic nanoparticles at an unstructured metal-fluid interface. One of the unique features of our method is that we use a single evanescent-wave optical excitation for nanoparticle assembly, manipulation and SM-SERS measurements. Furthermore, by utilizing dual excitation of plasmons at metal-fluid interface, we create interacting assemblies of metal nanoparticles, which may be further harnessed in dynamic lithography of dispersed nanostructures. Our work will have implications in realizing optically addressable, plasmofluidic, single-molecule detection platforms.

Observation of Surface-Enhanced Raman Scattering from Strongly Coupled Molecules and Localized Surface Plasmons in Resonance

The photoexcitation characteristics of materials have been investigated using surface enhanced Raman scattering (SERS) [1]. Signal enhancement by< 104 times of magnitude is caused by resonances that are induced by optical absorption. Previously documented studies have found that the absorption spectra of chromophores that were adsorbed to Au or Ag plasmonic nanoparticles can be strongly perturbed. This perturbation of the electronic transition should affect the SERS profiles in ways that differ from those predicted based on simple enhancement of the local electromagnetic field. Previously documented studies discussed about the SERS effect as involving transition dipole coupling between the chromophore and the metal, and also theoretical simulation including resonance coupling between the molecular electronic transition and the optical transition of the nanoparticles. Despite these attempts to research the Raman characteristics when the system achieved hybridized states, the Raman features in the strong coupling regime when using LSPR have not been clarified yet.In this study, polarized Raman scattering measurement was carried out using a hybridized system of Ag nano-dimer structures and organic dye molecules. Tuning of the localized surface plasmon resonance energy leads to modulation of the hybridized polariton energy. The anti-crossing behavior of the polariton energy implies a strong coupling regime with maximum Rabi splitting energy of 385 meV. The observation proves the effective Raman enhancement via the excitation of the upper and the lower blanches of the hybridized states at the gap of the metal dimer. Maximum Raman enhancement was obtained at an optimized resonant energy between the hybrid states and Raman excitation. Reference [1] M. Takase, F. Nagasawa, H. Nabika, K. Murakoshi, “Single Molecule Surface-Enhanced Raman Scattering as a Probe for Adsorption Dynamics on Metal Surfaces", in Frontiers of Surface-Enhanced Raman Scattering: Single-Nanoparticles and Single Cells, Y. Ozaki, K. Kneipp, and R. P. Aroca, John Wiley & Sons, New York, (2014).//