Single-crystal Electron Paramagnetic Resonance Research Articles

An exchange coupled meso-meso linked vanadyl porphyrin dimer for quantum information processing.

We report here the synthesis of a new meso-meso (m-m) singly linked vanadyl-porphyrin dimer that crystallizes in two different pseudo-polymorphs. The single crystal continuous-wave electron paramagnetic resonance investigation evidences a small but crucial isotropic exchange interaction, J, between the two tilted, and thus distinguishable, spin centers of the order of 10-2 cm-1. The experimental and DFT studies evidence a correlation between J values and porphyrin plane tilting angle and distortion. Pulsed EPR analysis shows that the two vanadyl dimers maintain the coherence time of the monomer. With the obtained spin Hamiltonian parameters, we identify suitable transitions that could be used as computational basis states. Our results, coupled with the evaporability of porphyrin systems, establish this class of dimers as extremely promising for quantum information processing applications.

Redox Active cAAC-Fluorene/Indene Systems Displaying Solvatochromism, Green Luminescence and pH Sensing: Functionalization of Fluorenyl/Indenyl Rings with Radical Carbene.

Two new series of air stable compounds of cAACX = fluorene/indene (X = Me2 , Et2 , Cy) [cAAC = cyclic (alkyl) amino carbene] have been isolated and well characterized by X-ray single crystal diffraction, photoluminescence, cyclic voltammogram (CV) and electron paramagnetic resonance (EPR) studies. Fluorescence studies reveals green light emission of cAAC bonded fluorene, whereas free fluorene generally displays a violet emission. Interestingly, the sterically crowded cAAC-fluorene analogue display solvatochromism and CF3 CO2 H sensing in solution. CV of the these compounds show a quasi-reversible electron transfer process, indicating the functionalization of fluorene/indene with radical anionic form of carbene, confirmed by CV/EPR measurements. DFT/TDDFT calculations and energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV) have been carried out to study different aspects of bonding and electronic transitions. Such a class of redox active and thermally stable organic molecules may be suitable for molecule based spin memory devices in future.

Interpretation of EPR and optical spectra of Ni(II) ions in crystalline lattices at ambient temperature.

Many biologically important paramagnetic metal ions are characterized by electron paramagnetic resonance (EPR) spectroscopy to use as spin probes to investigate the structure and function of biomolecules. Though nickel(II) ions are an essential trace element and part of many biomolecules, the EPR properties are least understood. Herein, the EPR and optical absorption spectra measured at 300 K for Ni(II) ions diluted in two different diamagnetic hosts are investigated and reported. The EPR spectrum of a polycrystalline Ni/Mg(3-methylpyrazole)6 (ClO4 )2 [Ni/MMPC] shows two transitions at X-band frequency (~9.5GHz), suggesting the zero-field splitting parameter (D) is larger than the resonance field of the free electron (Ho ). This incomplete and complex spectrum is successfully analyzed to obtain EPR parameters. The EPR spectrum of the polycrystalline Ni/Zn(pyrazole)6 (NO3 )2 [Ni/ZPN] shows a triplet spectrum indicating D<Ho . A detailed analysis of single-crystal EPR data yielded the spin Hamiltonian parameters. The optical absorption spectra are deconvoluted to understand the symmetry of the coordination environment in the complex.

Electron paramagnetic resonance study of the paramagnetic centers in gamma-irradiated oxalic acid dihydrate single crystal

The Electron Paramagnetic Resonance (EPR) spectra of the radicals produced by γ-irradiation of a single crystal of oxalic acid dihydrate (C2H6O6) have been reported. The EPR spectra of gamma-irradiated single crystals of oxalic acid dihydrate have been studied for different orientations of crystals in a magnetic field. As a result of studies carried out along three axes, it has been determined that there are two biradicals. The EPR spectra have been investigated at temperatures between 125 and 450 K. The spectra have been found to be temperature independent. The g values of the radiation damage centers observed in oxalic acid dihydrate acid single crystal and the hyperfine structure constants of the free electron with nearby protons have been obtained from the single crystal EPR analysis.

Multi-Frequency and Single-Crystal EPR on V4+ in W-Doped \u03b2-Vanadyl(V) Phosphate: Hyperfine Coupling- and g-Tensor Values and Orientation

Different structure types of vanadyl(V) orthophosphate [i.e. (VV ≡O)3+ orthophosphate] have been subjects of research due to their catalytic activity in the oxidation of n-butane to maleic anhydride. Electron paramagnetic resonance (EPR) spectroscopy can be exploited to elucidate the electronic structure of such compounds. When tuning the oxidation state of vanadium in (V1-xWx)OPO4, X-band EPR spectra have confirmed the presence of paramagnetic V4+ ions. However, some of the features in these spectra could not be explained. Here, powder samples of β-(VIV0.01VV.98WVI.01)OPO4 are investigated at S-, X- and Q- band, along with X-band EPR measurements on single crystals. Thereby, the discrepancies between the spectra and their simulations could be resolved. In particular, it could be shown that the g and A tensors are not coaxial. The resulting consistent EPR picture and the refined paramagnetic parameters are reported. The work underlines the indispensability of a multi-frequency approach in EPR for unequivocal conclusions.

Observation and deconvolution of a unique EPR signal from two cocrystallized spin triangles.

A 16-line pattern has been theoretically predicted, but hitherto not reported, for the Electron Paramagnetic Resonance (EPR) spectrum of antiferromagnetically coupled CuII triangles experiencing isotropic exchange of isosceles magnetic symmetry. Now, the crystallization of such a triangular species and its X-ray structure determination in a polar space group, R3 (No. 146), has enabled its single crystal EPR study. Its detailed magnetic susceptibility, and X- and Q-band, powder and single crystal EPR spectroscopic study reveals the effect of molecular structure and of Dzyaloshinskii-Moriya interactions (DMI) on the g‖, g⊥ and A‖ parameters of the spectrum; DMI is considered for the first time in such a context. Moreover, careful analysis of the spectrum allows the deconvolution of two slightly different cocrystallized magnetic species.

Structural Elucidation and Position Identification of Cu(II) ion in Hexaaquazinc(diaquabismalonto)zincate: Single Crystal EPR and Optical Studies

Single crystal electron paramagnetic resonance (EPR), powder X-ray diffraction (XRD), Fourier transform-infrared (FT-IR) and UV–Visible (UV–Vis) spectroscopy studies of Cu(II) doped in hexaaquazinc(diaquabismalonto)zincate (HZDMZ) have been investigated at room temperature. Angular variation of copper hyperfine lines in the three orthogonal planes shows the presence of a single site in substitutional position, with spin Hamiltonian parameters calculated from EPR spectra are gxx = 2.3940; gyy = 2.0919; g-zz = 2.0700; A–xx = 13.85 mT; Ayy = 1.79 mT; Azz = 1.39 mT. Molecular orbital coefficients β2 = 0.765 and e2 = 0.275 have been calculated, which reveal a moderately covalent metal–ligand bond. Optical and EPR data have been collaborated to obtain crystal field parameters, admixture and molecular orbital coefficients. Powder XRD, FT-IR and UV–Vis data confirms the structure of host complex and presence of the dopant.

Origin of Ferromagnetism and Magnetic Anisotropy in a Family of Copper(II) Triangles.

Previously reported ferromagnetic triangles (NnBu4 )2 [Cu3 (μ3 -Cl)2 (μ-4-NO2 -pz)3 Cl3 ] (1), (PPN)2 [Cu3 (μ3 -Cl)2 (μ-pz)3 Cl3 ] (2), (bmim)2 [Cu3 (μ3 -Cl)2 (μ-pz)3 Cl3 ] (3) and newly reported (PPh4 )2 [Cu3 (μ3 -Cl)2 (μ-4-Ph-pz)3 Cl3 ] (4) were studied by magnetic susceptometry, electron paramagnetic resonance (EPR) spectroscopy and ab initio calculations to assess the origins of their ferromagnetism and of the magnetic anisotropy of their ground S=3/2 state (PPN+ =bis(triphenylphosphine)iminium, bmim+ =1-butyl-3-methylbenzimidazolium, pz- =pyrazolate). Ab initio studies revealed the d character of the magnetic orbitals of the compressed trigonal bipyramidal copper(II) ions. Ferromagnetic interactions were attributed to weak orbital overlap via the pyrazolate bridges. From the wavefunctions expansions, the ratios of the magnetic couplings were determined, which were indeterminate by magnetic susceptometry. Single-crystal EPR studies of 1 were carried out to extend the spin Hamiltonian with terms which induce zero-field splitting (zfs), namely dipolar interactions, anisotropic exchange and Dzyaloshinskii-Moriya interactions (DMI). The data were treated through both a giant-spin model and through a multispin exchange-coupled model. The latter indicated that ≈62 % of the zfs is due to anisotropic and ≈38 % due to dipolar interactions. The powder EPR data of all complexes were fitted to a simplified form of the multispin model and the anisotropic and dipolar contributions to the ground state zfs were estimated.

Synthesis, structural, spectral and antimicrobial activity studies of copper-nalidixic acid complex with 1,10-phenanthroline: DFT and molecular docking.

The mix-ligand coordination compound, [Cu(Nal)(Phen)(H2O)].(Phen).ClO4.(H2O)2 (Nal=Monoanion of nalidixic acid and Phen=1,10- Phenanthroline), was investigated by focusing on its supramolecular architecture. Structural properties of the complex were characterized by XRD, spectroscopic methods and elemental analysis. The complex has crystallized in the triclinic crystal system and P-1 space group. In the structure where the Cu (II) ion is in the center of symmetry, nalidixate anion and water molecule coordinated to Cu (II) metal through oxygen atoms while phen coordinated through nitrogen atoms. The monomer units are connected by hydrogen bonds to form supramolecular structures. The ground state molecular structure of the complex was optimized using DFT/B3LYP/LANL2DZ method, and compared with experimental X-ray geometry. The FT-IR study of the complex was carried out in the middle IR region focusing on the characteristic vibrations of the free ligands and the complex. Scaled calculated vibrational frequencies are compared with experimental values. The magnetic properties of the complex were investigated by electron paramagnetic resonance (EPR) spectroscopy. Further ultra-violet (UV)-visible spectral analysis was also performed to understand optical properties. The experimental UV-Vis data were associated with the calculated frontier molecular orbitals HOMO/LUMO and, molecular electrostatic potentials (MEP) are also investigated. Biological study of the complex against Bacillus subtilis, Staphylococcus aureus, Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae, and Candida albicans showed very strong antibacterial activity with MIC values ranging from 128μg/ml to 1μg/ml concentration. The optimized complex is docked to the DNA Gyrase (3LPX) and gyrase tip IIA topoisomerase (3UC1).

Sequestration of Selenite and Selenate in Gypsum (CaSO4·2H2O): Insights from the Single-Crystal Electron Paramagnetic Resonance Spectroscopy and Synchrotron X-ray Absorption Spectroscopy Study.

Gypsum is the most common sulfate mineral on Earth's surface and is the dominant solid byproduct in a wide variety of mining and industrial processes, thus representing a major source for heavy metal(loid) contamination, including selenium. Gypsum crystals grown from the gel diffusion technique in 0.02 M Na2SeO4 solution at pH 7.5 and 0.02 M Na2SeO3 solutions at pH 7.5 and 9.0 contain 828, 5198, and 5955 ppm Se, respectively. Synchrotron Se K-edge X-ray absorption spectroscopic analyses show that selenite and selenate are the dominant species in Se4+- and Se6+-doped gypsum, respectively. The single-crystal EPR spectra of Se4+- and Se6+-doped gypsum after gamma-ray irradiation reveal five selenium-centered oxyradicals: SeO2-(I), SeO2-(II), SeO2-(III), SeO3-, and HSeO42-. The former three radicals provide unequivocal evidence for the substitution of their paramagnetic precursor SeO32- for SO42- in the gypsum structure, while the latter two confirm the replacement of SeO42- for SO42-. These results demonstrate that gypsum has a significant capacity for sequestrating both selenite and selenate in the structure but has a marked preference for the former, thus confirming important controls on the mobility and bioavailability of selenium oxyanions and pointing to optimal applications of gypsum for remediating selenium contamination under neutral to alkaline conditions.

Mechanism of Gd3+ uptake in gypsum (CaSO4·2H2O): Implications for EPR dating, REE recovery and REE behavior

Rare earth elements (REE) in gypsum have long attracted interest for geochemical applications from the reconstruction of paleoclimate, paleoenvironment and paleohydrology to the monitoring of volcanic and seismic activities. Resurgent interests in REE in gypsum stem from the potential recovery of these high-tech metals from gypsum-rich tailings. Development of new geochemical applications and invention of effective recovery technologies all require knowledge about the mechanism of REE uptake in gypsum. In this contribution, we have investigated Gd-doped gypsum from the gel diffusion technique at ambient conditions in the pH range from 6.5 to 9.5. Inductively coupled plasma mass spectrometry analyses of Gd-doped gypsum yielded 752 ppm Gd at pH = 6.5 down to 2.8 ppm Gd at pH = 9.5. Synchrotron Gd L3-edge X-ray absorption spectra show that Gd3+ has a local environment similar to that of Ca2+ in gypsum. Single-crystal electron paramagnetic resonance (EPR, also known as electron spin resonance or ESR) spectra reveal a dominant Gd3+ center with weak satellites. The dominant Gd3+ center arises from a substitutional Gd3+ ion at the Ca site retaining its C2 local symmetry, which is also confirmed by pulsed electron nuclear double resonance (ENDOR) data for proton hyperfine structures up to 5.2 Å away from Gd3+. The satellites are attributable to a Gd3+-Gd3+ pair (dimer) along the crystallographic a-axis with a dipolar coupling constant Dd/geβe = −13 G, which corresponds to a distance of 12.6 Å between the two Gd3+ ions and provides the first experimental confirmation for the substitution 2Gd3+ + □ = 3Ca2+ in gypsum. Hole trapping at cation vacancies associated with the incorporation of Gd3+ (and other trivalent REE) in gypsum offers a new class of radiation-induced paramagnetic defects in this mineral for EPR/ESR dating. These results also have implications for developing new technologies for effective recovery of REE from gypsum-rich tailings and for understanding the behavior of REE in evaporites and aqueous solutions.

ESR and luminescent properties of anion-deficient α-Al2O3 single crystals after high-dose irradiation by a pulsed electron beam

Electron spin resonance (ESR) and photoluminescence (PL) spectra of anion-deficient alumina single crystals were measured. High-dose irradiation by a pulsed electron beam (130 keV) causes an absorption line with g┴ = 2.008 ± 0.002 in the ESR spectrum. In contrast to the irradiation by the beta-source, there is no overlapping of this line with another one in the obtained ESR spectrum, which allowed to investigate the thermal stability of this line more in details and to prove that it consists of several elementary components. A drop in PL intensity of F+-centers (3.8 eV) and F-centers (3.0 eV) is observed with increasing of ESR absorption line with g┴ = 2.008 ± 0.002. Parallel studies of ESR and PL spectra under stepped annealing in the temperature range of 523–973 K showed that the radiation-induced paramagnetic center was stable up to 873–973 K. A possible association of the disappearance of the ESR absorption line with the destruction of F-type aggregate defect and with changing charge state of the paramagnetic center caused by emptying of deep electron and hole traps at Т = 773–973 K is discussed in the paper.

Realization of an excellent two-dimensional Heisenberg ferromagnetic system: the synthesis, structure, and thermodynamic properties of piperazinediium tetrabromocuprate

A 2D Heisenberg ferromagnet with ultra-small interlayer coupling realized in a metal–organic crystal.

On the incorporation of iron into hexagonal barium titanate: I. electron paramagnetic resonance (EPR) study

Electron paramagnetic resonance (EPR) investigations of BaTiO3 + 0.04 BaO + x/2 Fe2O3 (0.007 ⩽ x ⩽ 0.05) ceramics and BaTi0.98Fe0.02O3 single crystals were performed to study the incorporation of Fe ions in the hexagonal 6H-BaTiO3 lattice and their defect properties. The samples were characterized by x-ray diffraction and wavelength-dispersive x-ray electron probe microanalysis. EPR spectra were recorded both in X- and Q-bands at room temperature. Angle-dependent single crystal EPR investigations and simulations of the ceramic powder EPR spectra revealed three different centers, which can be attributed to Fe3+ ions incorporated on crystallographically different Ti sites. Only one of them was already known before. Two spectra with axial symmetry belong to isolated Fe3+ ions incorporated at Ti(1) sites (exclusively corner-sharing oxygen octahedra) and Ti(2) sites (face-sharing octahedra). The difference of their spectral parameters arises from the different trigonal distortions of the two types of octahedra. The third spectrum has orthorhombic symmetry and is caused by Fe3+ centers associated with a nearest-neighbor charge-compensating oxygen vacancy. A model for the location of this associate is proposed.

Elucidating the Formation and Transformation Mechanisms of the Switchable Metal-Organic Framework ELM-11 by Powder and Single-Crystal EPR Study.

The effect of the synthesis conditions on the structure and guest-responsive properties of a "gate pressure" metal-organic framework (MOF) with composition [Cu(4,4'-bipy)2(BF4)2] n (4,4'-bipy = 4,4'-bipyridine), also known as ELM-11 (ELM = elastic layer material) was investigated. Two different batches of ELM-11, synthesized from water-methanol and water-acetonitrile solutions, have been entirely characterized by PXRD, nitrogen (77 K) and carbon dioxide (195 K) physisorption, elemental analysis, DRIFT, TG, and SEM. Both ELM-11 samples were studied by electron paramagnetic resonance (EPR) spectroscopy in order to follow the change in the local structure of the copper ion during the activation and resolvation. Continuous wave X-band EPR measurements on powder samples provided an elongated octahedral coordination symmetry of the cupric ions and revealed different axial ligands in the as-synthesized and activated forms in both bulk samples of ELM-11. One of the procedures was amended in order to slow down the crystallization that allows isolation of single crystals of two polymorphic modifications of Cu-4,4'-bipyridine coordination polymers, namely [Cu(4,4'-bipy)2(CH3CN)2](BF4)2 and [Cu2O(4,4'-bipy)3(CH3CN)4](BF4)2, one of which shows a crystal structure similar to that of ELM-11. Further single-crystal EPR experiments on the as-synthesized material [Cu(4,4'-bipy)2(CH3CN)2](BF4)2 revealed the orientation of the g tensor of the cupric ions and proved that layers of acetonitrile-synthesized ELM-11 are arranged perpendicularly to the crystallographic c axis.

G-Tensor Directions in the Protein Structural Frame of Hyperthermophilic Archaeal Reduced Rieske-Type Ferredoxin Explored by 13C Pulsed Electron Paramagnetic Resonance.

Interpretation of magnetic resonance data in the context of structural and chemical biology requires prior knowledge of the g-tensor directions for paramagnetic metallo-cofactors with respect to the protein structural frame. Access to this information is often limited by the strict requirement of suitable protein crystals for single-crystal electron paramagnetic resonance (EPR) measurements or the reliance on protons (with ambiguous locations in crystal structures) near the paramagnetic metal site. Here we develop a novel pulsed EPR approach with selective 13Cβ-cysteine labeling of model [2Fe-2S] proteins to help bypass these problems. Analysis of the 13Cβ-cysteine hyperfine tensors reproduces the g-tensor of the Pseudomonas putida ISC-like [2Fe-2S] ferredoxin (FdxB). Its application to the hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin (ARF) from Sulfolobus solfataricus, for which the single-crystal EPR approach was not feasible, supports the best-fit g x-, g z-, and g y-tensor directions of the reduced cluster as nearly along Fe-Fe, S-S, and the cluster plane normal, respectively. These approximate principal directions of the reduced ARF g-tensor, explored by 13C pulsed EPR, are less skewed from the cluster molecular axes and are largely consistent with those previously determined by single-crystal EPR for the cytochrome bc1-associated, reduced Rieske [2Fe-2S] center. This suggests the approximate g-tensor directions are conserved across the phylogenetically and functionally divergent Rieske-type [2Fe-2S] proteins.

Optimizing Crystal Size of Photosystem II by Macroseeding: Toward Neutron Protein Crystallography.

Photosystem II (PSII) catalyzes the photo-oxidation of water to molecular oxygen and protons. The water splitting reaction occurs inside the oxygen-evolving complex (OEC) via a Mn4CaO5 cluster. To elucidate the reaction mechanism, detailed structural information for each intermediate state of the OEC is required. Despite the current high-resolution crystal structure of PSII at 1.85 Å and other efforts to follow the structural changes of the Mn4CaO5 cluster using X-ray free electron laser (XFEL) crystallography in addition to spectroscopic methods, many details about the reaction mechanism and conformational changes in the catalytic site during water oxidation still remain elusive. In this study, we present a rarely found successful application of the conventional macroseeding method to a large membrane protein like the dimeric PSII core complex (dPSIIcc). Combining microseeding with macroseeding crystallization techniques allowed us to reproducibly grow large dPSIIcc crystals with a size of ~3 mm. These large crystals will help improve the data collected from spectroscopic methods like polarized extended X-ray absorption fine structure (EXAFS) and single crystal electron paramagnetic resonance (EPR) techniques and are a prerequisite for determining a three-dimensional structure using neutron diffraction.

Magnetostructural Characterization of Oxalamide Dihalo-Bridged Copper Dimers: Intra- and Interdimer Interactions Studied by Single-Crystal Electron Spin Resonance Spectroscopy.

Detailed single-crystal electron spin resonance (ESR) analysis of oxalamide complexes with halogen-bridged copper dimers, supported by X-ray, magnetic susceptibility, and powder ESR studies, is reported. Four complexes with two different ligands are synthesized: [CuLA (μ-X)]2 and [CuLV (μ-X)]2 , for which LA =N-(l-alanine methyl ester)-N'-[(2-pyridine-2-yl)methyl]oxalamide and LV =N-(l-valine methyl ester)-N'-[(2-pyridine-2-yl)methyl]oxalamide, for which X=Cl or Br. X-ray analysis shows that the geometry at each copper(II) ion is square pyramidal, whereas two pyramids share one base-to-apex edge with parallel basal planes. The complexes are linked by hydrogen bonds into infinite chains and are further linked into a 3D network. Susceptibility measurements show that the copper centers in the dimers are weakly antiferromagnetically coupled (|J|≈1-2 cm-1 ). From powder ESR spectroscopy, the g values and dx2-y2 orbital as the ground state of the unpaired electron are determined. The complexes show unusual anisotropic splitting and merging of the ESR lines if their single crystals rotate in a magnetic field. The observation of this partially resolved intradimer dipolar splitting enables estimation of the weak interdimer exchange interaction parameter |J'|≈0.001 cm-1 .

Single Crystal Electron Paramagnetic Resonance of Dimethylammonium and Ammonium Hybrid Formate Frameworks: Influence of External Electric Field

We present a continuous wave electron paramagnetic resonance (EPR) study of a Mn2+ doped [(CH3)2NH2][Zn(HCOO)3] hybrid dense metal–organic framework (MOF) that exhibits an order–disorder structural phase transition at Tc = 163 K. The W-band EPR measurements of a powder sample are performed to verify the previously reported spin Hamiltonian parameters of the Mn2+ centers in the low-temperature phase. The temperature dependent single crystal X-band EPR experiments reveal that Mn2+ probe ions are susceptible to the phase transition, as the spectrum changes drastically at Tc. The angular dependent EPR spectra of Mn2+ centers are obtained by rotating the single crystal sample about three distinct directions. The simulation of the determined angular dependences reveals six MnO6 octahedra in the ordered phase that originate from a severe crystal twinning of the [(CH3)2NH2][Zn(HCOO)3] MOF. The possible ferroelectric origin of the crystalline twins is investigated by single crystal EPR measurements with an applied...

EPR and photoluminescence study of irradiated anion-defective alumina single crystals

Electron paramagnetic resonance (EPR) and photoluminescence (PL) spectra of anion-defective alumina single crystals were measured. Exposure to a dose 10Gy–1kGy causes isotropic EPR signal of a complex form, this signal contains narrow and broad components. At the same time, in the PL spectrum alongside with a band of F+-centers (3.8eV) an additional emission band with the maximum of 2.25eV is registered. This band corresponds to aggregate F22+-centers which were create under irradiation. By comparing measurements in EPR and PL spectra with further stepped annealing in the temperature range of 773–1473K of the samples exposed to the same doses, we were able to conclude that a narrow component of isotropic EPR signal is associated with the formation of paramagnetic F22+-centers under irradiation. A wide component can be caused by deep hole traps which are created by a complex defect (VAl2− – F+) with a localized hole.