A hybrid method is developed to simulate two-phase flows with soluble surfactants. In this method, the interface and bulk surfactant concentration equations of diffuse-interface form, which include source terms to consider surfactant adsorption and desorption dynamics, are solved in the entire fluid domain by the finite difference method, while two-phase flows are solved by a lattice Boltzmann color-gradient model, which can accurately simulate binary fluids with unequal densities. The flow and interface surfactant concentration fields are coupled by a modified Langmuir equation of state, which allows for surfactant concentration beyond critical micelle concentration. The capability and accuracy of the hybrid method are first validated by simulating three numerical examples, including the adsorption of bulk surfactants onto the interface of a stationary droplet, the droplet migration in a constant surfactant gradient, and the deformation of a surfactant-laden droplet in a simple shear flow, in which the numerical results are compared with theoretical solutions and available literature data. Then, the hybrid method is applied to simulate the buoyancy-driven bubble rise in a surfactant solution, in which the influence of surfactants is identified for varying wall confinement, density ratio, Eotvos number and Biot number. It is found that surfactants exhibit a retardation effect on the bubble rise due to the Marangoni stress that resists interface motion, and the retardation effect weakens as the Eotvos or Biot number increases. We further show that the weakened retardation effect at higher Biot numbers is attributed to a decreased non-uniform effect of surfactants at the interface. By comparing with the Cahn-Hilliard phase-field method, we also show that the present method conserves the mass for each fluid, improves numerical stability especially at high density ratio and Eotvos number, and does not need the selection of free parameters, thus breaking the limitations of the existing method.